Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6464 and GFF6465 are separated by 60 nucleotides GFF6465 and GFF6466 are separated by 27 nucleotides GFF6466 and GFF6467 are separated by 95 nucleotides
GFF6464 - Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1), at 41,001 to 42,698
GFF6464
GFF6465 - hypothetical protein, at 42,759 to 43,838
GFF6465
GFF6466 - no description, at 43,866 to 44,102
GFF6466
GFF6467 - Nucleoside-diphosphate-sugar epimerases, at 44,198 to 45,217
GFF6467
Position (kb) 42
43
44 Strain fitness (log2 ratio) -2
-1
0
1
2 at 42.696 kb on + strand at 42.696 kb on + strand at 42.696 kb on + strand at 42.696 kb on + strand at 42.696 kb on + strand at 42.696 kb on + strand at 42.696 kb on + strand at 42.696 kb on + strand at 42.696 kb on + strand at 42.696 kb on + strand at 42.696 kb on + strand at 42.696 kb on + strand at 42.696 kb on + strand at 42.697 kb on - strand at 42.697 kb on - strand at 42.697 kb on - strand at 42.697 kb on - strand at 42.697 kb on - strand at 42.697 kb on - strand at 42.697 kb on - strand at 42.697 kb on - strand at 42.697 kb on - strand at 42.697 kb on - strand at 42.769 kb on + strand at 43.009 kb on + strand, within GFF6465 at 43.009 kb on + strand, within GFF6465 at 43.009 kb on + strand, within GFF6465 at 43.723 kb on + strand, within GFF6465 at 43.724 kb on - strand, within GFF6465 at 43.851 kb on + strand at 43.852 kb on - strand at 43.860 kb on + strand at 44.018 kb on - strand, within GFF6466 at 44.168 kb on + strand at 44.168 kb on + strand at 44.637 kb on - strand, within GFF6467 at 44.670 kb on - strand, within GFF6467 at 44.670 kb on - strand, within GFF6467 at 44.670 kb on - strand, within GFF6467
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 42,696 + -0.6 42,696 + -1.3 42,696 + -0.5 42,696 + -2.0 42,696 + -0.2 42,696 + -0.3 42,696 + +1.1 42,696 + +0.5 42,696 + -2.4 42,696 + +0.5 42,696 + +0.0 42,696 + -1.9 42,696 + -0.3 42,697 - -0.1 42,697 - +0.9 42,697 - -0.4 42,697 - +0.1 42,697 - -1.3 42,697 - +0.1 42,697 - -0.2 42,697 - -0.7 42,697 - +1.0 42,697 - -0.3 42,769 + -0.9 43,009 + GFF6465 0.23 -0.8 43,009 + GFF6465 0.23 -1.7 43,009 + GFF6465 0.23 +0.9 43,723 + GFF6465 0.89 -0.6 43,724 - GFF6465 0.89 -1.1 43,851 + +2.7 43,852 - -0.8 43,860 + +0.2 44,018 - GFF6466 0.64 -0.1 44,168 + -0.6 44,168 + -0.6 44,637 - GFF6467 0.43 -0.1 44,670 - GFF6467 0.46 -2.3 44,670 - GFF6467 0.46 -0.6 44,670 - GFF6467 0.46 +1.7
Or see this region's nucleotide sequence