Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6308 and GFF6309 are separated by 25 nucleotides GFF6309 and GFF6310 are separated by 7 nucleotides GFF6310 and GFF6311 are separated by 82 nucleotides GFF6311 and GFF6312 are separated by 135 nucleotides
GFF6308 - no description, at 98,259 to 98,534
GFF6308
GFF6309 - Secreted and surface protein containing fasciclin-like repeats, at 98,560 to 99,138
GFF6309
GFF6310 - Transcriptional regulator, LysR family, at 99,146 to 100,072
GFF6310
GFF6311 - hypothetical protein, at 100,155 to 100,487
GFF6311
GFF6312 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 100,623 to 101,801
GFF6312
Position (kb) 99
100
101 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 98.421 kb on + strand, within GFF6308 at 98.477 kb on + strand, within GFF6308 at 98.477 kb on + strand, within GFF6308 at 98.477 kb on + strand, within GFF6308 at 98.478 kb on - strand, within GFF6308 at 98.686 kb on + strand, within GFF6309 at 98.686 kb on + strand, within GFF6309 at 98.686 kb on + strand, within GFF6309 at 98.686 kb on + strand, within GFF6309 at 98.686 kb on + strand, within GFF6309 at 98.687 kb on - strand, within GFF6309 at 98.687 kb on - strand, within GFF6309 at 98.687 kb on - strand, within GFF6309 at 98.905 kb on + strand, within GFF6309 at 98.905 kb on + strand, within GFF6309 at 98.905 kb on + strand, within GFF6309 at 98.905 kb on + strand, within GFF6309 at 98.905 kb on + strand, within GFF6309 at 98.905 kb on + strand, within GFF6309 at 98.905 kb on + strand, within GFF6309 at 98.905 kb on + strand, within GFF6309 at 98.906 kb on - strand, within GFF6309 at 98.906 kb on - strand, within GFF6309 at 98.906 kb on - strand, within GFF6309 at 98.906 kb on - strand, within GFF6309 at 98.906 kb on - strand, within GFF6309 at 98.906 kb on - strand, within GFF6309 at 98.906 kb on - strand, within GFF6309 at 98.906 kb on - strand, within GFF6309 at 98.906 kb on - strand, within GFF6309 at 98.906 kb on - strand, within GFF6309 at 98.906 kb on - strand, within GFF6309 at 98.906 kb on - strand, within GFF6309 at 98.906 kb on - strand, within GFF6309 at 99.085 kb on + strand at 99.085 kb on + strand at 99.085 kb on + strand at 99.085 kb on + strand at 99.085 kb on + strand at 99.085 kb on + strand at 99.085 kb on + strand at 99.085 kb on + strand at 99.086 kb on - strand at 99.086 kb on - strand at 99.086 kb on - strand at 99.086 kb on - strand at 99.086 kb on - strand at 99.240 kb on + strand, within GFF6310 at 99.243 kb on + strand, within GFF6310 at 99.243 kb on + strand, within GFF6310 at 99.243 kb on + strand, within GFF6310 at 99.243 kb on + strand, within GFF6310 at 99.243 kb on + strand, within GFF6310 at 99.244 kb on - strand, within GFF6310 at 99.244 kb on - strand, within GFF6310 at 99.376 kb on - strand, within GFF6310 at 99.376 kb on - strand, within GFF6310 at 99.477 kb on + strand, within GFF6310 at 99.477 kb on + strand, within GFF6310 at 99.478 kb on - strand, within GFF6310 at 100.098 kb on + strand at 100.098 kb on + strand at 100.098 kb on + strand at 100.098 kb on + strand at 100.099 kb on - strand at 100.099 kb on - strand at 100.099 kb on - strand at 100.099 kb on - strand at 100.118 kb on + strand at 100.118 kb on + strand at 100.118 kb on + strand at 100.118 kb on + strand at 100.118 kb on + strand at 100.118 kb on + strand at 100.119 kb on - strand at 100.119 kb on - strand at 100.119 kb on - strand at 100.119 kb on - strand at 100.119 kb on - strand at 100.119 kb on - strand at 100.119 kb on - strand at 100.119 kb on - strand at 100.119 kb on - strand at 100.120 kb on + strand at 100.120 kb on + strand at 100.120 kb on + strand at 100.120 kb on + strand at 100.120 kb on + strand at 100.121 kb on - strand at 100.121 kb on - strand at 100.121 kb on - strand at 100.121 kb on - strand at 100.121 kb on - strand at 100.121 kb on - strand at 100.121 kb on - strand at 100.121 kb on - strand at 100.121 kb on - strand at 100.121 kb on - strand at 100.121 kb on - strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.636 kb on - strand at 100.723 kb on + strand at 100.723 kb on + strand at 100.723 kb on + strand at 100.723 kb on + strand at 100.723 kb on + strand at 100.724 kb on - strand at 100.724 kb on - strand at 100.724 kb on - strand at 100.724 kb on - strand at 100.724 kb on - strand at 101.037 kb on + strand, within GFF6312 at 101.037 kb on + strand, within GFF6312 at 101.037 kb on + strand, within GFF6312 at 101.037 kb on + strand, within GFF6312 at 101.037 kb on + strand, within GFF6312 at 101.037 kb on + strand, within GFF6312 at 101.037 kb on + strand, within GFF6312 at 101.037 kb on + strand, within GFF6312 at 101.037 kb on + strand, within GFF6312 at 101.037 kb on + strand, within GFF6312 at 101.037 kb on + strand, within GFF6312 at 101.037 kb on + strand, within GFF6312 at 101.037 kb on + strand, within GFF6312 at 101.037 kb on + strand, within GFF6312 at 101.037 kb on + strand, within GFF6312 at 101.037 kb on + strand, within GFF6312 at 101.037 kb on + strand, within GFF6312 at 101.037 kb on + strand, within GFF6312 at 101.037 kb on + strand, within GFF6312 at 101.037 kb on + strand, within GFF6312 at 101.037 kb on + strand, within GFF6312 at 101.037 kb on + strand, within GFF6312 at 101.037 kb on + strand, within GFF6312 at 101.037 kb on + strand, within GFF6312 at 101.037 kb on + strand, within GFF6312 at 101.037 kb on + strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.038 kb on - strand, within GFF6312 at 101.061 kb on - strand, within GFF6312
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 98,421 + GFF6308 0.59 -0.4 98,477 + GFF6308 0.79 -0.9 98,477 + GFF6308 0.79 -0.6 98,477 + GFF6308 0.79 -0.0 98,478 - GFF6308 0.79 -0.8 98,686 + GFF6309 0.22 +0.4 98,686 + GFF6309 0.22 -0.6 98,686 + GFF6309 0.22 +0.7 98,686 + GFF6309 0.22 +0.4 98,686 + GFF6309 0.22 -0.5 98,687 - GFF6309 0.22 +0.0 98,687 - GFF6309 0.22 +1.0 98,687 - GFF6309 0.22 -0.9 98,905 + GFF6309 0.60 -1.2 98,905 + GFF6309 0.60 -0.3 98,905 + GFF6309 0.60 +0.5 98,905 + GFF6309 0.60 -0.7 98,905 + GFF6309 0.60 +0.4 98,905 + GFF6309 0.60 -0.9 98,905 + GFF6309 0.60 -0.3 98,905 + GFF6309 0.60 -0.1 98,906 - GFF6309 0.60 -0.8 98,906 - GFF6309 0.60 +0.5 98,906 - GFF6309 0.60 +0.8 98,906 - GFF6309 0.60 +0.3 98,906 - GFF6309 0.60 +0.2 98,906 - GFF6309 0.60 -0.0 98,906 - GFF6309 0.60 +0.4 98,906 - GFF6309 0.60 -1.0 98,906 - GFF6309 0.60 +1.0 98,906 - GFF6309 0.60 -0.3 98,906 - GFF6309 0.60 -1.1 98,906 - GFF6309 0.60 -0.4 98,906 - GFF6309 0.60 -0.7 99,085 + -0.6 99,085 + +2.3 99,085 + -0.9 99,085 + -0.3 99,085 + -0.8 99,085 + -0.8 99,085 + -0.3 99,085 + +0.1 99,086 - -0.1 99,086 - -0.3 99,086 - -0.1 99,086 - -0.5 99,086 - -0.5 99,240 + GFF6310 0.10 -0.2 99,243 + GFF6310 0.10 -1.1 99,243 + GFF6310 0.10 -0.1 99,243 + GFF6310 0.10 -1.1 99,243 + GFF6310 0.10 +1.4 99,243 + GFF6310 0.10 -0.7 99,244 - GFF6310 0.11 -0.8 99,244 - GFF6310 0.11 -0.8 99,376 - GFF6310 0.25 -0.3 99,376 - GFF6310 0.25 -0.3 99,477 + GFF6310 0.36 -0.6 99,477 + GFF6310 0.36 -0.1 99,478 - GFF6310 0.36 -0.1 100,098 + -0.2 100,098 + -0.4 100,098 + +0.5 100,098 + +0.5 100,099 - -0.4 100,099 - -0.0 100,099 - +0.5 100,099 - +0.4 100,118 + -1.1 100,118 + -0.3 100,118 + -0.5 100,118 + -0.3 100,118 + -0.1 100,118 + -1.6 100,119 - +1.1 100,119 - -1.0 100,119 - -0.3 100,119 - -0.8 100,119 - -0.7 100,119 - +1.3 100,119 - -0.1 100,119 - -0.2 100,119 - +1.6 100,120 + +1.3 100,120 + +0.5 100,120 + -0.5 100,120 + -0.0 100,120 + +0.2 100,121 - +0.3 100,121 - +1.4 100,121 - +0.1 100,121 - -1.4 100,121 - +0.1 100,121 - +0.6 100,121 - +0.8 100,121 - +0.3 100,121 - -0.1 100,121 - -0.7 100,121 - -0.4 100,635 + -0.1 100,635 + +0.2 100,635 + -0.6 100,635 + -0.5 100,635 + -0.3 100,635 + +0.5 100,635 + +1.4 100,635 + +0.8 100,635 + -0.2 100,635 + -0.7 100,635 + -0.6 100,635 + -0.9 100,635 + -0.1 100,635 + +0.0 100,635 + -0.1 100,635 + -0.9 100,635 + -1.1 100,635 + -0.8 100,635 + -0.6 100,635 + -1.7 100,635 + -0.7 100,635 + +0.8 100,635 + -0.7 100,635 + -0.3 100,635 + -0.6 100,635 + -0.4 100,635 + +0.0 100,635 + -0.6 100,635 + +0.1 100,635 + +0.3 100,635 + +0.0 100,635 + -0.5 100,635 + -1.0 100,635 + -0.5 100,635 + -0.5 100,635 + +0.6 100,635 + -0.4 100,635 + -0.1 100,635 + +0.5 100,635 + +0.3 100,635 + +0.6 100,635 + -0.1 100,635 + +0.5 100,635 + -0.7 100,635 + +0.8 100,635 + -0.0 100,635 + -0.8 100,635 + -0.6 100,635 + -0.4 100,635 + +0.7 100,635 + -0.3 100,635 + +0.1 100,635 + +1.0 100,636 - -0.2 100,636 - -0.2 100,636 - -1.0 100,636 - +0.2 100,636 - -0.3 100,636 - -0.4 100,636 - +0.1 100,636 - -0.7 100,636 - +1.0 100,636 - +0.3 100,636 - -0.0 100,636 - -0.2 100,636 - -1.3 100,636 - +0.4 100,636 - +0.0 100,636 - -0.3 100,636 - -1.4 100,636 - -1.6 100,636 - -0.3 100,636 - -0.4 100,636 - -0.0 100,636 - -0.4 100,636 - +0.8 100,636 - -0.4 100,636 - +0.3 100,636 - +0.2 100,636 - +1.0 100,636 - -0.2 100,636 - -0.4 100,636 - +0.4 100,636 - -0.3 100,636 - -0.4 100,636 - +0.6 100,636 - -0.7 100,636 - +0.3 100,636 - -0.2 100,636 - -0.4 100,636 - -0.1 100,636 - -1.0 100,636 - +0.5 100,636 - +0.1 100,636 - -0.1 100,636 - -0.4 100,636 - +0.6 100,636 - -0.4 100,636 - -1.1 100,636 - -0.4 100,636 - +0.2 100,636 - -0.4 100,636 - -1.5 100,636 - -0.8 100,636 - -0.4 100,636 - -0.7 100,636 - +0.7 100,636 - -0.1 100,636 - +0.4 100,636 - -0.9 100,636 - -0.9 100,636 - -1.3 100,636 - -1.1 100,636 - +0.0 100,636 - -1.6 100,636 - -2.0 100,636 - +0.1 100,636 - -0.5 100,723 + +0.2 100,723 + -1.0 100,723 + -0.9 100,723 + -1.1 100,723 + +1.4 100,724 - -1.4 100,724 - +0.3 100,724 - -2.1 100,724 - +0.2 100,724 - +0.6 101,037 + GFF6312 0.35 -0.4 101,037 + GFF6312 0.35 +0.3 101,037 + GFF6312 0.35 -0.3 101,037 + GFF6312 0.35 -0.5 101,037 + GFF6312 0.35 -1.1 101,037 + GFF6312 0.35 -0.1 101,037 + GFF6312 0.35 +0.6 101,037 + GFF6312 0.35 +0.1 101,037 + GFF6312 0.35 +0.4 101,037 + GFF6312 0.35 -0.6 101,037 + GFF6312 0.35 -0.6 101,037 + GFF6312 0.35 +1.4 101,037 + GFF6312 0.35 -0.6 101,037 + GFF6312 0.35 -0.4 101,037 + GFF6312 0.35 +0.4 101,037 + GFF6312 0.35 +0.4 101,037 + GFF6312 0.35 -0.1 101,037 + GFF6312 0.35 -0.6 101,037 + GFF6312 0.35 +0.4 101,037 + GFF6312 0.35 +0.1 101,037 + GFF6312 0.35 -0.5 101,037 + GFF6312 0.35 +0.4 101,037 + GFF6312 0.35 +0.9 101,037 + GFF6312 0.35 -1.4 101,037 + GFF6312 0.35 -0.6 101,037 + GFF6312 0.35 -0.3 101,038 - GFF6312 0.35 +0.9 101,038 - GFF6312 0.35 +1.1 101,038 - GFF6312 0.35 -1.6 101,038 - GFF6312 0.35 -1.0 101,038 - GFF6312 0.35 -0.2 101,038 - GFF6312 0.35 -0.2 101,038 - GFF6312 0.35 +0.9 101,038 - GFF6312 0.35 -0.3 101,038 - GFF6312 0.35 +0.7 101,038 - GFF6312 0.35 -0.8 101,038 - GFF6312 0.35 -0.8 101,038 - GFF6312 0.35 +0.1 101,038 - GFF6312 0.35 -0.6 101,038 - GFF6312 0.35 +0.1 101,038 - GFF6312 0.35 +0.1 101,038 - GFF6312 0.35 +0.8 101,038 - GFF6312 0.35 -0.3 101,038 - GFF6312 0.35 +0.3 101,038 - GFF6312 0.35 -0.3 101,038 - GFF6312 0.35 -0.1 101,038 - GFF6312 0.35 -0.2 101,038 - GFF6312 0.35 +0.2 101,038 - GFF6312 0.35 -0.7 101,038 - GFF6312 0.35 -0.4 101,038 - GFF6312 0.35 -1.1 101,038 - GFF6312 0.35 -0.1 101,038 - GFF6312 0.35 -0.1 101,038 - GFF6312 0.35 +0.7 101,038 - GFF6312 0.35 -0.6 101,038 - GFF6312 0.35 +4.6 101,038 - GFF6312 0.35 +1.0 101,038 - GFF6312 0.35 +2.0 101,038 - GFF6312 0.35 -0.9 101,038 - GFF6312 0.35 -0.7 101,061 - GFF6312 0.37 +0.1
Or see this region's nucleotide sequence