Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5874 and GFF5875 are separated by 203 nucleotides GFF5875 and GFF5876 are separated by 89 nucleotides GFF5876 and GFF5877 are separated by 56 nucleotides GFF5877 and GFF5878 are separated by 28 nucleotides
GFF5874 - hypothetical protein, at 87,854 to 88,756
GFF5874
GFF5875 - Probable nitrogen assimilation regulatory protein NtrX, at 88,960 to 89,661
GFF5875
GFF5876 - Nitrogen regulation protein NtrY (EC 2.7.3.-), at 89,751 to 92,021
GFF5876
GFF5877 - Probable proline rich signal peptide protein, at 92,078 to 92,671
GFF5877
GFF5878 - 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176), at 92,700 to 94,001
GFF5878
Position (kb) 89
90
91
92
93 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 88.765 kb on + strand at 88.765 kb on + strand at 88.766 kb on - strand at 88.786 kb on + strand at 88.787 kb on - strand at 88.787 kb on - strand at 88.787 kb on - strand at 88.964 kb on - strand at 89.687 kb on + strand at 89.687 kb on + strand at 89.688 kb on - strand at 89.688 kb on - strand at 89.688 kb on - strand at 89.688 kb on - strand at 89.703 kb on + strand at 89.703 kb on + strand at 89.703 kb on + strand at 89.703 kb on + strand at 89.703 kb on + strand at 89.703 kb on + strand at 89.703 kb on + strand at 89.703 kb on + strand at 89.703 kb on + strand at 89.703 kb on + strand at 89.703 kb on + strand at 89.703 kb on + strand at 89.704 kb on - strand at 89.704 kb on - strand at 89.704 kb on - strand at 89.704 kb on - strand at 89.704 kb on - strand at 89.704 kb on - strand at 89.704 kb on - strand at 89.704 kb on - strand at 89.704 kb on - strand at 89.704 kb on - strand at 89.704 kb on - strand at 89.704 kb on - strand at 89.704 kb on - strand at 89.744 kb on + strand at 89.744 kb on + strand at 89.745 kb on - strand at 89.745 kb on - strand at 89.745 kb on - strand at 89.844 kb on + strand at 89.844 kb on + strand at 89.844 kb on + strand at 89.844 kb on + strand at 89.845 kb on - strand at 89.845 kb on - strand at 89.845 kb on - strand at 89.845 kb on - strand at 89.933 kb on + strand at 89.956 kb on + strand at 89.956 kb on + strand at 89.956 kb on + strand at 89.956 kb on + strand at 89.956 kb on + strand at 89.957 kb on - strand at 89.957 kb on - strand at 89.957 kb on - strand at 89.957 kb on - strand at 89.957 kb on - strand at 90.053 kb on + strand, within GFF5876 at 90.054 kb on - strand, within GFF5876 at 90.229 kb on + strand, within GFF5876 at 90.229 kb on + strand, within GFF5876 at 90.229 kb on + strand, within GFF5876 at 90.229 kb on + strand, within GFF5876 at 90.230 kb on - strand, within GFF5876 at 90.974 kb on + strand, within GFF5876 at 90.975 kb on - strand, within GFF5876 at 91.156 kb on + strand, within GFF5876 at 91.156 kb on + strand, within GFF5876 at 91.156 kb on + strand, within GFF5876 at 91.156 kb on + strand, within GFF5876 at 91.156 kb on + strand, within GFF5876 at 91.156 kb on + strand, within GFF5876 at 91.156 kb on + strand, within GFF5876 at 91.156 kb on + strand, within GFF5876 at 91.157 kb on - strand, within GFF5876 at 91.157 kb on - strand, within GFF5876 at 91.157 kb on - strand, within GFF5876 at 91.157 kb on - strand, within GFF5876 at 91.157 kb on - strand, within GFF5876 at 91.157 kb on - strand, within GFF5876 at 91.157 kb on - strand, within GFF5876 at 91.157 kb on - strand, within GFF5876 at 91.157 kb on - strand, within GFF5876 at 91.157 kb on - strand, within GFF5876 at 91.199 kb on - strand, within GFF5876 at 91.199 kb on - strand, within GFF5876 at 91.273 kb on + strand, within GFF5876 at 91.274 kb on - strand, within GFF5876 at 91.274 kb on - strand, within GFF5876 at 91.726 kb on + strand, within GFF5876 at 91.726 kb on + strand, within GFF5876 at 91.726 kb on + strand, within GFF5876 at 91.727 kb on - strand, within GFF5876 at 91.738 kb on + strand, within GFF5876 at 91.738 kb on + strand, within GFF5876 at 91.738 kb on + strand, within GFF5876 at 91.738 kb on + strand, within GFF5876 at 91.738 kb on + strand, within GFF5876 at 91.738 kb on + strand, within GFF5876 at 91.738 kb on + strand, within GFF5876 at 91.738 kb on + strand, within GFF5876 at 91.738 kb on + strand, within GFF5876 at 91.738 kb on + strand, within GFF5876 at 91.738 kb on + strand, within GFF5876 at 91.739 kb on - strand, within GFF5876 at 91.739 kb on - strand, within GFF5876 at 91.739 kb on - strand, within GFF5876 at 91.739 kb on - strand, within GFF5876 at 91.739 kb on - strand, within GFF5876 at 91.739 kb on - strand, within GFF5876 at 91.739 kb on - strand, within GFF5876 at 91.739 kb on - strand, within GFF5876 at 91.912 kb on + strand at 91.912 kb on + strand at 91.912 kb on + strand at 91.912 kb on + strand at 91.912 kb on + strand at 91.912 kb on + strand at 91.912 kb on + strand at 91.913 kb on - strand at 91.913 kb on - strand at 91.913 kb on - strand at 91.913 kb on - strand at 91.913 kb on - strand at 91.913 kb on - strand at 91.915 kb on + strand at 91.915 kb on + strand at 91.915 kb on + strand at 91.915 kb on + strand at 91.915 kb on + strand at 91.915 kb on + strand at 91.915 kb on + strand at 91.916 kb on - strand at 91.916 kb on - strand at 91.924 kb on + strand at 91.924 kb on + strand at 91.924 kb on + strand at 91.925 kb on - strand at 91.925 kb on - strand at 92.125 kb on + strand at 92.125 kb on + strand at 92.125 kb on + strand at 92.125 kb on + strand at 92.126 kb on - strand at 92.126 kb on - strand at 92.391 kb on + strand, within GFF5877 at 92.392 kb on - strand, within GFF5877 at 92.392 kb on - strand, within GFF5877 at 92.481 kb on + strand, within GFF5877 at 92.481 kb on + strand, within GFF5877 at 92.482 kb on - strand, within GFF5877 at 92.482 kb on - strand, within GFF5877 at 92.482 kb on - strand, within GFF5877 at 92.482 kb on - strand, within GFF5877 at 92.482 kb on - strand, within GFF5877 at 92.482 kb on - strand, within GFF5877 at 92.482 kb on - strand, within GFF5877 at 92.553 kb on + strand, within GFF5877 at 92.553 kb on + strand, within GFF5877 at 92.553 kb on + strand, within GFF5877 at 92.554 kb on - strand, within GFF5877 at 92.728 kb on + strand at 92.728 kb on + strand at 92.728 kb on + strand at 92.729 kb on - strand at 92.729 kb on - strand at 92.841 kb on + strand, within GFF5878 at 92.841 kb on + strand, within GFF5878 at 92.841 kb on + strand, within GFF5878 at 92.841 kb on + strand, within GFF5878 at 92.841 kb on + strand, within GFF5878 at 92.841 kb on + strand, within GFF5878 at 92.842 kb on - strand, within GFF5878 at 92.842 kb on - strand, within GFF5878 at 92.842 kb on - strand, within GFF5878 at 92.842 kb on - strand, within GFF5878 at 92.899 kb on + strand, within GFF5878 at 92.899 kb on + strand, within GFF5878 at 92.899 kb on + strand, within GFF5878 at 92.899 kb on + strand, within GFF5878 at 92.900 kb on - strand, within GFF5878 at 92.900 kb on - strand, within GFF5878 at 92.900 kb on - strand, within GFF5878 at 92.900 kb on - strand, within GFF5878
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 88,765 + +1.0 88,765 + +0.6 88,766 - +0.1 88,786 + -0.0 88,787 - -0.8 88,787 - +0.5 88,787 - -0.5 88,964 - +0.3 89,687 + -0.6 89,687 + -1.1 89,688 - -2.0 89,688 - +1.0 89,688 - -0.4 89,688 - -0.5 89,703 + -0.9 89,703 + +1.7 89,703 + +0.2 89,703 + -2.0 89,703 + -0.3 89,703 + -0.3 89,703 + -0.1 89,703 + +1.0 89,703 + -1.8 89,703 + -1.2 89,703 + -0.3 89,703 + -1.0 89,704 - +0.2 89,704 - -1.1 89,704 - -0.8 89,704 - +0.1 89,704 - -2.5 89,704 - -1.1 89,704 - -0.0 89,704 - -0.8 89,704 - -1.8 89,704 - -0.0 89,704 - +0.3 89,704 - -2.0 89,704 - -0.5 89,744 + +0.5 89,744 + -0.1 89,745 - +0.4 89,745 - -0.2 89,745 - +1.3 89,844 + -2.7 89,844 + +0.4 89,844 + -1.1 89,844 + +0.1 89,845 - -1.2 89,845 - -2.4 89,845 - -2.1 89,845 - -0.8 89,933 + -0.0 89,956 + -0.0 89,956 + -0.2 89,956 + -1.3 89,956 + -2.1 89,956 + -0.8 89,957 - -1.0 89,957 - +0.7 89,957 - +1.0 89,957 - -0.8 89,957 - -2.1 90,053 + GFF5876 0.13 +1.0 90,054 - GFF5876 0.13 +1.4 90,229 + GFF5876 0.21 -1.2 90,229 + GFF5876 0.21 -0.2 90,229 + GFF5876 0.21 -0.8 90,229 + GFF5876 0.21 -2.0 90,230 - GFF5876 0.21 -1.2 90,974 + GFF5876 0.54 +2.0 90,975 - GFF5876 0.54 -1.2 91,156 + GFF5876 0.62 -2.9 91,156 + GFF5876 0.62 +2.4 91,156 + GFF5876 0.62 +0.6 91,156 + GFF5876 0.62 -1.2 91,156 + GFF5876 0.62 -1.0 91,156 + GFF5876 0.62 +0.3 91,156 + GFF5876 0.62 -0.9 91,156 + GFF5876 0.62 -0.9 91,157 - GFF5876 0.62 +1.4 91,157 - GFF5876 0.62 -0.5 91,157 - GFF5876 0.62 -0.3 91,157 - GFF5876 0.62 -1.0 91,157 - GFF5876 0.62 +0.2 91,157 - GFF5876 0.62 -0.5 91,157 - GFF5876 0.62 -0.4 91,157 - GFF5876 0.62 -1.0 91,157 - GFF5876 0.62 -1.8 91,157 - GFF5876 0.62 +0.3 91,199 - GFF5876 0.64 -0.8 91,199 - GFF5876 0.64 -0.5 91,273 + GFF5876 0.67 -0.2 91,274 - GFF5876 0.67 -0.0 91,274 - GFF5876 0.67 +0.2 91,726 + GFF5876 0.87 +1.4 91,726 + GFF5876 0.87 -0.0 91,726 + GFF5876 0.87 -0.5 91,727 - GFF5876 0.87 +0.4 91,738 + GFF5876 0.87 -1.2 91,738 + GFF5876 0.87 -1.2 91,738 + GFF5876 0.87 -1.5 91,738 + GFF5876 0.87 -0.8 91,738 + GFF5876 0.87 -0.8 91,738 + GFF5876 0.87 -0.3 91,738 + GFF5876 0.87 +1.4 91,738 + GFF5876 0.87 -1.3 91,738 + GFF5876 0.87 -1.7 91,738 + GFF5876 0.87 -1.3 91,738 + GFF5876 0.87 -0.7 91,739 - GFF5876 0.88 -1.6 91,739 - GFF5876 0.88 +0.2 91,739 - GFF5876 0.88 +1.6 91,739 - GFF5876 0.88 +0.6 91,739 - GFF5876 0.88 -1.2 91,739 - GFF5876 0.88 +0.3 91,739 - GFF5876 0.88 +0.7 91,739 - GFF5876 0.88 -2.0 91,912 + -0.0 91,912 + -0.9 91,912 + +0.7 91,912 + +1.0 91,912 + -0.5 91,912 + -1.5 91,912 + -2.6 91,913 - -0.9 91,913 - -0.3 91,913 - -1.1 91,913 - -0.7 91,913 - +0.7 91,913 - -0.3 91,915 + -0.7 91,915 + -1.5 91,915 + +0.4 91,915 + -0.3 91,915 + -0.0 91,915 + -3.3 91,915 + -0.7 91,916 - +0.3 91,916 - -0.7 91,924 + -1.6 91,924 + +0.4 91,924 + -0.5 91,925 - -0.6 91,925 - -0.9 92,125 + -0.8 92,125 + -0.7 92,125 + -1.6 92,125 + -1.2 92,126 - -0.3 92,126 - -0.3 92,391 + GFF5877 0.53 -0.2 92,392 - GFF5877 0.53 -0.0 92,392 - GFF5877 0.53 -0.3 92,481 + GFF5877 0.68 -1.6 92,481 + GFF5877 0.68 -0.1 92,482 - GFF5877 0.68 -0.3 92,482 - GFF5877 0.68 -1.5 92,482 - GFF5877 0.68 +2.0 92,482 - GFF5877 0.68 -1.5 92,482 - GFF5877 0.68 -0.5 92,482 - GFF5877 0.68 -0.8 92,482 - GFF5877 0.68 -0.0 92,553 + GFF5877 0.80 -1.8 92,553 + GFF5877 0.80 -1.5 92,553 + GFF5877 0.80 -0.2 92,554 - GFF5877 0.80 -0.9 92,728 + -2.1 92,728 + -1.3 92,728 + +0.4 92,729 - -0.7 92,729 - +0.2 92,841 + GFF5878 0.11 -0.0 92,841 + GFF5878 0.11 -0.2 92,841 + GFF5878 0.11 -0.6 92,841 + GFF5878 0.11 -0.4 92,841 + GFF5878 0.11 -0.1 92,841 + GFF5878 0.11 -1.4 92,842 - GFF5878 0.11 -0.1 92,842 - GFF5878 0.11 +1.0 92,842 - GFF5878 0.11 +0.7 92,842 - GFF5878 0.11 -1.0 92,899 + GFF5878 0.15 -0.3 92,899 + GFF5878 0.15 -1.2 92,899 + GFF5878 0.15 -0.2 92,899 + GFF5878 0.15 -1.8 92,900 - GFF5878 0.15 -0.6 92,900 - GFF5878 0.15 -0.2 92,900 - GFF5878 0.15 -0.3 92,900 - GFF5878 0.15 -0.5
Or see this region's nucleotide sequence