Strain Fitness in Variovorax sp. SCN45 around GFF5992

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5991 and GFF5992 overlap by 13 nucleotidesGFF5992 and GFF5993 are separated by 32 nucleotides GFF5991 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 47,448 to 48,932 GFF5991 GFF5992 - BUG/TctC family periplasmic protein, at 48,920 to 49,894 GFF5992 GFF5993 - putative membrane protein, at 49,927 to 51,273 GFF5993 Position (kb) 48 49 50Strain fitness (log2 ratio) -2 -1 0 1 2at 47.931 kb on + strand, within GFF5991at 47.931 kb on + strand, within GFF5991at 47.931 kb on + strand, within GFF5991at 48.588 kb on + strand, within GFF5991at 48.705 kb on + strand, within GFF5991at 48.705 kb on + strand, within GFF5991at 48.705 kb on + strand, within GFF5991at 48.705 kb on + strand, within GFF5991at 48.705 kb on + strand, within GFF5991at 48.705 kb on + strand, within GFF5991at 48.706 kb on - strand, within GFF5991at 48.706 kb on - strand, within GFF5991at 48.706 kb on - strand, within GFF5991at 48.741 kb on + strand, within GFF5991at 48.780 kb on + strand, within GFF5991at 48.781 kb on - strand, within GFF5991at 48.781 kb on - strand, within GFF5991at 48.843 kb on + strandat 48.844 kb on - strandat 48.844 kb on - strandat 48.844 kb on - strandat 48.851 kb on - strandat 48.851 kb on - strandat 49.137 kb on + strand, within GFF5992at 49.137 kb on + strand, within GFF5992at 49.138 kb on - strand, within GFF5992at 49.357 kb on - strand, within GFF5992at 49.357 kb on - strand, within GFF5992at 49.396 kb on - strand, within GFF5992at 49.491 kb on + strand, within GFF5992at 49.491 kb on + strand, within GFF5992at 49.491 kb on + strand, within GFF5992at 49.491 kb on + strand, within GFF5992at 49.492 kb on - strand, within GFF5992at 49.492 kb on - strand, within GFF5992at 49.492 kb on - strand, within GFF5992at 49.492 kb on - strand, within GFF5992at 49.558 kb on - strand, within GFF5992at 49.819 kb on - strandat 49.908 kb on + strandat 50.132 kb on + strand, within GFF5993at 50.132 kb on + strand, within GFF5993at 50.132 kb on + strand, within GFF5993at 50.132 kb on + strand, within GFF5993at 50.132 kb on + strand, within GFF5993at 50.133 kb on - strand, within GFF5993at 50.133 kb on - strand, within GFF5993at 50.133 kb on - strand, within GFF5993at 50.133 kb on - strand, within GFF5993at 50.687 kb on + strand, within GFF5993at 50.688 kb on - strand, within GFF5993at 50.688 kb on - strand, within GFF5993at 50.688 kb on - strand, within GFF5993at 50.688 kb on - strand, within GFF5993at 50.688 kb on - strand, within GFF5993at 50.693 kb on + strand, within GFF5993at 50.693 kb on + strand, within GFF5993at 50.693 kb on + strand, within GFF5993at 50.724 kb on - strand, within GFF5993at 50.805 kb on - strand, within GFF5993at 50.805 kb on - strand, within GFF5993at 50.840 kb on + strand, within GFF5993at 50.840 kb on + strand, within GFF5993

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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47,931 + GFF5991 0.33 +0.6
47,931 + GFF5991 0.33 -0.0
47,931 + GFF5991 0.33 +0.2
48,588 + GFF5991 0.77 +0.3
48,705 + GFF5991 0.85 -0.5
48,705 + GFF5991 0.85 +0.1
48,705 + GFF5991 0.85 -0.1
48,705 + GFF5991 0.85 -1.6
48,705 + GFF5991 0.85 -0.0
48,705 + GFF5991 0.85 -1.2
48,706 - GFF5991 0.85 +0.2
48,706 - GFF5991 0.85 -0.3
48,706 - GFF5991 0.85 -0.4
48,741 + GFF5991 0.87 +0.2
48,780 + GFF5991 0.90 -0.1
48,781 - GFF5991 0.90 +0.1
48,781 - GFF5991 0.90 +0.3
48,843 + +0.5
48,844 - +1.0
48,844 - -0.9
48,844 - -0.2
48,851 - -0.3
48,851 - -0.9
49,137 + GFF5992 0.22 -0.2
49,137 + GFF5992 0.22 -2.5
49,138 - GFF5992 0.22 -0.8
49,357 - GFF5992 0.45 +0.1
49,357 - GFF5992 0.45 -0.3
49,396 - GFF5992 0.49 +0.9
49,491 + GFF5992 0.59 +0.1
49,491 + GFF5992 0.59 +0.4
49,491 + GFF5992 0.59 -0.6
49,491 + GFF5992 0.59 -0.9
49,492 - GFF5992 0.59 -0.2
49,492 - GFF5992 0.59 +1.1
49,492 - GFF5992 0.59 -0.7
49,492 - GFF5992 0.59 -0.3
49,558 - GFF5992 0.65 -1.5
49,819 - +1.9
49,908 + -1.1
50,132 + GFF5993 0.15 +0.1
50,132 + GFF5993 0.15 -0.4
50,132 + GFF5993 0.15 -1.3
50,132 + GFF5993 0.15 -0.2
50,132 + GFF5993 0.15 -0.1
50,133 - GFF5993 0.15 -0.5
50,133 - GFF5993 0.15 +0.7
50,133 - GFF5993 0.15 -0.7
50,133 - GFF5993 0.15 +0.0
50,687 + GFF5993 0.56 +0.4
50,688 - GFF5993 0.56 -0.9
50,688 - GFF5993 0.56 +1.9
50,688 - GFF5993 0.56 -0.6
50,688 - GFF5993 0.56 -0.7
50,688 - GFF5993 0.56 -0.5
50,693 + GFF5993 0.57 -1.5
50,693 + GFF5993 0.57 -0.2
50,693 + GFF5993 0.57 -0.6
50,724 - GFF5993 0.59 +0.1
50,805 - GFF5993 0.65 -0.5
50,805 - GFF5993 0.65 -0.3
50,840 + GFF5993 0.68 +0.4
50,840 + GFF5993 0.68 +0.6

Or see this region's nucleotide sequence