Strain Fitness in Variovorax sp. SCN45 around GFF6319

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
107,822	+		GFF6318	0.41	+0.2
107,822	+		GFF6318	0.41	-0.0
107,822	+		GFF6318	0.41	+1.2
107,822	+		GFF6318	0.41	-1.1
107,823	-		GFF6318	0.41	-0.5
107,823	-		GFF6318	0.41	-0.4
107,823	-		GFF6318	0.41	+0.1
107,823	-		GFF6318	0.41	+0.4
107,823	-		GFF6318	0.41	-0.2
107,823	-		GFF6318	0.41	-0.2
107,825	+		GFF6318	0.41	-0.3
108,080	+		GFF6318	0.58	+0.3
108,119	+		GFF6318	0.60	-0.7
108,119	+		GFF6318	0.60	-1.9
108,119	+		GFF6318	0.60	+2.4
108,119	+		GFF6318	0.60	-0.9
108,120	-		GFF6318	0.60	-0.6
108,120	-		GFF6318	0.60	-0.5
108,120	-		GFF6318	0.60	-0.8
108,146	+		GFF6318	0.62	+1.0
108,146	+		GFF6318	0.62	-1.1
108,146	+		GFF6318	0.62	+0.2
108,146	+		GFF6318	0.62	+4.7
108,146	+		GFF6318	0.62	+1.4
108,146	+		GFF6318	0.62	-0.6
108,146	+		GFF6318	0.62	+0.5
108,146	+		GFF6318	0.62	+1.0
108,146	+		GFF6318	0.62	-0.2
108,146	+		GFF6318	0.62	+1.0
108,146	+		GFF6318	0.62	+0.5
108,146	+		GFF6318	0.62	-0.2
108,146	+		GFF6318	0.62	-0.3
108,147	-		GFF6318	0.62	-0.5
108,147	-		GFF6318	0.62	-1.4
108,147	-		GFF6318	0.62	-0.6
108,147	-		GFF6318	0.62	-0.4
108,147	-		GFF6318	0.62	+0.4
108,147	-		GFF6318	0.62	+0.2
108,147	-		GFF6318	0.62	+0.2
108,147	-		GFF6318	0.62	-0.1
108,147	-		GFF6318	0.62	-0.2
108,147	-		GFF6318	0.62	-0.3
108,147	-		GFF6318	0.62	+0.3
108,147	-		GFF6318	0.62	-0.3
108,147	-		GFF6318	0.62	-0.9
108,161	+		GFF6318	0.63	+0.7
108,161	+		GFF6318	0.63	-1.6
108,161	+		GFF6318	0.63	+0.4
108,161	+		GFF6318	0.63	+0.2
108,161	+		GFF6318	0.63	+0.3
108,161	+		GFF6318	0.63	-0.8
108,161	+		GFF6318	0.63	-0.5
108,161	+		GFF6318	0.63	-0.3
108,161	+		GFF6318	0.63	+0.4
108,161	+		GFF6318	0.63	+0.0
108,161	+		GFF6318	0.63	-0.6
108,161	+		GFF6318	0.63	-1.3
108,161	+		GFF6318	0.63	-1.4
108,161	+		GFF6318	0.63	-1.1
108,161	+		GFF6318	0.63	-0.2
108,161	+		GFF6318	0.63	-0.0
108,161	+		GFF6318	0.63	-0.4
108,161	+		GFF6318	0.63	-0.6
108,162	-		GFF6318	0.63	+0.1
108,162	-		GFF6318	0.63	+1.4
108,162	-		GFF6318	0.63	-0.3
108,162	-		GFF6318	0.63	-1.0
108,162	-		GFF6318	0.63	-0.2
108,162	-		GFF6318	0.63	-0.7
108,162	-		GFF6318	0.63	-1.3
108,162	-		GFF6318	0.63	+0.6
108,162	-		GFF6318	0.63	-1.3
108,162	-		GFF6318	0.63	+0.9
108,162	-		GFF6318	0.63	+0.4
108,162	-		GFF6318	0.63	-0.3
108,162	-		GFF6318	0.63	+0.7
108,162	-		GFF6318	0.63	+0.9
108,162	-		GFF6318	0.63	+1.0
108,162	-		GFF6318	0.63	-0.4
108,162	-		GFF6318	0.63	-0.6
108,162	-		GFF6318	0.63	-0.8
108,162	-		GFF6318	0.63	-0.4
108,162	-		GFF6318	0.63	+0.4
108,162	-		GFF6318	0.63	+1.2
108,162	-		GFF6318	0.63	+0.5
108,162	-		GFF6318	0.63	-0.5
108,162	-		GFF6318	0.63	+1.7
108,162	-		GFF6318	0.63	-0.2
108,162	-		GFF6318	0.63	-0.6
108,162	-		GFF6318	0.63	-0.8
108,162	-		GFF6318	0.63	-0.2
108,162	-		GFF6318	0.63	+0.3
108,162	-		GFF6318	0.63	-0.5
108,162	-		GFF6318	0.63	-0.3
108,162	-		GFF6318	0.63	-0.8
108,162	-		GFF6318	0.63	+0.1
108,162	-		GFF6318	0.63	+0.1
108,713	+				+0.0
108,714	-				+1.0
108,755	+				-1.1
108,765	-				+0.4
109,078	+		GFF6319	0.25	-0.1
109,078	+		GFF6319	0.25	-1.0
109,078	+		GFF6319	0.25	-0.4
109,078	+		GFF6319	0.25	+1.0
109,079	-		GFF6319	0.25	-1.8
109,240	+		GFF6319	0.39	+0.6
109,240	+		GFF6319	0.39	+1.3
109,241	-		GFF6319	0.39	-0.2
109,241	-		GFF6319	0.39	-0.9
109,241	-		GFF6319	0.39	+0.0
109,327	+		GFF6319	0.47	+0.4
109,327	+		GFF6319	0.47	-0.3
109,327	+		GFF6319	0.47	+0.4
109,327	+		GFF6319	0.47	-0.6
109,328	-		GFF6319	0.47	-0.9
109,328	-		GFF6319	0.47	-0.7
109,328	-		GFF6319	0.47	-0.5
109,328	-		GFF6319	0.47	-0.1
109,492	+		GFF6319	0.61	-1.6
109,492	+		GFF6319	0.61	+0.2
109,492	+		GFF6319	0.61	+1.6
109,492	+		GFF6319	0.61	+0.7
109,492	+		GFF6319	0.61	-0.1
109,492	+		GFF6319	0.61	-0.1
109,492	+		GFF6319	0.61	-0.6
109,492	+		GFF6319	0.61	-1.2
109,492	+		GFF6319	0.61	-0.0
109,492	+		GFF6319	0.61	+1.6
109,492	+		GFF6319	0.61	+0.0
109,492	+		GFF6319	0.61	+0.1
109,492	+		GFF6319	0.61	+1.0
109,492	+		GFF6319	0.61	-1.2
109,492	+		GFF6319	0.61	+0.1
109,492	+		GFF6319	0.61	-1.8
109,492	+		GFF6319	0.61	+0.7
109,492	+		GFF6319	0.61	-0.3
109,492	+		GFF6319	0.61	-0.3
109,492	+		GFF6319	0.61	-1.4
109,493	-		GFF6319	0.61	+0.8
109,493	-		GFF6319	0.61	+1.5
109,493	-		GFF6319	0.61	+0.4
109,493	-		GFF6319	0.61	+1.4
109,493	-		GFF6319	0.61	+0.4
109,493	-		GFF6319	0.61	+1.7
109,493	-		GFF6319	0.61	-0.0
109,493	-		GFF6319	0.61	-0.1
109,493	-		GFF6319	0.61	+0.6
109,493	-		GFF6319	0.61	+0.4
109,493	-		GFF6319	0.61	+0.4
109,493	-		GFF6319	0.61	+0.1
109,493	-		GFF6319	0.61	-0.6
109,493	-		GFF6319	0.61	-0.2
109,493	-		GFF6319	0.61	-0.8
109,493	-		GFF6319	0.61	+0.6
109,493	-		GFF6319	0.61	-0.3
109,493	-		GFF6319	0.61	-0.0
109,493	-		GFF6319	0.61	+0.0
109,561	+		GFF6319	0.67	-0.2
109,561	+		GFF6319	0.67	+0.8
109,561	+		GFF6319	0.67	-0.2
109,561	+		GFF6319	0.67	-0.1
109,561	+		GFF6319	0.67	-0.4
109,561	+		GFF6319	0.67	-0.0
109,561	+		GFF6319	0.67	+0.6
109,562	-		GFF6319	0.67	+2.0
109,562	-		GFF6319	0.67	-0.8
109,562	-		GFF6319	0.67	-1.0
109,562	-		GFF6319	0.67	-1.4
109,562	-		GFF6319	0.67	-0.4
109,562	-		GFF6319	0.67	-1.6
109,562	-		GFF6319	0.67	-0.1
109,562	-		GFF6319	0.67	-0.9
109,562	-		GFF6319	0.67	-0.5
109,684	+		GFF6319	0.78	-0.7
109,685	-		GFF6319	0.78	-0.5
109,685	-		GFF6319	0.78	+0.2
109,685	-		GFF6319	0.78	+2.8
109,723	+		GFF6319	0.81	-0.2
109,723	+		GFF6319	0.81	+0.2
109,724	-		GFF6319	0.81	+4.7
109,724	-		GFF6319	0.81	+0.4
109,724	-		GFF6319	0.81	+0.8
109,724	-		GFF6319	0.81	-1.0
109,724	-		GFF6319	0.81	-1.1
109,724	-		GFF6319	0.81	+0.1
109,732	+		GFF6319	0.82	-0.3
109,732	+		GFF6319	0.82	-0.6
109,732	+		GFF6319	0.82	+0.3
109,732	+		GFF6319	0.82	+1.3
109,733	-		GFF6319	0.82	-0.0
109,733	-		GFF6319	0.82	-0.5
109,733	-		GFF6319	0.82	+0.0
109,733	-		GFF6319	0.82	+2.4
109,733	-		GFF6319	0.82	+0.1
109,741	+		GFF6319	0.83	-0.4
109,741	+		GFF6319	0.83	-0.2
109,741	+		GFF6319	0.83	-0.6
109,741	+		GFF6319	0.83	-0.7
109,741	+		GFF6319	0.83	+1.4
109,741	+		GFF6319	0.83	+0.4
109,741	+		GFF6319	0.83	-1.0
109,741	+		GFF6319	0.83	+0.7
109,742	-		GFF6319	0.83	-0.3
109,742	-		GFF6319	0.83	-0.1
109,742	-		GFF6319	0.83	-0.8
109,742	-		GFF6319	0.83	-0.1
109,815	+		GFF6319	0.89	-0.3
109,815	+		GFF6319	0.89	-0.3
109,816	-		GFF6319	0.89	-0.0
109,852	+				+1.4
109,967	+				-0.4
109,967	+				-0.8
109,967	+				+4.1
109,967	+				-0.9
109,967	+				-0.6
109,968	-				+0.2
109,968	-				+0.4
109,968	-				-0.7
109,991	+				-0.8
109,991	+				-0.6
109,991	+				+0.5
109,992	-				-0.4
109,992	-				-0.8
110,177	-		GFF6320	0.24	+1.0
110,281	+		GFF6320	0.38	+1.9
110,299	-		GFF6320	0.40	-1.0
110,548	+		GFF6320	0.74	-0.0
110,548	+		GFF6320	0.74	+0.7
110,548	+		GFF6320	0.74	+0.4
110,548	+		GFF6320	0.74	+0.2
110,548	+		GFF6320	0.74	-0.6
110,548	+		GFF6320	0.74	-0.3
110,549	-		GFF6320	0.74	+0.0
110,549	-		GFF6320	0.74	-0.4
110,549	-		GFF6320	0.74	+2.0
110,549	-		GFF6320	0.74	-0.5
110,549	-		GFF6320	0.74	-0.6
110,549	-		GFF6320	0.74	-1.0
110,712	+				-0.4
110,740	+				-0.5
110,740	+				+0.2
110,743	+				-0.2
110,743	+				-0.6
110,743	+				-0.6
110,743	+				+0.1
110,743	+				-0.4
110,743	+				-1.5
110,743	+				-2.7
110,743	+				-1.9
110,743	+				-0.6
110,743	+				+0.4
110,743	+				+0.0
110,743	+				-0.3
110,743	+				-1.3
110,743	+				-0.5
110,743	+				-0.2
110,743	+				+0.3
110,743	+				+0.0
110,743	+				-1.7
110,743	+				-0.2
110,744	-				-0.8
110,744	-				-1.1
110,744	-				+1.4
110,744	-				-1.1
110,744	-				-1.2
110,744	-				-0.4
110,744	-				-1.6
110,744	-				+0.2
110,744	-				-0.4
110,744	-				-0.6
110,744	-				-1.1
110,744	-				+0.1
110,744	-				+0.4
110,744	-				-0.5
110,744	-				+0.7
110,744	-				+0.6
110,744	-				+0.4
110,744	-				-0.6
110,744	-				-0.6
110,765	+				-0.5
110,766	-				-0.1
110,792	+				-0.6
110,792	+				+0.1
110,792	+				+0.9
110,792	+				+0.4
110,792	+				-0.0
110,792	+				+0.6
110,792	+				-0.3
110,793	-				+0.4
110,797	+				-0.2
110,797	+				+0.0
110,797	+				-0.2
110,797	+				+2.0
110,798	-				-0.0
110,798	-				+0.1
110,880	+				-0.7
110,880	+				+0.3
110,880	+				-0.6
110,880	+				-0.0
110,881	-				+0.7
110,881	-				-0.1
110,881	-				+0.4