Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5950 and GFF5951 are separated by 1 nucleotides GFF5951 and GFF5952 are separated by 60 nucleotides GFF5952 and GFF5953 are separated by 141 nucleotides
GFF5950 - no description, at 7,204 to 7,797
GFF5950
GFF5951 - no description, at 7,799 to 8,236
GFF5951
GFF5952 - no description, at 8,297 to 8,665
GFF5952
GFF5953 - Class D beta-lactamase (EC 3.5.2.6), at 8,807 to 9,673
GFF5953
Position (kb) 8
9 Strain fitness (log2 ratio) -1
0
1
2 at 7.358 kb on - strand, within GFF5950 at 7.456 kb on + strand, within GFF5950 at 7.456 kb on + strand, within GFF5950 at 7.456 kb on + strand, within GFF5950 at 7.456 kb on + strand, within GFF5950 at 7.457 kb on - strand, within GFF5950 at 7.457 kb on - strand, within GFF5950 at 7.457 kb on - strand, within GFF5950 at 7.528 kb on + strand, within GFF5950 at 7.528 kb on + strand, within GFF5950 at 7.529 kb on - strand, within GFF5950 at 7.529 kb on - strand, within GFF5950 at 7.612 kb on + strand, within GFF5950 at 7.612 kb on + strand, within GFF5950 at 7.613 kb on - strand, within GFF5950 at 7.718 kb on - strand, within GFF5950 at 7.718 kb on - strand, within GFF5950 at 7.730 kb on - strand, within GFF5950 at 7.735 kb on + strand, within GFF5950 at 7.735 kb on + strand, within GFF5950 at 7.736 kb on - strand, within GFF5950 at 7.736 kb on - strand, within GFF5950 at 7.736 kb on - strand, within GFF5950 at 7.736 kb on - strand, within GFF5950 at 7.741 kb on + strand at 7.741 kb on + strand at 7.741 kb on + strand at 7.742 kb on - strand at 7.762 kb on + strand at 7.762 kb on + strand at 7.763 kb on - strand at 7.976 kb on + strand, within GFF5951 at 7.976 kb on + strand, within GFF5951 at 7.985 kb on + strand, within GFF5951 at 7.986 kb on - strand, within GFF5951 at 7.986 kb on - strand, within GFF5951 at 8.066 kb on + strand, within GFF5951 at 8.066 kb on + strand, within GFF5951 at 8.067 kb on - strand, within GFF5951 at 8.067 kb on - strand, within GFF5951 at 8.115 kb on - strand, within GFF5951 at 8.144 kb on + strand, within GFF5951 at 8.144 kb on + strand, within GFF5951 at 8.144 kb on + strand, within GFF5951 at 8.144 kb on + strand, within GFF5951 at 8.145 kb on - strand, within GFF5951 at 8.157 kb on - strand, within GFF5951 at 8.157 kb on - strand, within GFF5951 at 8.184 kb on - strand, within GFF5951 at 8.184 kb on - strand, within GFF5951 at 8.184 kb on - strand, within GFF5951 at 8.184 kb on - strand, within GFF5951 at 8.184 kb on - strand, within GFF5951 at 8.184 kb on - strand, within GFF5951 at 8.372 kb on + strand, within GFF5952 at 9.074 kb on + strand, within GFF5953 at 9.227 kb on + strand, within GFF5953 at 9.228 kb on - strand, within GFF5953 at 9.290 kb on + strand, within GFF5953 at 9.494 kb on + strand, within GFF5953 at 9.494 kb on + strand, within GFF5953 at 9.494 kb on + strand, within GFF5953 at 9.497 kb on + strand, within GFF5953 at 9.497 kb on + strand, within GFF5953 at 9.497 kb on + strand, within GFF5953 at 9.497 kb on + strand, within GFF5953 at 9.497 kb on + strand, within GFF5953 at 9.498 kb on - strand, within GFF5953
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 7,358 - GFF5950 0.26 -0.1 7,456 + GFF5950 0.42 +0.0 7,456 + GFF5950 0.42 +0.1 7,456 + GFF5950 0.42 -0.6 7,456 + GFF5950 0.42 +0.5 7,457 - GFF5950 0.43 +0.3 7,457 - GFF5950 0.43 +2.4 7,457 - GFF5950 0.43 -0.9 7,528 + GFF5950 0.55 +0.9 7,528 + GFF5950 0.55 -0.1 7,529 - GFF5950 0.55 -0.8 7,529 - GFF5950 0.55 +2.2 7,612 + GFF5950 0.69 +0.0 7,612 + GFF5950 0.69 -0.4 7,613 - GFF5950 0.69 -1.2 7,718 - GFF5950 0.87 -0.7 7,718 - GFF5950 0.87 -0.9 7,730 - GFF5950 0.89 +0.4 7,735 + GFF5950 0.89 -0.3 7,735 + GFF5950 0.89 -0.3 7,736 - GFF5950 0.90 +1.2 7,736 - GFF5950 0.90 -1.1 7,736 - GFF5950 0.90 +0.5 7,736 - GFF5950 0.90 +0.5 7,741 + -0.8 7,741 + -0.5 7,741 + -0.2 7,742 - -0.6 7,762 + -0.7 7,762 + -0.4 7,763 - +1.3 7,976 + GFF5951 0.40 -0.3 7,976 + GFF5951 0.40 +0.5 7,985 + GFF5951 0.42 -0.2 7,986 - GFF5951 0.43 +0.1 7,986 - GFF5951 0.43 +0.7 8,066 + GFF5951 0.61 +1.1 8,066 + GFF5951 0.61 +0.7 8,067 - GFF5951 0.61 +0.6 8,067 - GFF5951 0.61 +0.2 8,115 - GFF5951 0.72 -0.5 8,144 + GFF5951 0.79 -0.6 8,144 + GFF5951 0.79 -0.1 8,144 + GFF5951 0.79 -1.3 8,144 + GFF5951 0.79 -0.5 8,145 - GFF5951 0.79 +0.3 8,157 - GFF5951 0.82 -0.4 8,157 - GFF5951 0.82 +0.5 8,184 - GFF5951 0.88 +0.1 8,184 - GFF5951 0.88 -0.9 8,184 - GFF5951 0.88 -0.1 8,184 - GFF5951 0.88 -0.2 8,184 - GFF5951 0.88 +0.8 8,184 - GFF5951 0.88 +0.0 8,372 + GFF5952 0.20 -0.9 9,074 + GFF5953 0.31 +0.9 9,227 + GFF5953 0.48 -1.5 9,228 - GFF5953 0.49 -1.1 9,290 + GFF5953 0.56 +0.4 9,494 + GFF5953 0.79 -0.2 9,494 + GFF5953 0.79 -0.9 9,494 + GFF5953 0.79 -0.7 9,497 + GFF5953 0.80 -0.9 9,497 + GFF5953 0.80 +2.2 9,497 + GFF5953 0.80 +0.6 9,497 + GFF5953 0.80 -0.0 9,497 + GFF5953 0.80 +0.9 9,498 - GFF5953 0.80 +0.3
Or see this region's nucleotide sequence