Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF600 and GFF601 are separated by 22 nucleotides GFF601 and GFF602 are separated by 108 nucleotides GFF602 and GFF603 are separated by 77 nucleotides
GFF600 - Metal-dependent phosphohydrolase, HD subdomain, at 645,495 to 646,085
GFF600
GFF601 - Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases, at 646,108 to 646,875
GFF601
GFF602 - Transcriptional regulator, LysR family => TcuR, at 646,984 to 647,910
GFF602
GFF603 - Tricarballylate dehydrogenase, TcuA, at 647,988 to 649,415
GFF603
Position (kb) 646
647
648 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 646.050 kb on + strand at 646.050 kb on + strand at 646.050 kb on + strand at 646.050 kb on + strand at 646.050 kb on + strand at 646.050 kb on + strand at 646.050 kb on + strand at 646.050 kb on + strand at 646.051 kb on - strand at 646.051 kb on - strand at 646.051 kb on - strand at 646.051 kb on - strand at 646.207 kb on + strand, within GFF601 at 646.207 kb on + strand, within GFF601 at 646.207 kb on + strand, within GFF601 at 646.208 kb on - strand, within GFF601 at 646.208 kb on - strand, within GFF601 at 646.537 kb on + strand, within GFF601 at 646.537 kb on + strand, within GFF601 at 646.547 kb on - strand, within GFF601 at 646.681 kb on + strand, within GFF601 at 646.681 kb on + strand, within GFF601 at 646.681 kb on + strand, within GFF601 at 646.681 kb on + strand, within GFF601 at 646.681 kb on + strand, within GFF601 at 646.681 kb on + strand, within GFF601 at 646.681 kb on + strand, within GFF601 at 646.681 kb on + strand, within GFF601 at 646.681 kb on + strand, within GFF601 at 646.681 kb on + strand, within GFF601 at 646.681 kb on + strand, within GFF601 at 646.681 kb on + strand, within GFF601 at 646.682 kb on - strand, within GFF601 at 646.682 kb on - strand, within GFF601 at 646.682 kb on - strand, within GFF601 at 646.682 kb on - strand, within GFF601 at 646.682 kb on - strand, within GFF601 at 646.682 kb on - strand, within GFF601 at 646.682 kb on - strand, within GFF601 at 646.682 kb on - strand, within GFF601 at 646.864 kb on + strand at 646.864 kb on + strand at 646.864 kb on + strand at 646.864 kb on + strand at 646.864 kb on + strand at 646.864 kb on + strand at 646.865 kb on - strand at 646.865 kb on - strand at 646.873 kb on + strand at 646.873 kb on + strand at 646.873 kb on + strand at 646.873 kb on + strand at 646.873 kb on + strand at 646.873 kb on + strand at 646.873 kb on + strand at 646.873 kb on + strand at 646.873 kb on + strand at 646.873 kb on + strand at 646.873 kb on + strand at 646.874 kb on - strand at 646.874 kb on - strand at 646.874 kb on - strand at 647.005 kb on + strand at 647.005 kb on + strand at 647.006 kb on - strand at 647.006 kb on - strand at 647.154 kb on + strand, within GFF602 at 647.336 kb on + strand, within GFF602 at 647.336 kb on + strand, within GFF602 at 647.336 kb on + strand, within GFF602 at 647.336 kb on + strand, within GFF602 at 647.956 kb on + strand at 647.956 kb on + strand at 647.957 kb on - strand at 647.992 kb on + strand at 647.992 kb on + strand at 647.993 kb on - strand at 647.993 kb on - strand at 647.993 kb on - strand at 647.993 kb on - strand at 647.993 kb on - strand at 647.993 kb on - strand at 647.993 kb on - strand at 647.993 kb on - strand at 647.998 kb on + strand at 647.998 kb on + strand at 647.998 kb on + strand at 647.998 kb on + strand at 647.998 kb on + strand at 647.999 kb on - strand at 647.999 kb on - strand at 647.999 kb on - strand at 647.999 kb on - strand at 647.999 kb on - strand at 647.999 kb on - strand at 648.174 kb on + strand, within GFF603 at 648.174 kb on + strand, within GFF603 at 648.189 kb on + strand, within GFF603 at 648.189 kb on + strand, within GFF603 at 648.190 kb on - strand, within GFF603 at 648.190 kb on - strand, within GFF603 at 648.190 kb on - strand, within GFF603 at 648.387 kb on + strand, within GFF603 at 648.387 kb on + strand, within GFF603 at 648.387 kb on + strand, within GFF603 at 648.387 kb on + strand, within GFF603 at 648.388 kb on - strand, within GFF603 at 648.388 kb on - strand, within GFF603 at 648.388 kb on - strand, within GFF603 at 648.390 kb on + strand, within GFF603 at 648.416 kb on - strand, within GFF603 at 648.426 kb on + strand, within GFF603 at 648.439 kb on + strand, within GFF603 at 648.736 kb on - strand, within GFF603 at 648.736 kb on - strand, within GFF603 at 648.810 kb on + strand, within GFF603 at 648.811 kb on - strand, within GFF603 at 648.843 kb on + strand, within GFF603 at 648.843 kb on + strand, within GFF603 at 648.844 kb on - strand, within GFF603 at 648.844 kb on - strand, within GFF603
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 646,050 + -0.5 646,050 + +0.2 646,050 + -1.2 646,050 + -0.2 646,050 + -0.5 646,050 + -0.1 646,050 + -1.4 646,050 + +0.5 646,051 - -0.5 646,051 - -1.2 646,051 - -1.2 646,051 - +1.1 646,207 + GFF601 0.13 -0.7 646,207 + GFF601 0.13 +1.0 646,207 + GFF601 0.13 -1.8 646,208 - GFF601 0.13 +0.4 646,208 - GFF601 0.13 -0.2 646,537 + GFF601 0.56 -0.4 646,537 + GFF601 0.56 +0.7 646,547 - GFF601 0.57 +0.2 646,681 + GFF601 0.75 +0.9 646,681 + GFF601 0.75 -0.4 646,681 + GFF601 0.75 -0.4 646,681 + GFF601 0.75 +0.3 646,681 + GFF601 0.75 +0.4 646,681 + GFF601 0.75 +0.5 646,681 + GFF601 0.75 -1.1 646,681 + GFF601 0.75 +0.2 646,681 + GFF601 0.75 +0.1 646,681 + GFF601 0.75 -0.0 646,681 + GFF601 0.75 +0.3 646,681 + GFF601 0.75 -0.9 646,682 - GFF601 0.75 +0.0 646,682 - GFF601 0.75 -0.7 646,682 - GFF601 0.75 -0.2 646,682 - GFF601 0.75 -1.9 646,682 - GFF601 0.75 -0.2 646,682 - GFF601 0.75 +0.8 646,682 - GFF601 0.75 +0.3 646,682 - GFF601 0.75 +0.0 646,864 + +0.2 646,864 + +0.3 646,864 + +0.0 646,864 + +1.2 646,864 + -1.0 646,864 + +1.8 646,865 - +0.4 646,865 - -0.8 646,873 + -0.2 646,873 + -0.1 646,873 + +0.1 646,873 + -0.6 646,873 + -0.2 646,873 + +0.2 646,873 + +0.5 646,873 + -0.2 646,873 + -0.0 646,873 + -0.2 646,873 + +1.8 646,874 - +0.0 646,874 - -0.2 646,874 - -0.2 647,005 + -1.9 647,005 + -0.5 647,006 - +0.1 647,006 - +0.4 647,154 + GFF602 0.18 -1.0 647,336 + GFF602 0.38 -0.5 647,336 + GFF602 0.38 -2.0 647,336 + GFF602 0.38 -0.8 647,336 + GFF602 0.38 -0.8 647,956 + -0.6 647,956 + -1.3 647,957 - +0.1 647,992 + +0.4 647,992 + +0.1 647,993 - -0.2 647,993 - -0.3 647,993 - +0.0 647,993 - +0.2 647,993 - -1.9 647,993 - +0.8 647,993 - +0.2 647,993 - -2.8 647,998 + +0.2 647,998 + -0.3 647,998 + +1.4 647,998 + -1.2 647,998 + +0.4 647,999 - -0.1 647,999 - +0.7 647,999 - +0.3 647,999 - -0.4 647,999 - +0.8 647,999 - +1.0 648,174 + GFF603 0.13 -0.4 648,174 + GFF603 0.13 +0.3 648,189 + GFF603 0.14 -0.1 648,189 + GFF603 0.14 +0.2 648,190 - GFF603 0.14 +0.3 648,190 - GFF603 0.14 -0.2 648,190 - GFF603 0.14 -0.5 648,387 + GFF603 0.28 -0.2 648,387 + GFF603 0.28 +0.5 648,387 + GFF603 0.28 -0.9 648,387 + GFF603 0.28 +0.8 648,388 - GFF603 0.28 +0.3 648,388 - GFF603 0.28 +0.1 648,388 - GFF603 0.28 -0.2 648,390 + GFF603 0.28 -0.3 648,416 - GFF603 0.30 -0.6 648,426 + GFF603 0.31 -1.1 648,439 + GFF603 0.32 +0.3 648,736 - GFF603 0.52 +1.8 648,736 - GFF603 0.52 +0.3 648,810 + GFF603 0.58 -0.2 648,811 - GFF603 0.58 -0.4 648,843 + GFF603 0.60 +0.1 648,843 + GFF603 0.60 -0.0 648,844 - GFF603 0.60 -0.2 648,844 - GFF603 0.60 -0.2
Or see this region's nucleotide sequence