Strain Fitness in Variovorax sp. SCN45 around GFF62

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF61 and GFF62 are separated by 16 nucleotidesGFF62 and GFF63 are separated by 7 nucleotides GFF61 - GDP-mannose 4,6-dehydratase (EC 4.2.1.47), at 76,935 to 78,059 GFF61 GFF62 - hypothetical protein, at 78,076 to 79,422 GFF62 GFF63 - Putative glycosyltransferase, at 79,430 to 80,512 GFF63 Position (kb) 78 79 80Strain fitness (log2 ratio) -2 -1 0 1 2 3at 77.077 kb on - strand, within GFF61at 77.187 kb on + strand, within GFF61at 77.188 kb on - strand, within GFF61at 77.322 kb on + strand, within GFF61at 77.323 kb on - strand, within GFF61at 77.323 kb on - strand, within GFF61at 77.347 kb on - strand, within GFF61at 77.392 kb on - strand, within GFF61at 77.424 kb on + strand, within GFF61at 77.424 kb on + strand, within GFF61at 77.448 kb on + strand, within GFF61at 77.449 kb on - strand, within GFF61at 77.460 kb on + strand, within GFF61at 77.461 kb on - strand, within GFF61at 77.461 kb on - strand, within GFF61at 77.461 kb on - strand, within GFF61at 77.469 kb on + strand, within GFF61at 77.470 kb on - strand, within GFF61at 77.634 kb on + strand, within GFF61at 77.634 kb on + strand, within GFF61at 77.682 kb on + strand, within GFF61at 77.683 kb on - strand, within GFF61at 77.683 kb on - strand, within GFF61at 77.706 kb on + strand, within GFF61at 78.247 kb on + strand, within GFF62at 78.356 kb on - strand, within GFF62at 78.356 kb on - strand, within GFF62at 78.356 kb on - strand, within GFF62at 78.356 kb on - strand, within GFF62at 78.356 kb on - strand, within GFF62at 78.356 kb on - strand, within GFF62at 79.114 kb on + strand, within GFF62at 79.114 kb on + strand, within GFF62at 79.252 kb on + strand, within GFF62at 79.253 kb on - strand, within GFF62at 79.439 kb on + strandat 79.439 kb on + strandat 79.439 kb on + strandat 79.440 kb on - strandat 79.440 kb on - strandat 79.440 kb on - strandat 79.448 kb on + strandat 79.449 kb on - strandat 79.449 kb on - strandat 79.574 kb on + strand, within GFF63at 79.574 kb on + strand, within GFF63at 79.575 kb on - strand, within GFF63at 79.575 kb on - strand, within GFF63at 79.628 kb on + strand, within GFF63at 79.628 kb on + strand, within GFF63at 79.629 kb on - strand, within GFF63at 79.629 kb on - strand, within GFF63at 79.629 kb on - strand, within GFF63at 79.637 kb on + strand, within GFF63at 79.673 kb on + strand, within GFF63at 79.673 kb on + strand, within GFF63at 79.691 kb on + strand, within GFF63at 79.757 kb on + strand, within GFF63at 79.757 kb on + strand, within GFF63at 79.757 kb on + strand, within GFF63at 79.758 kb on - strand, within GFF63at 79.758 kb on - strand, within GFF63at 79.758 kb on - strand, within GFF63at 79.758 kb on - strand, within GFF63at 79.758 kb on - strand, within GFF63at 79.758 kb on - strand, within GFF63at 79.766 kb on + strand, within GFF63at 79.776 kb on - strand, within GFF63at 80.000 kb on + strand, within GFF63at 80.006 kb on + strand, within GFF63at 80.006 kb on + strand, within GFF63at 80.006 kb on + strand, within GFF63at 80.007 kb on - strand, within GFF63at 80.007 kb on - strand, within GFF63at 80.202 kb on - strand, within GFF63at 80.202 kb on - strand, within GFF63at 80.369 kb on + strand, within GFF63at 80.369 kb on + strand, within GFF63at 80.370 kb on - strand, within GFF63at 80.384 kb on + strand, within GFF63

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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77,077 - GFF61 0.13 +0.6
77,187 + GFF61 0.22 -0.8
77,188 - GFF61 0.22 +0.2
77,322 + GFF61 0.34 -0.3
77,323 - GFF61 0.34 -0.2
77,323 - GFF61 0.34 +1.8
77,347 - GFF61 0.37 +0.3
77,392 - GFF61 0.41 -0.7
77,424 + GFF61 0.43 +1.2
77,424 + GFF61 0.43 +0.1
77,448 + GFF61 0.46 -0.2
77,449 - GFF61 0.46 -0.0
77,460 + GFF61 0.47 -0.3
77,461 - GFF61 0.47 -0.8
77,461 - GFF61 0.47 -0.2
77,461 - GFF61 0.47 +1.8
77,469 + GFF61 0.47 -0.0
77,470 - GFF61 0.48 +0.5
77,634 + GFF61 0.62 +1.5
77,634 + GFF61 0.62 +0.2
77,682 + GFF61 0.66 -0.1
77,683 - GFF61 0.66 -0.5
77,683 - GFF61 0.66 -2.1
77,706 + GFF61 0.69 +0.8
78,247 + GFF62 0.13 +2.4
78,356 - GFF62 0.21 +0.7
78,356 - GFF62 0.21 +0.1
78,356 - GFF62 0.21 +0.8
78,356 - GFF62 0.21 -0.2
78,356 - GFF62 0.21 +1.0
78,356 - GFF62 0.21 +0.3
79,114 + GFF62 0.77 -0.4
79,114 + GFF62 0.77 -1.4
79,252 + GFF62 0.87 +2.8
79,253 - GFF62 0.87 +0.2
79,439 + -0.9
79,439 + +1.3
79,439 + -0.6
79,440 - -0.8
79,440 - -1.3
79,440 - -1.0
79,448 + -0.3
79,449 - +0.3
79,449 - -0.5
79,574 + GFF63 0.13 +0.6
79,574 + GFF63 0.13 -0.1
79,575 - GFF63 0.13 +1.8
79,575 - GFF63 0.13 -0.1
79,628 + GFF63 0.18 +0.8
79,628 + GFF63 0.18 +0.2
79,629 - GFF63 0.18 +0.1
79,629 - GFF63 0.18 -0.4
79,629 - GFF63 0.18 +0.6
79,637 + GFF63 0.19 +0.7
79,673 + GFF63 0.22 -0.3
79,673 + GFF63 0.22 -2.0
79,691 + GFF63 0.24 +0.5
79,757 + GFF63 0.30 -0.0
79,757 + GFF63 0.30 -1.3
79,757 + GFF63 0.30 -0.6
79,758 - GFF63 0.30 +1.4
79,758 - GFF63 0.30 -0.2
79,758 - GFF63 0.30 -0.8
79,758 - GFF63 0.30 -0.0
79,758 - GFF63 0.30 +0.0
79,758 - GFF63 0.30 -0.8
79,766 + GFF63 0.31 +1.3
79,776 - GFF63 0.32 +0.3
80,000 + GFF63 0.53 +0.6
80,006 + GFF63 0.53 -1.5
80,006 + GFF63 0.53 +0.2
80,006 + GFF63 0.53 -0.6
80,007 - GFF63 0.53 -1.0
80,007 - GFF63 0.53 +1.4
80,202 - GFF63 0.71 -1.2
80,202 - GFF63 0.71 +1.1
80,369 + GFF63 0.87 +0.3
80,369 + GFF63 0.87 -0.1
80,370 - GFF63 0.87 +0.2
80,384 + GFF63 0.88 +0.2

Or see this region's nucleotide sequence