Strain Fitness in Variovorax sp. SCN45 around GFF588

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF586 and GFF587 are separated by 32 nucleotidesGFF587 and GFF588 are separated by 85 nucleotidesGFF588 and GFF589 are separated by 70 nucleotidesGFF589 and GFF590 are separated by 162 nucleotides GFF586 - Pirin, at 633,610 to 634,533 GFF586 GFF587 - Multimeric flavodoxin WrbA, at 634,566 to 635,117 GFF587 GFF588 - putative membrane protein, at 635,203 to 635,622 GFF588 GFF589 - Pirin, at 635,693 to 636,394 GFF589 GFF590 - Transcriptional regulator, LysR family, at 636,557 to 637,501 GFF590 Position (kb) 635 636Strain fitness (log2 ratio) -2 -1 0 1 2at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.322 kb on + strand, within GFF586at 634.323 kb on - strand, within GFF586at 634.323 kb on - strand, within GFF586at 634.323 kb on - strand, within GFF586at 634.323 kb on - strand, within GFF586at 634.323 kb on - strand, within GFF586at 634.567 kb on + strandat 634.568 kb on - strandat 634.688 kb on - strand, within GFF587at 634.699 kb on + strand, within GFF587at 634.699 kb on + strand, within GFF587at 634.699 kb on + strand, within GFF587at 634.699 kb on + strand, within GFF587at 634.699 kb on + strand, within GFF587at 634.699 kb on + strand, within GFF587at 634.699 kb on + strand, within GFF587at 634.699 kb on + strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.700 kb on - strand, within GFF587at 634.795 kb on + strand, within GFF587at 634.795 kb on + strand, within GFF587at 634.795 kb on + strand, within GFF587at 634.795 kb on + strand, within GFF587at 634.795 kb on + strand, within GFF587at 634.795 kb on + strand, within GFF587at 634.795 kb on + strand, within GFF587at 634.796 kb on - strand, within GFF587at 634.796 kb on - strand, within GFF587at 634.796 kb on - strand, within GFF587at 634.796 kb on - strand, within GFF587at 634.796 kb on - strand, within GFF587at 634.879 kb on + strand, within GFF587at 634.880 kb on - strand, within GFF587at 634.880 kb on - strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.939 kb on + strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.940 kb on - strand, within GFF587at 634.953 kb on + strand, within GFF587at 634.953 kb on + strand, within GFF587at 634.953 kb on + strand, within GFF587at 634.954 kb on - strand, within GFF587at 634.954 kb on - strand, within GFF587at 634.954 kb on - strand, within GFF587at 634.954 kb on - strand, within GFF587at 635.122 kb on + strandat 635.122 kb on + strandat 635.122 kb on + strandat 635.122 kb on + strandat 635.122 kb on + strandat 635.123 kb on - strandat 635.133 kb on + strandat 635.133 kb on + strandat 635.134 kb on - strandat 635.134 kb on - strandat 635.134 kb on - strandat 635.204 kb on + strandat 635.205 kb on - strandat 635.205 kb on - strandat 635.211 kb on + strandat 635.330 kb on + strand, within GFF588at 635.330 kb on + strand, within GFF588at 635.330 kb on + strand, within GFF588at 635.330 kb on + strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.331 kb on - strand, within GFF588at 635.407 kb on + strand, within GFF588at 635.407 kb on + strand, within GFF588at 635.407 kb on + strand, within GFF588at 635.408 kb on - strand, within GFF588at 635.492 kb on + strand, within GFF588at 635.492 kb on + strand, within GFF588at 635.493 kb on - strand, within GFF588at 635.493 kb on - strand, within GFF588at 635.493 kb on - strand, within GFF588at 635.549 kb on + strand, within GFF588at 635.549 kb on + strand, within GFF588at 635.549 kb on + strand, within GFF588at 635.549 kb on + strand, within GFF588at 635.549 kb on + strand, within GFF588at 635.550 kb on - strand, within GFF588at 635.550 kb on - strand, within GFF588at 635.550 kb on - strand, within GFF588at 635.550 kb on - strand, within GFF588at 635.656 kb on - strandat 635.835 kb on + strand, within GFF589at 635.835 kb on + strand, within GFF589at 635.835 kb on + strand, within GFF589at 635.835 kb on + strand, within GFF589at 635.835 kb on + strand, within GFF589at 635.835 kb on + strand, within GFF589at 635.835 kb on + strand, within GFF589at 635.835 kb on + strand, within GFF589at 635.835 kb on + strand, within GFF589at 635.835 kb on + strand, within GFF589at 635.836 kb on - strand, within GFF589at 635.836 kb on - strand, within GFF589at 635.836 kb on - strand, within GFF589at 635.836 kb on - strand, within GFF589at 635.836 kb on - strand, within GFF589at 635.898 kb on + strand, within GFF589at 635.899 kb on - strand, within GFF589at 635.899 kb on - strand, within GFF589at 635.899 kb on - strand, within GFF589at 636.007 kb on - strand, within GFF589at 636.195 kb on + strand, within GFF589at 636.195 kb on + strand, within GFF589at 636.195 kb on + strand, within GFF589at 636.195 kb on + strand, within GFF589at 636.195 kb on + strand, within GFF589at 636.196 kb on - strand, within GFF589at 636.196 kb on - strand, within GFF589at 636.196 kb on - strand, within GFF589at 636.196 kb on - strand, within GFF589at 636.196 kb on - strand, within GFF589at 636.196 kb on - strand, within GFF589at 636.306 kb on + strand, within GFF589at 636.306 kb on + strand, within GFF589at 636.306 kb on + strand, within GFF589at 636.307 kb on - strand, within GFF589at 636.307 kb on - strand, within GFF589at 636.307 kb on - strand, within GFF589at 636.307 kb on - strand, within GFF589at 636.309 kb on + strand, within GFF589at 636.309 kb on + strand, within GFF589at 636.309 kb on + strand, within GFF589at 636.310 kb on - strand, within GFF589at 636.310 kb on - strand, within GFF589at 636.310 kb on - strand, within GFF589at 636.310 kb on - strand, within GFF589at 636.310 kb on - strand, within GFF589at 636.310 kb on - strand, within GFF589at 636.310 kb on - strand, within GFF589at 636.310 kb on - strand, within GFF589at 636.310 kb on - strand, within GFF589at 636.361 kb on - strandat 636.379 kb on + strandat 636.379 kb on + strandat 636.379 kb on + strandat 636.446 kb on + strandat 636.446 kb on + strandat 636.447 kb on - strandat 636.447 kb on - strandat 636.473 kb on + strandat 636.473 kb on + strandat 636.473 kb on + strandat 636.473 kb on + strandat 636.474 kb on - strandat 636.474 kb on - strandat 636.474 kb on - strandat 636.474 kb on - strandat 636.474 kb on - strandat 636.474 kb on - strandat 636.474 kb on - strandat 636.483 kb on + strandat 636.483 kb on + strandat 636.483 kb on + strandat 636.484 kb on - strandat 636.576 kb on + strandat 636.576 kb on + strandat 636.576 kb on + strandat 636.576 kb on + strandat 636.576 kb on + strandat 636.576 kb on + strandat 636.576 kb on + strandat 636.576 kb on + strandat 636.576 kb on + strandat 636.576 kb on + strandat 636.576 kb on + strandat 636.576 kb on + strandat 636.576 kb on + strandat 636.576 kb on + strandat 636.576 kb on + strandat 636.576 kb on + strandat 636.577 kb on - strandat 636.577 kb on - strandat 636.577 kb on - strandat 636.577 kb on - strandat 636.577 kb on - strandat 636.577 kb on - strandat 636.577 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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634,322 + GFF586 0.77 -0.5
634,322 + GFF586 0.77 -0.8
634,322 + GFF586 0.77 -2.1
634,322 + GFF586 0.77 +1.2
634,322 + GFF586 0.77 +0.1
634,322 + GFF586 0.77 -1.5
634,322 + GFF586 0.77 +0.2
634,322 + GFF586 0.77 +0.2
634,323 - GFF586 0.77 -1.6
634,323 - GFF586 0.77 +0.5
634,323 - GFF586 0.77 +1.2
634,323 - GFF586 0.77 -0.2
634,323 - GFF586 0.77 +0.4
634,567 + -2.0
634,568 - -0.1
634,688 - GFF587 0.22 -0.1
634,699 + GFF587 0.24 -0.4
634,699 + GFF587 0.24 -0.2
634,699 + GFF587 0.24 +1.4
634,699 + GFF587 0.24 +0.0
634,699 + GFF587 0.24 -0.4
634,699 + GFF587 0.24 +0.2
634,699 + GFF587 0.24 -2.0
634,699 + GFF587 0.24 +0.6
634,700 - GFF587 0.24 +0.2
634,700 - GFF587 0.24 +1.3
634,700 - GFF587 0.24 +0.0
634,700 - GFF587 0.24 +0.8
634,700 - GFF587 0.24 -0.8
634,700 - GFF587 0.24 +0.7
634,700 - GFF587 0.24 -1.3
634,700 - GFF587 0.24 +0.2
634,700 - GFF587 0.24 -0.8
634,700 - GFF587 0.24 +0.4
634,700 - GFF587 0.24 +0.0
634,795 + GFF587 0.41 -0.8
634,795 + GFF587 0.41 +0.8
634,795 + GFF587 0.41 +0.5
634,795 + GFF587 0.41 -0.5
634,795 + GFF587 0.41 +1.8
634,795 + GFF587 0.41 +0.7
634,795 + GFF587 0.41 -0.3
634,796 - GFF587 0.42 -1.2
634,796 - GFF587 0.42 +1.8
634,796 - GFF587 0.42 -0.2
634,796 - GFF587 0.42 -0.2
634,796 - GFF587 0.42 +0.4
634,879 + GFF587 0.57 +0.8
634,880 - GFF587 0.57 -0.3
634,880 - GFF587 0.57 -0.6
634,939 + GFF587 0.68 -0.6
634,939 + GFF587 0.68 +1.1
634,939 + GFF587 0.68 +0.2
634,939 + GFF587 0.68 +0.5
634,939 + GFF587 0.68 +0.2
634,939 + GFF587 0.68 +0.9
634,939 + GFF587 0.68 +0.6
634,939 + GFF587 0.68 -1.9
634,939 + GFF587 0.68 -0.6
634,939 + GFF587 0.68 -0.1
634,939 + GFF587 0.68 -1.5
634,940 - GFF587 0.68 -0.2
634,940 - GFF587 0.68 -1.0
634,940 - GFF587 0.68 -1.3
634,940 - GFF587 0.68 +0.5
634,940 - GFF587 0.68 +0.2
634,940 - GFF587 0.68 -1.3
634,940 - GFF587 0.68 -1.3
634,940 - GFF587 0.68 -0.6
634,940 - GFF587 0.68 +1.0
634,940 - GFF587 0.68 -0.3
634,940 - GFF587 0.68 +0.6
634,940 - GFF587 0.68 +0.2
634,940 - GFF587 0.68 -0.1
634,953 + GFF587 0.70 +0.2
634,953 + GFF587 0.70 +0.0
634,953 + GFF587 0.70 -0.3
634,954 - GFF587 0.70 +0.2
634,954 - GFF587 0.70 +0.1
634,954 - GFF587 0.70 -0.5
634,954 - GFF587 0.70 -0.4
635,122 + +1.6
635,122 + +0.8
635,122 + +0.4
635,122 + +1.4
635,122 + -1.1
635,123 - -0.4
635,133 + -0.3
635,133 + -0.2
635,134 - -0.2
635,134 - -0.8
635,134 - -0.1
635,204 + -1.5
635,205 - +0.4
635,205 - +0.6
635,211 + -1.6
635,330 + GFF588 0.30 +0.1
635,330 + GFF588 0.30 +0.2
635,330 + GFF588 0.30 +0.2
635,330 + GFF588 0.30 +0.2
635,331 - GFF588 0.30 -0.2
635,331 - GFF588 0.30 +0.6
635,331 - GFF588 0.30 +1.0
635,331 - GFF588 0.30 +0.5
635,331 - GFF588 0.30 +0.1
635,331 - GFF588 0.30 +1.1
635,331 - GFF588 0.30 -0.9
635,331 - GFF588 0.30 +0.6
635,331 - GFF588 0.30 +1.8
635,331 - GFF588 0.30 +0.1
635,407 + GFF588 0.49 +0.7
635,407 + GFF588 0.49 -0.1
635,407 + GFF588 0.49 +0.4
635,408 - GFF588 0.49 +0.0
635,492 + GFF588 0.69 -2.2
635,492 + GFF588 0.69 +1.4
635,493 - GFF588 0.69 +0.8
635,493 - GFF588 0.69 +1.5
635,493 - GFF588 0.69 -0.0
635,549 + GFF588 0.82 +0.1
635,549 + GFF588 0.82 -0.4
635,549 + GFF588 0.82 -0.8
635,549 + GFF588 0.82 +0.6
635,549 + GFF588 0.82 +1.1
635,550 - GFF588 0.83 +0.2
635,550 - GFF588 0.83 -0.6
635,550 - GFF588 0.83 +1.8
635,550 - GFF588 0.83 +0.3
635,656 - -0.1
635,835 + GFF589 0.20 +2.2
635,835 + GFF589 0.20 -0.9
635,835 + GFF589 0.20 -0.0
635,835 + GFF589 0.20 +0.0
635,835 + GFF589 0.20 -0.6
635,835 + GFF589 0.20 +0.9
635,835 + GFF589 0.20 +0.9
635,835 + GFF589 0.20 -1.0
635,835 + GFF589 0.20 -0.1
635,835 + GFF589 0.20 +0.3
635,836 - GFF589 0.20 -0.8
635,836 - GFF589 0.20 -0.2
635,836 - GFF589 0.20 -0.3
635,836 - GFF589 0.20 -1.0
635,836 - GFF589 0.20 +0.8
635,898 + GFF589 0.29 -0.2
635,899 - GFF589 0.29 +0.6
635,899 - GFF589 0.29 -0.5
635,899 - GFF589 0.29 -0.0
636,007 - GFF589 0.45 +0.5
636,195 + GFF589 0.72 -0.5
636,195 + GFF589 0.72 +0.0
636,195 + GFF589 0.72 +0.5
636,195 + GFF589 0.72 -0.1
636,195 + GFF589 0.72 +0.8
636,196 - GFF589 0.72 -1.2
636,196 - GFF589 0.72 +0.1
636,196 - GFF589 0.72 +0.7
636,196 - GFF589 0.72 -0.6
636,196 - GFF589 0.72 -0.5
636,196 - GFF589 0.72 -1.2
636,306 + GFF589 0.87 -0.8
636,306 + GFF589 0.87 -1.1
636,306 + GFF589 0.87 +0.8
636,307 - GFF589 0.87 -0.5
636,307 - GFF589 0.87 -0.7
636,307 - GFF589 0.87 -1.5
636,307 - GFF589 0.87 +0.8
636,309 + GFF589 0.88 +0.5
636,309 + GFF589 0.88 -0.8
636,309 + GFF589 0.88 +0.9
636,310 - GFF589 0.88 +0.8
636,310 - GFF589 0.88 +0.5
636,310 - GFF589 0.88 -0.1
636,310 - GFF589 0.88 +1.8
636,310 - GFF589 0.88 -0.6
636,310 - GFF589 0.88 -1.3
636,310 - GFF589 0.88 +0.2
636,310 - GFF589 0.88 +0.4
636,310 - GFF589 0.88 +1.2
636,361 - +1.0
636,379 + -1.0
636,379 + +0.3
636,379 + +0.2
636,446 + +0.2
636,446 + -0.6
636,447 - -0.2
636,447 - -0.6
636,473 + -0.6
636,473 + -1.5
636,473 + +0.8
636,473 + -0.1
636,474 - -1.5
636,474 - -1.4
636,474 - -0.5
636,474 - -1.0
636,474 - -0.3
636,474 - +0.6
636,474 - -1.4
636,483 + +0.1
636,483 + -1.7
636,483 + -0.3
636,484 - +0.3
636,576 + -1.4
636,576 + -0.1
636,576 + +0.5
636,576 + +0.2
636,576 + -0.5
636,576 + +0.6
636,576 + -1.6
636,576 + +0.2
636,576 + +0.8
636,576 + -0.6
636,576 + +1.8
636,576 + +0.1
636,576 + +0.4
636,576 + -0.8
636,576 + -0.8
636,576 + -0.2
636,577 - -1.0
636,577 - +0.5
636,577 - -0.5
636,577 - +0.2
636,577 - -0.2
636,577 - -0.3
636,577 - -0.3

Or see this region's nucleotide sequence