Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6263 and GFF6264 overlap by 4 nucleotides GFF6264 and GFF6265 overlap by 19 nucleotides GFF6265 and GFF6266 are separated by 21 nucleotides GFF6266 and GFF6267 are separated by 64 nucleotides
GFF6263 - Uncharacterized protein Atu0170, clustered with phosphonate utilization, at 55,403 to 56,137
GFF6263
GFF6264 - Ribose 1,5-bisphosphate phosphokinase PhnN (EC 2.7.4.23), at 56,134 to 56,727
GFF6264
GFF6265 - Thiamine-monophosphate kinase (EC 2.7.4.16), at 56,709 to 57,665
GFF6265
GFF6266 - putative lipoprotein, at 57,687 to 58,367
GFF6266
GFF6267 - Transcriptional regulator, LysR family, at 58,432 to 59,328
GFF6267
Position (kb) 56
57
58 Strain fitness (log2 ratio) -1
0
1
2 at 55.917 kb on - strand, within GFF6263 at 56.152 kb on + strand at 56.152 kb on + strand at 56.153 kb on - strand at 56.153 kb on - strand at 56.153 kb on - strand at 56.368 kb on + strand, within GFF6264 at 56.369 kb on - strand, within GFF6264 at 56.440 kb on + strand, within GFF6264 at 56.440 kb on + strand, within GFF6264 at 56.441 kb on - strand, within GFF6264 at 56.592 kb on - strand, within GFF6264 at 56.697 kb on + strand at 56.697 kb on + strand at 56.698 kb on - strand at 56.698 kb on - strand at 57.946 kb on + strand, within GFF6266 at 57.946 kb on + strand, within GFF6266 at 57.946 kb on + strand, within GFF6266 at 57.946 kb on + strand, within GFF6266 at 57.947 kb on - strand, within GFF6266 at 57.958 kb on + strand, within GFF6266 at 57.959 kb on - strand, within GFF6266 at 58.192 kb on + strand, within GFF6266 at 58.192 kb on + strand, within GFF6266 at 58.192 kb on + strand, within GFF6266 at 58.193 kb on - strand, within GFF6266 at 58.193 kb on - strand, within GFF6266 at 58.193 kb on - strand, within GFF6266 at 58.193 kb on - strand, within GFF6266 at 58.204 kb on + strand, within GFF6266 at 58.205 kb on - strand, within GFF6266 at 58.512 kb on + strand at 58.512 kb on + strand at 58.512 kb on + strand at 58.513 kb on - strand at 58.513 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 55,917 - GFF6263 0.70 -0.5 56,152 + +1.2 56,152 + +1.0 56,153 - +1.8 56,153 - -1.0 56,153 - -0.6 56,368 + GFF6264 0.39 -1.1 56,369 - GFF6264 0.40 -0.2 56,440 + GFF6264 0.52 -0.2 56,440 + GFF6264 0.52 -0.8 56,441 - GFF6264 0.52 -0.8 56,592 - GFF6264 0.77 +0.1 56,697 + -1.4 56,697 + +0.0 56,698 - -0.4 56,698 - -0.2 57,946 + GFF6266 0.38 +1.0 57,946 + GFF6266 0.38 -0.3 57,946 + GFF6266 0.38 -1.0 57,946 + GFF6266 0.38 -0.5 57,947 - GFF6266 0.38 +0.2 57,958 + GFF6266 0.40 +0.7 57,959 - GFF6266 0.40 -1.1 58,192 + GFF6266 0.74 +0.0 58,192 + GFF6266 0.74 +0.2 58,192 + GFF6266 0.74 -1.2 58,193 - GFF6266 0.74 -0.3 58,193 - GFF6266 0.74 +0.3 58,193 - GFF6266 0.74 -0.5 58,193 - GFF6266 0.74 +0.8 58,204 + GFF6266 0.76 +0.4 58,205 - GFF6266 0.76 +0.7 58,512 + -0.8 58,512 + -0.9 58,512 + +0.4 58,513 - +0.1 58,513 - +0.8
Or see this region's nucleotide sequence