Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6122 and GFF6123 overlap by 4 nucleotides GFF6123 and GFF6124 are separated by 4 nucleotides GFF6124 and GFF6125 overlap by 4 nucleotides
GFF6122 - ABC-type antimicrobial peptide transport system, permease component, at 23,598 to 24,860
GFF6122
GFF6123 - ABC-type antimicrobial peptide transport system, ATPase component, at 24,857 to 25,603
GFF6123
GFF6124 - Predicted zinc-binding protein, at 25,608 to 26,186
GFF6124
GFF6125 - Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1), at 26,183 to 27,091
GFF6125
Position (kb) 24
25
26 Strain fitness (log2 ratio) -2
-1
0
1 at 24.074 kb on - strand, within GFF6122 at 24.074 kb on - strand, within GFF6122 at 24.502 kb on + strand, within GFF6122 at 24.652 kb on + strand, within GFF6122 at 24.652 kb on + strand, within GFF6122 at 24.652 kb on + strand, within GFF6122 at 24.652 kb on + strand, within GFF6122 at 25.308 kb on + strand, within GFF6123 at 25.309 kb on - strand, within GFF6123 at 25.309 kb on - strand, within GFF6123 at 26.250 kb on + strand at 26.250 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 24,074 - GFF6122 0.38 +0.1 24,074 - GFF6122 0.38 -1.8 24,502 + GFF6122 0.72 +0.4 24,652 + GFF6122 0.83 +0.2 24,652 + GFF6122 0.83 +1.1 24,652 + GFF6122 0.83 +0.4 24,652 + GFF6122 0.83 +0.0 25,308 + GFF6123 0.60 +0.7 25,309 - GFF6123 0.61 +0.3 25,309 - GFF6123 0.61 -0.4 26,250 + -0.4 26,250 + -0.3
Or see this region's nucleotide sequence