Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6609 and GFF6610 are separated by 335 nucleotides GFF6610 and GFF6611 are separated by 312 nucleotides GFF6611 and GFF6612 are separated by 380 nucleotides
GFF6609 - FIG00957806: hypothetical protein, at 52,682 to 53,434
GFF6609
GFF6610 - putative lipoprotein, at 53,770 to 54,120
GFF6610
GFF6611 - Transcriptional regulator, Xre family, at 54,433 to 54,726
GFF6611
GFF6612 - y4eB gene in pNGR234a homolog, at 55,107 to 55,421
GFF6612
Position (kb) 53
54
55 Strain fitness (log2 ratio) -2
-1
0
1 at 53.010 kb on + strand, within GFF6609 at 53.010 kb on + strand, within GFF6609 at 53.010 kb on + strand, within GFF6609 at 53.011 kb on - strand, within GFF6609 at 53.011 kb on - strand, within GFF6609 at 53.011 kb on - strand, within GFF6609 at 53.182 kb on - strand, within GFF6609 at 53.343 kb on + strand, within GFF6609 at 53.343 kb on + strand, within GFF6609 at 53.343 kb on + strand, within GFF6609 at 53.382 kb on + strand at 53.382 kb on + strand at 53.382 kb on + strand at 53.382 kb on + strand at 53.382 kb on + strand at 53.382 kb on + strand at 53.383 kb on - strand at 53.383 kb on - strand at 53.383 kb on - strand at 53.383 kb on - strand at 53.383 kb on - strand at 53.383 kb on - strand at 53.383 kb on - strand at 53.388 kb on + strand at 53.388 kb on + strand at 53.389 kb on - strand at 53.404 kb on - strand at 53.487 kb on - strand at 53.487 kb on - strand at 53.499 kb on + strand at 53.500 kb on - strand at 53.523 kb on - strand at 53.523 kb on - strand at 53.552 kb on - strand at 53.560 kb on + strand at 53.560 kb on + strand at 53.582 kb on + strand at 53.583 kb on - strand at 53.604 kb on + strand at 53.740 kb on + strand at 53.740 kb on + strand at 53.740 kb on + strand at 53.811 kb on - strand, within GFF6610 at 53.840 kb on + strand, within GFF6610 at 53.840 kb on + strand, within GFF6610 at 53.840 kb on + strand, within GFF6610 at 53.841 kb on - strand, within GFF6610 at 53.986 kb on + strand, within GFF6610 at 54.192 kb on + strand at 54.192 kb on + strand at 54.192 kb on + strand at 54.192 kb on + strand at 54.192 kb on + strand at 54.193 kb on - strand at 54.193 kb on - strand at 54.193 kb on - strand at 54.193 kb on - strand at 54.311 kb on - strand at 54.447 kb on + strand at 54.447 kb on + strand at 54.447 kb on + strand at 54.447 kb on + strand at 54.447 kb on + strand at 54.447 kb on + strand at 54.447 kb on + strand at 54.447 kb on + strand at 54.447 kb on + strand at 54.447 kb on + strand at 54.448 kb on - strand at 54.448 kb on - strand at 54.448 kb on - strand at 54.448 kb on - strand at 54.448 kb on - strand at 54.448 kb on - strand at 54.448 kb on - strand at 54.529 kb on + strand, within GFF6611 at 54.529 kb on + strand, within GFF6611 at 54.529 kb on + strand, within GFF6611 at 54.529 kb on + strand, within GFF6611 at 54.529 kb on + strand, within GFF6611 at 54.530 kb on - strand, within GFF6611 at 54.530 kb on - strand, within GFF6611 at 54.530 kb on - strand, within GFF6611 at 54.530 kb on - strand, within GFF6611 at 54.530 kb on - strand, within GFF6611 at 54.530 kb on - strand, within GFF6611 at 54.530 kb on - strand, within GFF6611 at 54.530 kb on - strand, within GFF6611 at 54.530 kb on - strand, within GFF6611 at 54.530 kb on - strand, within GFF6611 at 54.530 kb on - strand, within GFF6611 at 54.530 kb on - strand, within GFF6611 at 54.601 kb on + strand, within GFF6611 at 54.724 kb on + strand at 54.724 kb on + strand at 54.724 kb on + strand at 54.725 kb on - strand at 54.725 kb on - strand at 54.725 kb on - strand at 54.725 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 53,010 + GFF6609 0.44 +0.1 53,010 + GFF6609 0.44 -0.2 53,010 + GFF6609 0.44 -0.1 53,011 - GFF6609 0.44 -0.2 53,011 - GFF6609 0.44 -0.7 53,011 - GFF6609 0.44 -0.5 53,182 - GFF6609 0.66 +0.7 53,343 + GFF6609 0.88 -0.4 53,343 + GFF6609 0.88 -0.1 53,343 + GFF6609 0.88 +0.3 53,382 + -0.3 53,382 + -0.1 53,382 + +0.0 53,382 + -0.2 53,382 + +0.2 53,382 + -1.6 53,383 - -0.2 53,383 - +0.5 53,383 - -0.5 53,383 - -0.2 53,383 - -0.7 53,383 - -0.8 53,383 - -0.7 53,388 + +0.3 53,388 + -1.6 53,389 - +0.0 53,404 - -0.2 53,487 - -0.3 53,487 - +0.5 53,499 + -0.1 53,500 - -0.8 53,523 - +0.2 53,523 - -1.3 53,552 - +0.7 53,560 + +0.8 53,560 + +1.1 53,582 + -0.2 53,583 - -0.6 53,604 + -0.6 53,740 + -0.6 53,740 + +0.5 53,740 + -1.0 53,811 - GFF6610 0.12 -0.7 53,840 + GFF6610 0.20 -0.3 53,840 + GFF6610 0.20 +0.3 53,840 + GFF6610 0.20 -1.0 53,841 - GFF6610 0.20 -0.3 53,986 + GFF6610 0.62 -0.8 54,192 + -0.2 54,192 + +0.5 54,192 + +0.6 54,192 + +0.3 54,192 + -1.1 54,193 - -0.3 54,193 - +0.0 54,193 - -0.4 54,193 - +0.6 54,311 - +0.5 54,447 + +1.4 54,447 + -0.2 54,447 + +0.4 54,447 + -1.2 54,447 + -1.1 54,447 + -1.4 54,447 + -0.7 54,447 + +0.0 54,447 + -0.5 54,447 + -0.1 54,448 - -2.0 54,448 - -0.5 54,448 - -0.3 54,448 - +0.2 54,448 - -0.4 54,448 - -0.2 54,448 - -0.0 54,529 + GFF6611 0.33 -0.6 54,529 + GFF6611 0.33 -0.2 54,529 + GFF6611 0.33 -0.6 54,529 + GFF6611 0.33 -1.5 54,529 + GFF6611 0.33 +0.3 54,530 - GFF6611 0.33 -0.7 54,530 - GFF6611 0.33 -0.2 54,530 - GFF6611 0.33 -0.0 54,530 - GFF6611 0.33 -0.0 54,530 - GFF6611 0.33 +0.6 54,530 - GFF6611 0.33 -0.1 54,530 - GFF6611 0.33 -0.2 54,530 - GFF6611 0.33 -1.2 54,530 - GFF6611 0.33 -0.4 54,530 - GFF6611 0.33 -0.3 54,530 - GFF6611 0.33 -0.4 54,530 - GFF6611 0.33 -0.8 54,601 + GFF6611 0.57 -0.1 54,724 + -0.2 54,724 + -1.1 54,724 + -1.3 54,725 - +0.2 54,725 - +0.3 54,725 - -0.2 54,725 - -0.6
Or see this region's nucleotide sequence