Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF588 and GFF589 are separated by 70 nucleotides GFF589 and GFF590 are separated by 162 nucleotides GFF590 and GFF591 are separated by 119 nucleotides
GFF588 - putative membrane protein, at 635,203 to 635,622
GFF588
GFF589 - Pirin, at 635,693 to 636,394
GFF589
GFF590 - Transcriptional regulator, LysR family, at 636,557 to 637,501
GFF590
GFF591 - Renalase (EC 1.6.3.5), oxidases 1,2-dihydro- and 1,6-dihydro- beta-NAD(P)H isomers back to NAD(P), at 637,621 to 638,721
GFF591
Position (kb) 636
637
638 Strain fitness (log2 ratio) -2
-1
0
1
2 at 635.656 kb on - strand at 635.835 kb on + strand, within GFF589 at 635.835 kb on + strand, within GFF589 at 635.835 kb on + strand, within GFF589 at 635.835 kb on + strand, within GFF589 at 635.835 kb on + strand, within GFF589 at 635.835 kb on + strand, within GFF589 at 635.835 kb on + strand, within GFF589 at 635.835 kb on + strand, within GFF589 at 635.835 kb on + strand, within GFF589 at 635.835 kb on + strand, within GFF589 at 635.836 kb on - strand, within GFF589 at 635.836 kb on - strand, within GFF589 at 635.836 kb on - strand, within GFF589 at 635.836 kb on - strand, within GFF589 at 635.836 kb on - strand, within GFF589 at 635.898 kb on + strand, within GFF589 at 635.899 kb on - strand, within GFF589 at 635.899 kb on - strand, within GFF589 at 635.899 kb on - strand, within GFF589 at 636.007 kb on - strand, within GFF589 at 636.195 kb on + strand, within GFF589 at 636.195 kb on + strand, within GFF589 at 636.195 kb on + strand, within GFF589 at 636.195 kb on + strand, within GFF589 at 636.195 kb on + strand, within GFF589 at 636.196 kb on - strand, within GFF589 at 636.196 kb on - strand, within GFF589 at 636.196 kb on - strand, within GFF589 at 636.196 kb on - strand, within GFF589 at 636.196 kb on - strand, within GFF589 at 636.196 kb on - strand, within GFF589 at 636.306 kb on + strand, within GFF589 at 636.306 kb on + strand, within GFF589 at 636.306 kb on + strand, within GFF589 at 636.307 kb on - strand, within GFF589 at 636.307 kb on - strand, within GFF589 at 636.307 kb on - strand, within GFF589 at 636.307 kb on - strand, within GFF589 at 636.309 kb on + strand, within GFF589 at 636.309 kb on + strand, within GFF589 at 636.309 kb on + strand, within GFF589 at 636.310 kb on - strand, within GFF589 at 636.310 kb on - strand, within GFF589 at 636.310 kb on - strand, within GFF589 at 636.310 kb on - strand, within GFF589 at 636.310 kb on - strand, within GFF589 at 636.310 kb on - strand, within GFF589 at 636.310 kb on - strand, within GFF589 at 636.310 kb on - strand, within GFF589 at 636.310 kb on - strand, within GFF589 at 636.361 kb on - strand at 636.379 kb on + strand at 636.379 kb on + strand at 636.379 kb on + strand at 636.446 kb on + strand at 636.446 kb on + strand at 636.447 kb on - strand at 636.447 kb on - strand at 636.473 kb on + strand at 636.473 kb on + strand at 636.473 kb on + strand at 636.473 kb on + strand at 636.474 kb on - strand at 636.474 kb on - strand at 636.474 kb on - strand at 636.474 kb on - strand at 636.474 kb on - strand at 636.474 kb on - strand at 636.474 kb on - strand at 636.483 kb on + strand at 636.483 kb on + strand at 636.483 kb on + strand at 636.484 kb on - strand at 636.576 kb on + strand at 636.576 kb on + strand at 636.576 kb on + strand at 636.576 kb on + strand at 636.576 kb on + strand at 636.576 kb on + strand at 636.576 kb on + strand at 636.576 kb on + strand at 636.576 kb on + strand at 636.576 kb on + strand at 636.576 kb on + strand at 636.576 kb on + strand at 636.576 kb on + strand at 636.576 kb on + strand at 636.576 kb on + strand at 636.576 kb on + strand at 636.577 kb on - strand at 636.577 kb on - strand at 636.577 kb on - strand at 636.577 kb on - strand at 636.577 kb on - strand at 636.577 kb on - strand at 636.577 kb on - strand at 636.678 kb on - strand, within GFF590 at 637.094 kb on + strand, within GFF590 at 637.095 kb on - strand, within GFF590 at 637.095 kb on - strand, within GFF590 at 637.328 kb on + strand, within GFF590 at 637.328 kb on + strand, within GFF590 at 637.328 kb on + strand, within GFF590 at 637.329 kb on - strand, within GFF590 at 637.329 kb on - strand, within GFF590 at 637.329 kb on - strand, within GFF590 at 637.530 kb on + strand at 637.567 kb on - strand at 637.570 kb on + strand at 637.570 kb on + strand at 637.570 kb on + strand at 637.570 kb on + strand at 637.570 kb on + strand at 637.570 kb on + strand at 637.570 kb on + strand at 637.570 kb on + strand at 637.570 kb on + strand at 637.570 kb on + strand at 637.571 kb on - strand at 637.571 kb on - strand at 637.571 kb on - strand at 637.571 kb on - strand at 637.571 kb on - strand at 637.571 kb on - strand at 637.571 kb on - strand at 637.702 kb on + strand at 637.702 kb on + strand at 637.702 kb on + strand at 637.702 kb on + strand at 637.702 kb on + strand at 637.702 kb on + strand at 637.703 kb on - strand at 637.703 kb on - strand at 637.703 kb on - strand at 637.703 kb on - strand at 637.858 kb on + strand, within GFF591 at 637.858 kb on + strand, within GFF591 at 637.859 kb on - strand, within GFF591 at 638.164 kb on + strand, within GFF591 at 638.164 kb on + strand, within GFF591 at 638.165 kb on - strand, within GFF591 at 638.165 kb on - strand, within GFF591 at 638.165 kb on - strand, within GFF591 at 638.305 kb on + strand, within GFF591
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 635,656 - -0.1 635,835 + GFF589 0.20 +2.2 635,835 + GFF589 0.20 -0.9 635,835 + GFF589 0.20 -0.0 635,835 + GFF589 0.20 +0.0 635,835 + GFF589 0.20 -0.6 635,835 + GFF589 0.20 +0.9 635,835 + GFF589 0.20 +0.9 635,835 + GFF589 0.20 -1.0 635,835 + GFF589 0.20 -0.1 635,835 + GFF589 0.20 +0.3 635,836 - GFF589 0.20 -0.8 635,836 - GFF589 0.20 -0.2 635,836 - GFF589 0.20 -0.3 635,836 - GFF589 0.20 -1.0 635,836 - GFF589 0.20 +0.8 635,898 + GFF589 0.29 -0.2 635,899 - GFF589 0.29 +0.6 635,899 - GFF589 0.29 -0.5 635,899 - GFF589 0.29 -0.0 636,007 - GFF589 0.45 +0.5 636,195 + GFF589 0.72 -0.5 636,195 + GFF589 0.72 +0.0 636,195 + GFF589 0.72 +0.5 636,195 + GFF589 0.72 -0.1 636,195 + GFF589 0.72 +0.8 636,196 - GFF589 0.72 -1.2 636,196 - GFF589 0.72 +0.1 636,196 - GFF589 0.72 +0.7 636,196 - GFF589 0.72 -0.6 636,196 - GFF589 0.72 -0.5 636,196 - GFF589 0.72 -1.2 636,306 + GFF589 0.87 -0.8 636,306 + GFF589 0.87 -1.1 636,306 + GFF589 0.87 +0.8 636,307 - GFF589 0.87 -0.5 636,307 - GFF589 0.87 -0.7 636,307 - GFF589 0.87 -1.5 636,307 - GFF589 0.87 +0.8 636,309 + GFF589 0.88 +0.5 636,309 + GFF589 0.88 -0.8 636,309 + GFF589 0.88 +0.9 636,310 - GFF589 0.88 +0.8 636,310 - GFF589 0.88 +0.5 636,310 - GFF589 0.88 -0.1 636,310 - GFF589 0.88 +1.8 636,310 - GFF589 0.88 -0.6 636,310 - GFF589 0.88 -1.3 636,310 - GFF589 0.88 +0.2 636,310 - GFF589 0.88 +0.4 636,310 - GFF589 0.88 +1.2 636,361 - +1.0 636,379 + -1.0 636,379 + +0.3 636,379 + +0.2 636,446 + +0.2 636,446 + -0.6 636,447 - -0.2 636,447 - -0.6 636,473 + -0.6 636,473 + -1.5 636,473 + +0.8 636,473 + -0.1 636,474 - -1.5 636,474 - -1.4 636,474 - -0.5 636,474 - -1.0 636,474 - -0.3 636,474 - +0.6 636,474 - -1.4 636,483 + +0.1 636,483 + -1.7 636,483 + -0.3 636,484 - +0.3 636,576 + -1.4 636,576 + -0.1 636,576 + +0.5 636,576 + +0.2 636,576 + -0.5 636,576 + +0.6 636,576 + -1.6 636,576 + +0.2 636,576 + +0.8 636,576 + -0.6 636,576 + +1.8 636,576 + +0.1 636,576 + +0.4 636,576 + -0.8 636,576 + -0.8 636,576 + -0.2 636,577 - -1.0 636,577 - +0.5 636,577 - -0.5 636,577 - +0.2 636,577 - -0.2 636,577 - -0.3 636,577 - -0.3 636,678 - GFF590 0.13 +0.8 637,094 + GFF590 0.57 -0.7 637,095 - GFF590 0.57 +0.0 637,095 - GFF590 0.57 -0.6 637,328 + GFF590 0.82 -1.4 637,328 + GFF590 0.82 -0.5 637,328 + GFF590 0.82 -0.8 637,329 - GFF590 0.82 -1.0 637,329 - GFF590 0.82 -0.2 637,329 - GFF590 0.82 +0.5 637,530 + -0.6 637,567 - -0.6 637,570 + +1.1 637,570 + -1.0 637,570 + -1.6 637,570 + +0.8 637,570 + +0.2 637,570 + -0.8 637,570 + -0.0 637,570 + -0.6 637,570 + -1.5 637,570 + -0.6 637,571 - -0.2 637,571 - -1.1 637,571 - -0.3 637,571 - -0.8 637,571 - -0.4 637,571 - -0.4 637,571 - -1.1 637,702 + -0.3 637,702 + +0.0 637,702 + +0.6 637,702 + -0.8 637,702 + -0.3 637,702 + +0.4 637,703 - -0.5 637,703 - +0.0 637,703 - -0.8 637,703 - +1.8 637,858 + GFF591 0.22 +0.2 637,858 + GFF591 0.22 -0.5 637,859 - GFF591 0.22 -0.8 638,164 + GFF591 0.49 -0.1 638,164 + GFF591 0.49 -0.6 638,165 - GFF591 0.49 +0.2 638,165 - GFF591 0.49 +1.1 638,165 - GFF591 0.49 -2.3 638,305 + GFF591 0.62 -0.2
Or see this region's nucleotide sequence