Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6147 and GFF6148 are separated by 6 nucleotides GFF6148 and GFF6149 are separated by 38 nucleotides GFF6149 and GFF6150 are separated by 21 nucleotides
GFF6147 - Phosphonoacetaldehyde dehydrogenase (NAD+), at 51,511 to 52,959
GFF6147
GFF6148 - hypothetical protein, at 52,966 to 53,532
GFF6148
GFF6149 - FAD-dependent oxidoreductase, at 53,571 to 54,959
GFF6149
GFF6150 - Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), at 54,981 to 56,336
GFF6150
Position (kb) 53
54
55 Strain fitness (log2 ratio) -2
-1
0
1
2 at 52.607 kb on - strand, within GFF6147 at 52.607 kb on - strand, within GFF6147 at 52.761 kb on + strand, within GFF6147 at 53.023 kb on + strand, within GFF6148 at 53.476 kb on + strand at 53.476 kb on + strand at 53.476 kb on + strand at 53.477 kb on - strand at 53.477 kb on - strand at 53.480 kb on - strand at 53.492 kb on + strand at 53.695 kb on + strand at 53.695 kb on + strand at 54.025 kb on - strand, within GFF6149 at 54.091 kb on - strand, within GFF6149 at 54.091 kb on - strand, within GFF6149 at 54.244 kb on + strand, within GFF6149 at 54.245 kb on - strand, within GFF6149 at 54.424 kb on - strand, within GFF6149 at 54.426 kb on + strand, within GFF6149 at 54.426 kb on + strand, within GFF6149 at 54.426 kb on + strand, within GFF6149 at 54.426 kb on + strand, within GFF6149 at 54.427 kb on - strand, within GFF6149 at 54.427 kb on - strand, within GFF6149 at 54.427 kb on - strand, within GFF6149 at 54.430 kb on - strand, within GFF6149 at 54.528 kb on + strand, within GFF6149 at 54.528 kb on + strand, within GFF6149 at 54.529 kb on - strand, within GFF6149 at 54.672 kb on + strand, within GFF6149 at 54.672 kb on + strand, within GFF6149 at 54.672 kb on + strand, within GFF6149 at 54.672 kb on + strand, within GFF6149 at 54.672 kb on + strand, within GFF6149 at 54.672 kb on + strand, within GFF6149 at 54.673 kb on - strand, within GFF6149 at 54.673 kb on - strand, within GFF6149 at 54.673 kb on - strand, within GFF6149 at 54.673 kb on - strand, within GFF6149 at 54.714 kb on + strand, within GFF6149 at 54.714 kb on + strand, within GFF6149 at 54.714 kb on + strand, within GFF6149 at 54.715 kb on - strand, within GFF6149 at 54.715 kb on - strand, within GFF6149 at 54.715 kb on - strand, within GFF6149 at 54.715 kb on - strand, within GFF6149 at 54.825 kb on + strand at 54.825 kb on + strand at 54.825 kb on + strand at 55.093 kb on + strand at 55.094 kb on - strand at 55.094 kb on - strand at 55.094 kb on - strand at 55.094 kb on - strand at 55.094 kb on - strand at 55.094 kb on - strand at 55.094 kb on - strand at 55.094 kb on - strand at 55.094 kb on - strand at 55.129 kb on + strand, within GFF6150 at 55.345 kb on + strand, within GFF6150 at 55.346 kb on - strand, within GFF6150 at 55.351 kb on + strand, within GFF6150 at 55.351 kb on + strand, within GFF6150 at 55.375 kb on + strand, within GFF6150 at 55.376 kb on - strand, within GFF6150 at 55.376 kb on - strand, within GFF6150 at 55.376 kb on - strand, within GFF6150 at 55.376 kb on - strand, within GFF6150 at 55.408 kb on + strand, within GFF6150 at 55.408 kb on + strand, within GFF6150 at 55.409 kb on - strand, within GFF6150 at 55.606 kb on + strand, within GFF6150 at 55.852 kb on + strand, within GFF6150 at 55.853 kb on - strand, within GFF6150 at 55.853 kb on - strand, within GFF6150 at 55.853 kb on - strand, within GFF6150
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 52,607 - GFF6147 0.76 +0.5 52,607 - GFF6147 0.76 -0.9 52,761 + GFF6147 0.86 -0.8 53,023 + GFF6148 0.10 -0.6 53,476 + -0.1 53,476 + -0.2 53,476 + +0.3 53,477 - -0.2 53,477 - -0.5 53,480 - -0.8 53,492 + -0.8 53,695 + +0.4 53,695 + -1.0 54,025 - GFF6149 0.33 +0.6 54,091 - GFF6149 0.37 -0.0 54,091 - GFF6149 0.37 -0.3 54,244 + GFF6149 0.48 -0.1 54,245 - GFF6149 0.49 -0.5 54,424 - GFF6149 0.61 +0.1 54,426 + GFF6149 0.62 +1.2 54,426 + GFF6149 0.62 -0.0 54,426 + GFF6149 0.62 +0.3 54,426 + GFF6149 0.62 +0.9 54,427 - GFF6149 0.62 -0.5 54,427 - GFF6149 0.62 -0.8 54,427 - GFF6149 0.62 -0.3 54,430 - GFF6149 0.62 -0.5 54,528 + GFF6149 0.69 +0.2 54,528 + GFF6149 0.69 -0.2 54,529 - GFF6149 0.69 -0.6 54,672 + GFF6149 0.79 +0.2 54,672 + GFF6149 0.79 +0.4 54,672 + GFF6149 0.79 +0.1 54,672 + GFF6149 0.79 +0.7 54,672 + GFF6149 0.79 -0.8 54,672 + GFF6149 0.79 -0.4 54,673 - GFF6149 0.79 -0.2 54,673 - GFF6149 0.79 +0.0 54,673 - GFF6149 0.79 -0.6 54,673 - GFF6149 0.79 +0.6 54,714 + GFF6149 0.82 +1.4 54,714 + GFF6149 0.82 +0.1 54,714 + GFF6149 0.82 +0.5 54,715 - GFF6149 0.82 -0.3 54,715 - GFF6149 0.82 +0.3 54,715 - GFF6149 0.82 -1.5 54,715 - GFF6149 0.82 -0.6 54,825 + -0.7 54,825 + +1.1 54,825 + -0.1 55,093 + +1.9 55,094 - -1.0 55,094 - -0.8 55,094 - -0.6 55,094 - +2.1 55,094 - -0.4 55,094 - -1.1 55,094 - +0.1 55,094 - +0.4 55,094 - -1.2 55,129 + GFF6150 0.11 -0.0 55,345 + GFF6150 0.27 -1.1 55,346 - GFF6150 0.27 -0.3 55,351 + GFF6150 0.27 +0.1 55,351 + GFF6150 0.27 -0.3 55,375 + GFF6150 0.29 +0.4 55,376 - GFF6150 0.29 -0.8 55,376 - GFF6150 0.29 +0.3 55,376 - GFF6150 0.29 +0.4 55,376 - GFF6150 0.29 +0.7 55,408 + GFF6150 0.31 +0.0 55,408 + GFF6150 0.31 -0.6 55,409 - GFF6150 0.32 -0.1 55,606 + GFF6150 0.46 -1.1 55,852 + GFF6150 0.64 -0.8 55,853 - GFF6150 0.64 -1.8 55,853 - GFF6150 0.64 -0.3 55,853 - GFF6150 0.64 -1.1
Or see this region's nucleotide sequence