Strain Fitness in Variovorax sp. SCN45 around GFF6546

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6545 and GFF6546 are separated by 191 nucleotidesGFF6546 and GFF6547 are separated by 51 nucleotidesGFF6547 and GFF6548 are separated by 72 nucleotides GFF6545 - Uncharacterized MFS-type transporter, at 42,641 to 43,960 GFF6545 GFF6546 - hypothetical protein, at 44,152 to 45,111 GFF6546 GFF6547 - Glutathione S-transferase (EC 2.5.1.18), at 45,163 to 45,867 GFF6547 GFF6548 - hypothetical protein, at 45,940 to 46,593 GFF6548 Position (kb) 44 45 46Strain fitness (log2 ratio) -1 0 1at 43.168 kb on + strand, within GFF6545at 43.168 kb on + strand, within GFF6545at 43.168 kb on + strand, within GFF6545at 43.168 kb on + strand, within GFF6545at 43.168 kb on + strand, within GFF6545at 43.168 kb on + strand, within GFF6545at 43.169 kb on - strand, within GFF6545at 43.170 kb on + strand, within GFF6545at 43.170 kb on + strand, within GFF6545at 43.170 kb on + strand, within GFF6545at 43.170 kb on + strand, within GFF6545at 43.179 kb on + strand, within GFF6545at 43.179 kb on + strand, within GFF6545at 43.179 kb on + strand, within GFF6545at 43.180 kb on - strand, within GFF6545at 43.180 kb on - strand, within GFF6545at 43.333 kb on - strand, within GFF6545at 43.530 kb on + strand, within GFF6545at 43.531 kb on - strand, within GFF6545at 43.531 kb on - strand, within GFF6545at 43.539 kb on + strand, within GFF6545at 43.539 kb on + strand, within GFF6545at 43.539 kb on + strand, within GFF6545at 43.539 kb on + strand, within GFF6545at 43.539 kb on + strand, within GFF6545at 43.539 kb on + strand, within GFF6545at 43.539 kb on + strand, within GFF6545at 43.539 kb on - strand, within GFF6545at 43.540 kb on - strand, within GFF6545at 43.540 kb on - strand, within GFF6545at 43.540 kb on - strand, within GFF6545at 43.599 kb on + strand, within GFF6545at 43.599 kb on + strand, within GFF6545at 43.600 kb on - strand, within GFF6545at 43.600 kb on - strand, within GFF6545at 43.643 kb on + strand, within GFF6545at 43.643 kb on + strand, within GFF6545at 43.644 kb on - strand, within GFF6545at 43.644 kb on - strand, within GFF6545at 43.644 kb on - strand, within GFF6545at 43.644 kb on - strand, within GFF6545at 43.644 kb on - strand, within GFF6545at 43.764 kb on + strand, within GFF6545at 43.837 kb on - strandat 43.848 kb on + strandat 43.849 kb on - strandat 43.849 kb on - strandat 43.849 kb on - strandat 43.849 kb on - strandat 43.894 kb on - strandat 44.051 kb on - strandat 44.066 kb on - strandat 44.066 kb on - strandat 44.073 kb on - strandat 44.779 kb on + strand, within GFF6546at 44.780 kb on - strand, within GFF6546at 44.965 kb on + strand, within GFF6546at 44.965 kb on + strand, within GFF6546at 44.966 kb on - strand, within GFF6546at 45.232 kb on + strandat 45.232 kb on + strandat 45.232 kb on + strandat 45.232 kb on + strandat 45.233 kb on - strandat 45.233 kb on - strandat 45.296 kb on - strand, within GFF6547at 45.448 kb on + strand, within GFF6547at 45.448 kb on + strand, within GFF6547at 45.449 kb on - strand, within GFF6547at 45.449 kb on - strand, within GFF6547at 45.449 kb on - strand, within GFF6547at 45.592 kb on + strand, within GFF6547at 45.592 kb on + strand, within GFF6547at 45.593 kb on - strand, within GFF6547at 45.593 kb on - strand, within GFF6547at 45.619 kb on + strand, within GFF6547at 45.619 kb on + strand, within GFF6547at 45.620 kb on - strand, within GFF6547at 45.697 kb on + strand, within GFF6547at 45.697 kb on + strand, within GFF6547at 45.698 kb on - strand, within GFF6547at 45.698 kb on - strand, within GFF6547at 45.698 kb on - strand, within GFF6547at 45.698 kb on - strand, within GFF6547at 45.698 kb on - strand, within GFF6547at 45.698 kb on - strand, within GFF6547at 45.751 kb on + strand, within GFF6547at 45.751 kb on + strand, within GFF6547at 45.751 kb on + strand, within GFF6547at 45.751 kb on + strand, within GFF6547at 46.060 kb on + strand, within GFF6548

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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43,168 + GFF6545 0.40 -0.3
43,168 + GFF6545 0.40 +0.4
43,168 + GFF6545 0.40 -0.5
43,168 + GFF6545 0.40 -0.8
43,168 + GFF6545 0.40 -0.1
43,168 + GFF6545 0.40 -0.4
43,169 - GFF6545 0.40 +0.7
43,170 + GFF6545 0.40 -0.7
43,170 + GFF6545 0.40 -0.2
43,170 + GFF6545 0.40 -0.2
43,170 + GFF6545 0.40 -0.3
43,179 + GFF6545 0.41 +0.4
43,179 + GFF6545 0.41 +0.5
43,179 + GFF6545 0.41 -0.9
43,180 - GFF6545 0.41 +0.8
43,180 - GFF6545 0.41 -0.7
43,333 - GFF6545 0.52 -0.4
43,530 + GFF6545 0.67 +0.7
43,531 - GFF6545 0.67 -0.6
43,531 - GFF6545 0.67 -0.6
43,539 + GFF6545 0.68 -0.5
43,539 + GFF6545 0.68 +0.1
43,539 + GFF6545 0.68 -0.8
43,539 + GFF6545 0.68 +0.1
43,539 + GFF6545 0.68 -0.5
43,539 + GFF6545 0.68 -0.4
43,539 + GFF6545 0.68 -1.5
43,539 - GFF6545 0.68 +0.1
43,540 - GFF6545 0.68 -0.4
43,540 - GFF6545 0.68 +0.0
43,540 - GFF6545 0.68 +0.1
43,599 + GFF6545 0.73 -0.9
43,599 + GFF6545 0.73 -0.9
43,600 - GFF6545 0.73 -1.0
43,600 - GFF6545 0.73 +1.7
43,643 + GFF6545 0.76 +1.2
43,643 + GFF6545 0.76 +0.1
43,644 - GFF6545 0.76 -0.2
43,644 - GFF6545 0.76 -1.7
43,644 - GFF6545 0.76 -0.4
43,644 - GFF6545 0.76 +0.3
43,644 - GFF6545 0.76 +0.1
43,764 + GFF6545 0.85 -0.4
43,837 - +0.3
43,848 + -0.1
43,849 - +0.5
43,849 - -0.5
43,849 - +0.7
43,849 - -0.3
43,894 - -1.3
44,051 - -0.0
44,066 - -0.2
44,066 - -1.1
44,073 - -0.1
44,779 + GFF6546 0.65 -1.0
44,780 - GFF6546 0.65 -0.5
44,965 + GFF6546 0.85 -0.9
44,965 + GFF6546 0.85 -1.2
44,966 - GFF6546 0.85 -0.6
45,232 + +0.4
45,232 + +0.4
45,232 + -0.2
45,232 + +0.2
45,233 - -0.1
45,233 - -0.0
45,296 - GFF6547 0.19 -0.3
45,448 + GFF6547 0.40 +0.5
45,448 + GFF6547 0.40 +0.4
45,449 - GFF6547 0.41 -0.3
45,449 - GFF6547 0.41 +0.3
45,449 - GFF6547 0.41 +0.3
45,592 + GFF6547 0.61 -0.3
45,592 + GFF6547 0.61 -0.1
45,593 - GFF6547 0.61 +1.4
45,593 - GFF6547 0.61 +0.1
45,619 + GFF6547 0.65 -0.2
45,619 + GFF6547 0.65 +0.3
45,620 - GFF6547 0.65 -0.4
45,697 + GFF6547 0.76 +0.7
45,697 + GFF6547 0.76 -0.5
45,698 - GFF6547 0.76 -0.9
45,698 - GFF6547 0.76 -0.3
45,698 - GFF6547 0.76 -0.8
45,698 - GFF6547 0.76 -0.8
45,698 - GFF6547 0.76 -0.9
45,698 - GFF6547 0.76 +0.7
45,751 + GFF6547 0.83 +0.7
45,751 + GFF6547 0.83 +0.3
45,751 + GFF6547 0.83 -0.4
45,751 + GFF6547 0.83 +0.7
46,060 + GFF6548 0.18 +0.4

Or see this region's nucleotide sequence