Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF635 and GFF636 are separated by 155 nucleotides GFF636 and GFF637 are separated by 229 nucleotides
GFF635 - Urea ABC transporter, permease protein UrtB, at 684,215 to 685,129
GFF635
GFF636 - Urea ABC transporter, substrate-binding protein UrtA, at 685,285 to 686,541
GFF636
GFF637 - Two-component system sensor histidine kinase/response regulator hybrid, at 686,771 to 690,163
GFF637
Position (kb) 685
686
687 Strain fitness (log2 ratio) -2
-1
0
1
2 at 684.424 kb on - strand, within GFF635 at 684.424 kb on - strand, within GFF635 at 684.825 kb on + strand, within GFF635 at 684.826 kb on - strand, within GFF635 at 684.909 kb on + strand, within GFF635 at 684.910 kb on - strand, within GFF635 at 684.910 kb on - strand, within GFF635 at 684.913 kb on - strand, within GFF635 at 684.960 kb on + strand, within GFF635 at 684.961 kb on - strand, within GFF635 at 684.970 kb on - strand, within GFF635 at 685.293 kb on - strand at 685.422 kb on - strand, within GFF636 at 685.528 kb on + strand, within GFF636 at 685.528 kb on + strand, within GFF636 at 685.529 kb on - strand, within GFF636 at 685.533 kb on - strand, within GFF636 at 685.574 kb on + strand, within GFF636 at 685.634 kb on + strand, within GFF636 at 685.635 kb on - strand, within GFF636 at 685.866 kb on - strand, within GFF636 at 685.869 kb on - strand, within GFF636 at 685.869 kb on - strand, within GFF636 at 685.869 kb on - strand, within GFF636 at 685.935 kb on + strand, within GFF636 at 685.936 kb on - strand, within GFF636 at 685.949 kb on + strand, within GFF636 at 685.949 kb on + strand, within GFF636 at 686.045 kb on + strand, within GFF636 at 686.079 kb on - strand, within GFF636 at 686.094 kb on - strand, within GFF636 at 686.656 kb on - strand at 686.816 kb on + strand at 686.852 kb on + strand at 686.864 kb on + strand at 687.050 kb on + strand at 687.053 kb on + strand at 687.054 kb on - strand at 687.234 kb on - strand, within GFF637 at 687.377 kb on + strand, within GFF637 at 687.377 kb on + strand, within GFF637 at 687.377 kb on + strand, within GFF637 at 687.501 kb on - strand, within GFF637
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 684,424 - GFF635 0.23 -0.4 684,424 - GFF635 0.23 -0.5 684,825 + GFF635 0.67 -0.1 684,826 - GFF635 0.67 -0.9 684,909 + GFF635 0.76 -0.1 684,910 - GFF635 0.76 +1.3 684,910 - GFF635 0.76 +0.1 684,913 - GFF635 0.76 -2.0 684,960 + GFF635 0.81 -1.0 684,961 - GFF635 0.82 -0.6 684,970 - GFF635 0.83 +0.3 685,293 - +0.2 685,422 - GFF636 0.11 -0.3 685,528 + GFF636 0.19 +0.0 685,528 + GFF636 0.19 +0.3 685,529 - GFF636 0.19 +0.1 685,533 - GFF636 0.20 +0.6 685,574 + GFF636 0.23 +0.8 685,634 + GFF636 0.28 -1.7 685,635 - GFF636 0.28 +0.2 685,866 - GFF636 0.46 -0.4 685,869 - GFF636 0.46 +0.2 685,869 - GFF636 0.46 -0.6 685,869 - GFF636 0.46 +0.8 685,935 + GFF636 0.52 +0.3 685,936 - GFF636 0.52 +0.3 685,949 + GFF636 0.53 -0.2 685,949 + GFF636 0.53 +0.2 686,045 + GFF636 0.60 -1.0 686,079 - GFF636 0.63 +0.2 686,094 - GFF636 0.64 -0.5 686,656 - -0.5 686,816 + -0.1 686,852 + -0.3 686,864 + -0.4 687,050 + +2.1 687,053 + -2.1 687,054 - +0.7 687,234 - GFF637 0.14 -0.8 687,377 + GFF637 0.18 -0.8 687,377 + GFF637 0.18 +0.1 687,377 + GFF637 0.18 -0.3 687,501 - GFF637 0.22 +0.1
Or see this region's nucleotide sequence