Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6204 and GFF6205 are separated by 126 nucleotides GFF6205 and GFF6206 are separated by 9 nucleotides GFF6206 and GFF6207 are separated by 14 nucleotides GFF6207 and GFF6208 are separated by 31 nucleotides
GFF6204 - Diguanylate cyclase/phosphodiesterase domain 2 (EAL), at 111,296 to 113,068
GFF6204
GFF6205 - FIG00983767: hypothetical protein, at 113,195 to 113,755
GFF6205
GFF6206 - Transcriptional regulator, GntR family, at 113,765 to 114,529
GFF6206
GFF6207 - Allantoin racemase (EC 5.1.99.3), at 114,544 to 115,281
GFF6207
GFF6208 - Cytosine/purine/uracil/thiamine/allantoin permease family protein, at 115,313 to 116,806
GFF6208
Position (kb) 113
114
115 Strain fitness (log2 ratio) -1
0
1
2 at 113.360 kb on - strand, within GFF6205 at 113.840 kb on - strand at 113.955 kb on + strand, within GFF6206 at 114.142 kb on - strand, within GFF6206 at 114.337 kb on - strand, within GFF6206 at 114.545 kb on + strand at 114.545 kb on + strand at 114.890 kb on + strand, within GFF6207 at 114.891 kb on - strand, within GFF6207 at 114.891 kb on - strand, within GFF6207 at 115.344 kb on + strand at 115.383 kb on + strand at 115.383 kb on + strand at 115.383 kb on + strand at 115.384 kb on - strand at 115.384 kb on - strand at 115.384 kb on - strand at 115.384 kb on - strand at 115.473 kb on + strand, within GFF6208 at 115.491 kb on + strand, within GFF6208 at 115.492 kb on - strand, within GFF6208 at 115.492 kb on - strand, within GFF6208 at 115.515 kb on + strand, within GFF6208 at 115.515 kb on + strand, within GFF6208 at 115.515 kb on + strand, within GFF6208 at 115.516 kb on - strand, within GFF6208
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 113,360 - GFF6205 0.29 -0.3 113,840 - -0.0 113,955 + GFF6206 0.25 -1.2 114,142 - GFF6206 0.49 -1.4 114,337 - GFF6206 0.75 -0.2 114,545 + +0.6 114,545 + -0.6 114,890 + GFF6207 0.47 -0.4 114,891 - GFF6207 0.47 -0.3 114,891 - GFF6207 0.47 -1.5 115,344 + +0.4 115,383 + -0.5 115,383 + +0.0 115,383 + +2.5 115,384 - +0.2 115,384 - +1.1 115,384 - -0.1 115,384 - -0.6 115,473 + GFF6208 0.11 -0.9 115,491 + GFF6208 0.12 -0.0 115,492 - GFF6208 0.12 -0.3 115,492 - GFF6208 0.12 -0.7 115,515 + GFF6208 0.14 -0.5 115,515 + GFF6208 0.14 +0.4 115,515 + GFF6208 0.14 -0.6 115,516 - GFF6208 0.14 +0.4
Or see this region's nucleotide sequence