Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6082 and GFF6083 overlap by 20 nucleotides GFF6083 and GFF6084 overlap by 4 nucleotides
GFF6082 - MoxR-like ATPase in aerotolerance operon, at 144,126 to 145,139
GFF6082
GFF6083 - hypothetical protein PA3071, at 145,120 to 146,109
GFF6083
GFF6084 - Aerotolerance protein BatA, at 146,106 to 147,143
GFF6084
Position (kb) 145
146
147 Strain fitness (log2 ratio) -1
0
1
2 at 144.189 kb on + strand at 144.402 kb on + strand, within GFF6082 at 144.402 kb on + strand, within GFF6082 at 144.402 kb on + strand, within GFF6082 at 144.402 kb on + strand, within GFF6082 at 144.403 kb on - strand, within GFF6082 at 144.618 kb on + strand, within GFF6082 at 144.618 kb on + strand, within GFF6082 at 144.618 kb on + strand, within GFF6082 at 144.619 kb on - strand, within GFF6082 at 144.792 kb on + strand, within GFF6082 at 144.792 kb on + strand, within GFF6082 at 144.792 kb on + strand, within GFF6082 at 144.792 kb on + strand, within GFF6082 at 144.792 kb on + strand, within GFF6082 at 144.792 kb on + strand, within GFF6082 at 144.793 kb on - strand, within GFF6082 at 144.967 kb on - strand, within GFF6082 at 144.967 kb on - strand, within GFF6082 at 145.032 kb on + strand, within GFF6082 at 145.032 kb on + strand, within GFF6082 at 145.033 kb on - strand, within GFF6082 at 145.033 kb on - strand, within GFF6082 at 145.137 kb on + strand at 145.137 kb on + strand at 145.138 kb on - strand at 145.138 kb on - strand at 145.310 kb on - strand, within GFF6083 at 145.310 kb on - strand, within GFF6083 at 145.310 kb on - strand, within GFF6083 at 145.546 kb on + strand, within GFF6083 at 146.053 kb on - strand at 146.053 kb on - strand at 146.170 kb on - strand at 146.170 kb on - strand at 146.170 kb on - strand at 146.170 kb on - strand at 146.170 kb on - strand at 146.182 kb on + strand at 146.182 kb on + strand at 146.183 kb on - strand at 146.211 kb on + strand, within GFF6084 at 146.211 kb on + strand, within GFF6084 at 146.212 kb on - strand, within GFF6084 at 146.212 kb on - strand, within GFF6084 at 146.853 kb on + strand, within GFF6084 at 146.853 kb on + strand, within GFF6084 at 146.853 kb on + strand, within GFF6084 at 146.854 kb on - strand, within GFF6084 at 146.854 kb on - strand, within GFF6084 at 146.854 kb on - strand, within GFF6084 at 146.970 kb on + strand, within GFF6084 at 146.971 kb on - strand, within GFF6084 at 146.971 kb on - strand, within GFF6084 at 146.971 kb on - strand, within GFF6084 at 146.976 kb on + strand, within GFF6084 at 146.976 kb on + strand, within GFF6084 at 146.976 kb on + strand, within GFF6084 at 146.977 kb on - strand, within GFF6084 at 146.977 kb on - strand, within GFF6084 at 147.009 kb on + strand, within GFF6084
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 144,189 + -0.1 144,402 + GFF6082 0.27 -0.4 144,402 + GFF6082 0.27 +0.9 144,402 + GFF6082 0.27 +1.9 144,402 + GFF6082 0.27 -0.5 144,403 - GFF6082 0.27 -0.3 144,618 + GFF6082 0.49 -0.3 144,618 + GFF6082 0.49 +0.1 144,618 + GFF6082 0.49 +0.7 144,619 - GFF6082 0.49 -1.7 144,792 + GFF6082 0.66 -0.5 144,792 + GFF6082 0.66 +0.2 144,792 + GFF6082 0.66 -1.3 144,792 + GFF6082 0.66 -0.5 144,792 + GFF6082 0.66 -0.2 144,792 + GFF6082 0.66 -1.7 144,793 - GFF6082 0.66 +0.5 144,967 - GFF6082 0.83 -1.1 144,967 - GFF6082 0.83 -0.4 145,032 + GFF6082 0.89 -0.5 145,032 + GFF6082 0.89 +0.5 145,033 - GFF6082 0.89 -0.4 145,033 - GFF6082 0.89 -1.1 145,137 + +0.7 145,137 + +0.1 145,138 - -0.1 145,138 - +1.9 145,310 - GFF6083 0.19 -0.1 145,310 - GFF6083 0.19 -0.3 145,310 - GFF6083 0.19 -0.5 145,546 + GFF6083 0.43 -0.9 146,053 - +0.1 146,053 - -0.6 146,170 - -0.0 146,170 - +0.8 146,170 - +0.3 146,170 - -0.1 146,170 - -0.3 146,182 + -0.8 146,182 + -0.0 146,183 - +1.5 146,211 + GFF6084 0.10 +1.3 146,211 + GFF6084 0.10 +0.7 146,212 - GFF6084 0.10 -0.4 146,212 - GFF6084 0.10 +1.0 146,853 + GFF6084 0.72 -0.5 146,853 + GFF6084 0.72 -0.7 146,853 + GFF6084 0.72 -1.3 146,854 - GFF6084 0.72 -0.9 146,854 - GFF6084 0.72 -0.3 146,854 - GFF6084 0.72 -0.2 146,970 + GFF6084 0.83 +0.2 146,971 - GFF6084 0.83 -0.5 146,971 - GFF6084 0.83 -0.1 146,971 - GFF6084 0.83 +2.5 146,976 + GFF6084 0.84 -0.7 146,976 + GFF6084 0.84 +0.2 146,976 + GFF6084 0.84 +0.9 146,977 - GFF6084 0.84 -0.3 146,977 - GFF6084 0.84 -0.5 147,009 + GFF6084 0.87 -1.0
Or see this region's nucleotide sequence