Strain Fitness in Variovorax sp. SCN45 around GFF6416

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6415 and GFF6416 are separated by 37 nucleotidesGFF6416 and GFF6417 are separated by 16 nucleotides GFF6415 - ATP-dependent DNA helicase RecQ, at 89,037 to 90,812 GFF6415 GFF6416 - hypothetical protein, at 90,850 to 91,716 GFF6416 GFF6417 - BUG/TctC family periplasmic protein, at 91,733 to 92,725 GFF6417 Position (kb) 90 91 92Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 89.913 kb on + strand, within GFF6415at 89.913 kb on + strand, within GFF6415at 89.913 kb on + strand, within GFF6415at 89.913 kb on + strand, within GFF6415at 89.913 kb on + strand, within GFF6415at 89.913 kb on + strand, within GFF6415at 89.913 kb on + strand, within GFF6415at 89.913 kb on + strand, within GFF6415at 89.914 kb on - strand, within GFF6415at 89.914 kb on - strand, within GFF6415at 89.914 kb on - strand, within GFF6415at 89.914 kb on - strand, within GFF6415at 89.914 kb on - strand, within GFF6415at 89.916 kb on + strand, within GFF6415at 89.917 kb on - strand, within GFF6415at 89.917 kb on - strand, within GFF6415at 89.973 kb on + strand, within GFF6415at 89.973 kb on + strand, within GFF6415at 89.973 kb on + strand, within GFF6415at 89.973 kb on + strand, within GFF6415at 89.974 kb on - strand, within GFF6415at 89.974 kb on - strand, within GFF6415at 90.120 kb on + strand, within GFF6415at 90.120 kb on + strand, within GFF6415at 90.120 kb on + strand, within GFF6415at 90.120 kb on + strand, within GFF6415at 90.121 kb on - strand, within GFF6415at 90.121 kb on - strand, within GFF6415at 90.121 kb on - strand, within GFF6415at 90.121 kb on - strand, within GFF6415at 90.121 kb on - strand, within GFF6415at 90.225 kb on + strand, within GFF6415at 90.225 kb on + strand, within GFF6415at 90.225 kb on + strand, within GFF6415at 90.225 kb on + strand, within GFF6415at 90.225 kb on + strand, within GFF6415at 90.225 kb on + strand, within GFF6415at 90.225 kb on + strand, within GFF6415at 90.226 kb on - strand, within GFF6415at 90.226 kb on - strand, within GFF6415at 90.226 kb on - strand, within GFF6415at 90.226 kb on - strand, within GFF6415at 90.226 kb on - strand, within GFF6415at 90.226 kb on - strand, within GFF6415at 90.226 kb on - strand, within GFF6415at 90.226 kb on - strand, within GFF6415at 90.335 kb on + strand, within GFF6415at 90.335 kb on + strand, within GFF6415at 90.335 kb on + strand, within GFF6415at 90.335 kb on + strand, within GFF6415at 90.335 kb on + strand, within GFF6415at 90.335 kb on + strand, within GFF6415at 90.335 kb on + strand, within GFF6415at 90.335 kb on + strand, within GFF6415at 90.335 kb on + strand, within GFF6415at 90.336 kb on - strand, within GFF6415at 90.336 kb on - strand, within GFF6415at 90.336 kb on - strand, within GFF6415at 90.336 kb on - strand, within GFF6415at 90.336 kb on - strand, within GFF6415at 90.336 kb on - strand, within GFF6415at 90.336 kb on - strand, within GFF6415at 90.666 kb on + strandat 90.666 kb on + strandat 90.666 kb on + strandat 90.666 kb on + strandat 90.666 kb on + strandat 90.666 kb on + strandat 90.667 kb on - strandat 90.667 kb on - strandat 90.667 kb on - strandat 90.667 kb on - strandat 90.667 kb on - strandat 90.667 kb on - strandat 90.667 kb on - strandat 90.667 kb on - strandat 90.667 kb on - strandat 90.667 kb on - strandat 90.774 kb on + strandat 90.775 kb on - strandat 91.054 kb on + strand, within GFF6416at 91.054 kb on + strand, within GFF6416at 91.055 kb on - strand, within GFF6416at 91.055 kb on - strand, within GFF6416at 91.141 kb on + strand, within GFF6416at 91.141 kb on + strand, within GFF6416at 91.141 kb on + strand, within GFF6416at 91.141 kb on + strand, within GFF6416at 91.141 kb on + strand, within GFF6416at 91.142 kb on - strand, within GFF6416at 91.142 kb on - strand, within GFF6416at 91.142 kb on - strand, within GFF6416at 91.142 kb on - strand, within GFF6416at 91.142 kb on - strand, within GFF6416at 91.142 kb on - strand, within GFF6416at 91.603 kb on + strand, within GFF6416at 91.604 kb on - strand, within GFF6416at 91.959 kb on + strand, within GFF6417at 91.959 kb on + strand, within GFF6417at 91.959 kb on + strand, within GFF6417at 91.959 kb on + strand, within GFF6417at 91.959 kb on + strand, within GFF6417at 91.959 kb on + strand, within GFF6417at 91.959 kb on + strand, within GFF6417at 91.959 kb on + strand, within GFF6417at 91.959 kb on + strand, within GFF6417at 91.960 kb on - strand, within GFF6417at 91.960 kb on - strand, within GFF6417at 91.960 kb on - strand, within GFF6417at 91.968 kb on + strand, within GFF6417at 91.969 kb on - strand, within GFF6417at 92.154 kb on + strand, within GFF6417at 92.154 kb on + strand, within GFF6417at 92.154 kb on + strand, within GFF6417at 92.154 kb on + strand, within GFF6417at 92.154 kb on + strand, within GFF6417at 92.155 kb on - strand, within GFF6417at 92.155 kb on - strand, within GFF6417at 92.155 kb on - strand, within GFF6417at 92.155 kb on - strand, within GFF6417at 92.155 kb on - strand, within GFF6417at 92.155 kb on - strand, within GFF6417at 92.155 kb on - strand, within GFF6417at 92.155 kb on - strand, within GFF6417at 92.155 kb on - strand, within GFF6417at 92.155 kb on - strand, within GFF6417at 92.155 kb on - strand, within GFF6417at 92.155 kb on - strand, within GFF6417at 92.155 kb on - strand, within GFF6417at 92.241 kb on + strand, within GFF6417at 92.241 kb on + strand, within GFF6417at 92.241 kb on + strand, within GFF6417at 92.241 kb on + strand, within GFF6417at 92.241 kb on + strand, within GFF6417at 92.241 kb on + strand, within GFF6417at 92.241 kb on + strand, within GFF6417at 92.241 kb on + strand, within GFF6417at 92.241 kb on + strand, within GFF6417at 92.241 kb on + strand, within GFF6417at 92.241 kb on + strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.242 kb on - strand, within GFF6417at 92.439 kb on + strand, within GFF6417at 92.439 kb on + strand, within GFF6417at 92.440 kb on - strand, within GFF6417at 92.440 kb on - strand, within GFF6417at 92.440 kb on - strand, within GFF6417at 92.440 kb on - strand, within GFF6417at 92.590 kb on - strand, within GFF6417at 92.590 kb on - strand, within GFF6417

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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89,913 + GFF6415 0.49 +0.6
89,913 + GFF6415 0.49 +0.6
89,913 + GFF6415 0.49 -1.1
89,913 + GFF6415 0.49 +1.2
89,913 + GFF6415 0.49 -0.9
89,913 + GFF6415 0.49 +0.5
89,913 + GFF6415 0.49 -0.0
89,913 + GFF6415 0.49 -0.9
89,914 - GFF6415 0.49 -0.6
89,914 - GFF6415 0.49 -0.5
89,914 - GFF6415 0.49 -0.2
89,914 - GFF6415 0.49 +0.1
89,914 - GFF6415 0.49 -0.0
89,916 + GFF6415 0.49 -0.6
89,917 - GFF6415 0.50 -0.2
89,917 - GFF6415 0.50 +0.3
89,973 + GFF6415 0.53 -1.2
89,973 + GFF6415 0.53 -0.1
89,973 + GFF6415 0.53 -1.2
89,973 + GFF6415 0.53 +0.1
89,974 - GFF6415 0.53 +0.5
89,974 - GFF6415 0.53 -0.1
90,120 + GFF6415 0.61 +4.0
90,120 + GFF6415 0.61 +0.8
90,120 + GFF6415 0.61 +0.1
90,120 + GFF6415 0.61 -0.1
90,121 - GFF6415 0.61 -0.9
90,121 - GFF6415 0.61 -0.6
90,121 - GFF6415 0.61 +0.2
90,121 - GFF6415 0.61 +0.0
90,121 - GFF6415 0.61 -1.4
90,225 + GFF6415 0.67 -0.2
90,225 + GFF6415 0.67 -0.5
90,225 + GFF6415 0.67 -1.9
90,225 + GFF6415 0.67 -1.3
90,225 + GFF6415 0.67 +1.1
90,225 + GFF6415 0.67 +0.6
90,225 + GFF6415 0.67 +1.1
90,226 - GFF6415 0.67 +1.5
90,226 - GFF6415 0.67 -0.0
90,226 - GFF6415 0.67 +0.5
90,226 - GFF6415 0.67 -0.5
90,226 - GFF6415 0.67 -0.4
90,226 - GFF6415 0.67 +0.9
90,226 - GFF6415 0.67 -0.5
90,226 - GFF6415 0.67 +0.2
90,335 + GFF6415 0.73 -1.7
90,335 + GFF6415 0.73 -0.3
90,335 + GFF6415 0.73 +0.1
90,335 + GFF6415 0.73 +0.7
90,335 + GFF6415 0.73 -2.0
90,335 + GFF6415 0.73 -1.4
90,335 + GFF6415 0.73 +0.9
90,335 + GFF6415 0.73 -0.1
90,335 + GFF6415 0.73 +2.5
90,336 - GFF6415 0.73 -0.7
90,336 - GFF6415 0.73 +0.3
90,336 - GFF6415 0.73 -0.4
90,336 - GFF6415 0.73 -1.1
90,336 - GFF6415 0.73 +0.6
90,336 - GFF6415 0.73 -0.2
90,336 - GFF6415 0.73 +0.2
90,666 + -0.0
90,666 + -0.3
90,666 + -0.0
90,666 + -0.6
90,666 + +0.1
90,666 + +0.2
90,667 - -0.6
90,667 - +0.9
90,667 - +0.1
90,667 - -1.1
90,667 - +0.2
90,667 - +0.2
90,667 - -0.6
90,667 - -0.3
90,667 - -0.1
90,667 - +0.0
90,774 + +0.3
90,775 - +0.7
91,054 + GFF6416 0.24 +0.6
91,054 + GFF6416 0.24 +0.3
91,055 - GFF6416 0.24 -0.7
91,055 - GFF6416 0.24 -1.2
91,141 + GFF6416 0.34 -0.4
91,141 + GFF6416 0.34 -0.1
91,141 + GFF6416 0.34 -0.1
91,141 + GFF6416 0.34 -0.7
91,141 + GFF6416 0.34 -0.1
91,142 - GFF6416 0.34 -0.6
91,142 - GFF6416 0.34 +1.2
91,142 - GFF6416 0.34 -0.8
91,142 - GFF6416 0.34 +0.9
91,142 - GFF6416 0.34 +0.3
91,142 - GFF6416 0.34 -0.5
91,603 + GFF6416 0.87 -0.8
91,604 - GFF6416 0.87 -0.4
91,959 + GFF6417 0.23 -0.6
91,959 + GFF6417 0.23 -0.5
91,959 + GFF6417 0.23 -0.2
91,959 + GFF6417 0.23 -0.0
91,959 + GFF6417 0.23 +0.5
91,959 + GFF6417 0.23 +0.6
91,959 + GFF6417 0.23 -0.2
91,959 + GFF6417 0.23 +0.2
91,959 + GFF6417 0.23 -0.1
91,960 - GFF6417 0.23 -0.7
91,960 - GFF6417 0.23 +0.5
91,960 - GFF6417 0.23 -0.9
91,968 + GFF6417 0.24 -0.2
91,969 - GFF6417 0.24 -0.0
92,154 + GFF6417 0.42 -0.1
92,154 + GFF6417 0.42 -0.7
92,154 + GFF6417 0.42 -0.1
92,154 + GFF6417 0.42 -0.1
92,154 + GFF6417 0.42 +0.1
92,155 - GFF6417 0.42 +2.1
92,155 - GFF6417 0.42 +0.9
92,155 - GFF6417 0.42 -0.3
92,155 - GFF6417 0.42 -1.1
92,155 - GFF6417 0.42 -0.7
92,155 - GFF6417 0.42 -0.4
92,155 - GFF6417 0.42 +0.9
92,155 - GFF6417 0.42 -0.7
92,155 - GFF6417 0.42 +0.1
92,155 - GFF6417 0.42 -0.8
92,155 - GFF6417 0.42 -0.2
92,155 - GFF6417 0.42 +0.4
92,155 - GFF6417 0.42 -0.4
92,241 + GFF6417 0.51 -0.8
92,241 + GFF6417 0.51 -0.5
92,241 + GFF6417 0.51 -0.7
92,241 + GFF6417 0.51 +1.2
92,241 + GFF6417 0.51 +0.4
92,241 + GFF6417 0.51 -1.0
92,241 + GFF6417 0.51 -1.1
92,241 + GFF6417 0.51 -0.2
92,241 + GFF6417 0.51 -0.3
92,241 + GFF6417 0.51 -0.7
92,241 + GFF6417 0.51 -0.1
92,242 - GFF6417 0.51 -2.2
92,242 - GFF6417 0.51 -0.1
92,242 - GFF6417 0.51 -0.0
92,242 - GFF6417 0.51 -1.5
92,242 - GFF6417 0.51 +0.5
92,242 - GFF6417 0.51 -0.5
92,242 - GFF6417 0.51 -0.1
92,242 - GFF6417 0.51 -1.2
92,242 - GFF6417 0.51 +0.6
92,242 - GFF6417 0.51 -0.6
92,242 - GFF6417 0.51 -2.3
92,242 - GFF6417 0.51 +0.3
92,242 - GFF6417 0.51 -1.2
92,242 - GFF6417 0.51 -0.1
92,242 - GFF6417 0.51 -1.5
92,242 - GFF6417 0.51 -0.8
92,242 - GFF6417 0.51 -0.1
92,242 - GFF6417 0.51 +0.2
92,439 + GFF6417 0.71 -0.8
92,439 + GFF6417 0.71 -0.3
92,440 - GFF6417 0.71 +1.9
92,440 - GFF6417 0.71 -0.2
92,440 - GFF6417 0.71 +0.9
92,440 - GFF6417 0.71 -0.5
92,590 - GFF6417 0.86 -0.2
92,590 - GFF6417 0.86 +0.1

Or see this region's nucleotide sequence