Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6489 and GFF6490 overlap by 4 nucleotides GFF6490 and GFF6491 are separated by 80 nucleotides GFF6491 and GFF6492 are separated by 22 nucleotides GFF6492 and GFF6493 are separated by 519 nucleotides
GFF6489 - no description, at 67,413 to 67,856
GFF6489
GFF6490 - Uncharacterized conserved protein YfiP, contains DTW domain, at 67,853 to 68,545
GFF6490
GFF6491 - SAM-dependent methyltransferase, at 68,626 to 69,315
GFF6491
GFF6492 - no description, at 69,338 to 69,676
GFF6492
GFF6493 - Ribosomal-protein-S5p-alanine acetyltransferase, at 70,196 to 70,549
GFF6493
Position (kb) 68
69
70 Strain fitness (log2 ratio) -2
-1
0
1
2 at 67.741 kb on + strand, within GFF6489 at 67.742 kb on - strand, within GFF6489 at 67.742 kb on - strand, within GFF6489 at 67.764 kb on - strand, within GFF6489 at 67.959 kb on + strand, within GFF6490 at 67.959 kb on + strand, within GFF6490 at 67.960 kb on - strand, within GFF6490 at 67.960 kb on - strand, within GFF6490 at 67.960 kb on - strand, within GFF6490 at 67.983 kb on + strand, within GFF6490 at 68.091 kb on + strand, within GFF6490 at 68.091 kb on + strand, within GFF6490 at 68.091 kb on + strand, within GFF6490 at 68.091 kb on + strand, within GFF6490 at 68.091 kb on + strand, within GFF6490 at 68.091 kb on + strand, within GFF6490 at 68.091 kb on + strand, within GFF6490 at 68.092 kb on - strand, within GFF6490 at 68.092 kb on - strand, within GFF6490 at 68.143 kb on - strand, within GFF6490 at 68.143 kb on - strand, within GFF6490 at 68.143 kb on - strand, within GFF6490 at 68.143 kb on - strand, within GFF6490 at 68.226 kb on + strand, within GFF6490 at 68.226 kb on + strand, within GFF6490 at 68.226 kb on + strand, within GFF6490 at 68.226 kb on + strand, within GFF6490 at 68.227 kb on - strand, within GFF6490 at 68.227 kb on - strand, within GFF6490 at 68.289 kb on + strand, within GFF6490 at 68.289 kb on + strand, within GFF6490 at 68.289 kb on + strand, within GFF6490 at 68.289 kb on + strand, within GFF6490 at 68.290 kb on - strand, within GFF6490 at 68.290 kb on - strand, within GFF6490 at 68.290 kb on - strand, within GFF6490 at 68.290 kb on - strand, within GFF6490 at 68.290 kb on - strand, within GFF6490 at 68.474 kb on + strand, within GFF6490 at 68.666 kb on + strand at 68.667 kb on - strand at 68.813 kb on + strand, within GFF6491 at 69.005 kb on + strand, within GFF6491 at 69.005 kb on + strand, within GFF6491 at 69.005 kb on + strand, within GFF6491 at 69.005 kb on + strand, within GFF6491 at 69.006 kb on - strand, within GFF6491 at 69.006 kb on - strand, within GFF6491 at 69.006 kb on - strand, within GFF6491 at 69.006 kb on - strand, within GFF6491 at 69.006 kb on - strand, within GFF6491 at 69.006 kb on - strand, within GFF6491 at 69.006 kb on - strand, within GFF6491 at 69.825 kb on - strand at 69.825 kb on - strand at 69.927 kb on + strand at 69.927 kb on + strand at 69.928 kb on - strand at 69.928 kb on - strand at 70.062 kb on - strand at 70.062 kb on - strand at 70.062 kb on - strand at 70.178 kb on + strand at 70.179 kb on - strand at 70.179 kb on - strand at 70.271 kb on - strand, within GFF6493 at 70.271 kb on - strand, within GFF6493 at 70.271 kb on - strand, within GFF6493 at 70.299 kb on - strand, within GFF6493 at 70.307 kb on + strand, within GFF6493 at 70.310 kb on + strand, within GFF6493 at 70.310 kb on + strand, within GFF6493 at 70.310 kb on + strand, within GFF6493 at 70.310 kb on + strand, within GFF6493 at 70.310 kb on + strand, within GFF6493 at 70.311 kb on - strand, within GFF6493 at 70.311 kb on - strand, within GFF6493
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 67,741 + GFF6489 0.74 -0.4 67,742 - GFF6489 0.74 -0.1 67,742 - GFF6489 0.74 +0.6 67,764 - GFF6489 0.79 +0.1 67,959 + GFF6490 0.15 -0.5 67,959 + GFF6490 0.15 +0.4 67,960 - GFF6490 0.15 +0.7 67,960 - GFF6490 0.15 +0.7 67,960 - GFF6490 0.15 -0.2 67,983 + GFF6490 0.19 -0.3 68,091 + GFF6490 0.34 +0.1 68,091 + GFF6490 0.34 -1.4 68,091 + GFF6490 0.34 +2.3 68,091 + GFF6490 0.34 +0.1 68,091 + GFF6490 0.34 -0.9 68,091 + GFF6490 0.34 +0.6 68,091 + GFF6490 0.34 -0.1 68,092 - GFF6490 0.34 +0.1 68,092 - GFF6490 0.34 -0.6 68,143 - GFF6490 0.42 -0.1 68,143 - GFF6490 0.42 -0.1 68,143 - GFF6490 0.42 -2.0 68,143 - GFF6490 0.42 -0.7 68,226 + GFF6490 0.54 +2.3 68,226 + GFF6490 0.54 -0.2 68,226 + GFF6490 0.54 -0.7 68,226 + GFF6490 0.54 -0.1 68,227 - GFF6490 0.54 +0.5 68,227 - GFF6490 0.54 -1.2 68,289 + GFF6490 0.63 +0.1 68,289 + GFF6490 0.63 -0.1 68,289 + GFF6490 0.63 -0.0 68,289 + GFF6490 0.63 +0.1 68,290 - GFF6490 0.63 -0.4 68,290 - GFF6490 0.63 -0.4 68,290 - GFF6490 0.63 -0.7 68,290 - GFF6490 0.63 -0.1 68,290 - GFF6490 0.63 -0.3 68,474 + GFF6490 0.90 +0.7 68,666 + +0.1 68,667 - -0.1 68,813 + GFF6491 0.27 +1.7 69,005 + GFF6491 0.55 -0.7 69,005 + GFF6491 0.55 -2.0 69,005 + GFF6491 0.55 +0.1 69,005 + GFF6491 0.55 -0.6 69,006 - GFF6491 0.55 -1.6 69,006 - GFF6491 0.55 -0.6 69,006 - GFF6491 0.55 -0.6 69,006 - GFF6491 0.55 -1.3 69,006 - GFF6491 0.55 -0.5 69,006 - GFF6491 0.55 -1.2 69,006 - GFF6491 0.55 -0.7 69,825 - -0.2 69,825 - -0.1 69,927 + -0.2 69,927 + -0.3 69,928 - -0.4 69,928 - +1.0 70,062 - -0.7 70,062 - +0.1 70,062 - -0.3 70,178 + +0.1 70,179 - -0.2 70,179 - -0.5 70,271 - GFF6493 0.21 +0.4 70,271 - GFF6493 0.21 +1.3 70,271 - GFF6493 0.21 +2.1 70,299 - GFF6493 0.29 -0.3 70,307 + GFF6493 0.31 +0.1 70,310 + GFF6493 0.32 -0.9 70,310 + GFF6493 0.32 -0.4 70,310 + GFF6493 0.32 -0.4 70,310 + GFF6493 0.32 +0.4 70,310 + GFF6493 0.32 +0.1 70,311 - GFF6493 0.32 -0.1 70,311 - GFF6493 0.32 +0.3
Or see this region's nucleotide sequence