Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6436 and GFF6437 are separated by 2 nucleotides GFF6437 and GFF6438 are separated by 11 nucleotides GFF6438 and GFF6439 are separated by 153 nucleotides
GFF6436 - hypothetical protein, at 14,420 to 14,794
GFF6436
GFF6437 - no description, at 14,797 to 15,510
GFF6437
GFF6438 - hypothetical protein, at 15,522 to 15,938
GFF6438
GFF6439 - Transcriptional regulator, LysR family, at 16,092 to 17,009
GFF6439
Position (kb) 15
16 Strain fitness (log2 ratio) -2
-1
0
1 at 14.577 kb on + strand, within GFF6436 at 14.798 kb on + strand at 14.798 kb on + strand at 14.798 kb on + strand at 14.798 kb on + strand at 14.798 kb on + strand at 14.798 kb on + strand at 14.799 kb on - strand at 15.173 kb on + strand, within GFF6437 at 15.174 kb on - strand, within GFF6437 at 15.293 kb on + strand, within GFF6437 at 15.293 kb on + strand, within GFF6437 at 15.293 kb on + strand, within GFF6437 at 15.294 kb on - strand, within GFF6437 at 15.294 kb on - strand, within GFF6437 at 15.420 kb on - strand, within GFF6437 at 15.420 kb on - strand, within GFF6437 at 15.420 kb on - strand, within GFF6437 at 15.420 kb on - strand, within GFF6437 at 15.420 kb on - strand, within GFF6437 at 15.420 kb on - strand, within GFF6437 at 15.420 kb on - strand, within GFF6437 at 15.523 kb on + strand at 15.524 kb on - strand at 15.524 kb on - strand at 15.640 kb on + strand, within GFF6438 at 15.640 kb on + strand, within GFF6438 at 15.640 kb on + strand, within GFF6438 at 15.640 kb on + strand, within GFF6438 at 15.641 kb on - strand, within GFF6438 at 15.641 kb on - strand, within GFF6438 at 15.754 kb on + strand, within GFF6438 at 15.755 kb on - strand, within GFF6438 at 15.755 kb on - strand, within GFF6438 at 15.938 kb on + strand at 15.938 kb on + strand at 15.938 kb on + strand at 15.938 kb on + strand at 15.938 kb on + strand at 15.938 kb on + strand at 15.939 kb on - strand at 15.939 kb on - strand at 15.939 kb on - strand at 15.939 kb on - strand at 15.939 kb on - strand at 15.939 kb on - strand at 15.948 kb on + strand at 15.948 kb on + strand at 15.948 kb on + strand at 15.995 kb on + strand at 15.998 kb on - strand at 15.998 kb on - strand at 15.999 kb on - strand at 16.012 kb on - strand at 16.012 kb on - strand at 16.012 kb on - strand at 16.372 kb on - strand, within GFF6439 at 16.576 kb on - strand, within GFF6439
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 14,577 + GFF6436 0.42 -0.3 14,798 + +1.1 14,798 + +0.6 14,798 + +0.1 14,798 + -0.1 14,798 + +0.9 14,798 + +1.2 14,799 - -1.0 15,173 + GFF6437 0.53 -0.3 15,174 - GFF6437 0.53 +0.4 15,293 + GFF6437 0.69 +0.4 15,293 + GFF6437 0.69 +0.1 15,293 + GFF6437 0.69 -0.1 15,294 - GFF6437 0.70 +0.6 15,294 - GFF6437 0.70 -0.1 15,420 - GFF6437 0.87 +0.1 15,420 - GFF6437 0.87 -0.9 15,420 - GFF6437 0.87 +0.3 15,420 - GFF6437 0.87 -0.3 15,420 - GFF6437 0.87 +0.4 15,420 - GFF6437 0.87 -0.1 15,420 - GFF6437 0.87 -0.9 15,523 + +0.3 15,524 - -0.2 15,524 - -0.4 15,640 + GFF6438 0.28 -0.4 15,640 + GFF6438 0.28 -2.4 15,640 + GFF6438 0.28 -0.6 15,640 + GFF6438 0.28 +0.1 15,641 - GFF6438 0.29 +0.6 15,641 - GFF6438 0.29 -0.0 15,754 + GFF6438 0.56 +0.7 15,755 - GFF6438 0.56 -0.5 15,755 - GFF6438 0.56 -0.3 15,938 + -1.7 15,938 + -0.6 15,938 + +0.4 15,938 + -1.0 15,938 + -1.1 15,938 + -0.2 15,939 - +0.1 15,939 - -0.6 15,939 - -0.0 15,939 - +0.9 15,939 - -0.1 15,939 - -1.1 15,948 + -0.5 15,948 + -2.0 15,948 + -0.2 15,995 + -0.1 15,998 - +0.0 15,998 - +0.3 15,999 - +0.4 16,012 - -0.9 16,012 - -0.1 16,012 - +0.1 16,372 - GFF6439 0.31 -0.8 16,576 - GFF6439 0.53 -1.2
Or see this region's nucleotide sequence