Strain Fitness in Variovorax sp. SCN45 around GFF5872

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
86,080	+				+0.2
86,080	+				-0.3
86,080	+				+1.4
86,081	-				+0.7
86,081	-				-0.2
86,081	-				-1.2
86,081	-				-0.6
86,081	-				+0.2
86,081	-				+0.5
86,081	-				+0.1
86,081	-				-0.3
86,081	-				+0.4
86,083	+				-1.2
86,083	+				-0.5
86,083	+				+0.3
86,084	-				-0.8
86,269	+				-0.8
86,269	+				+1.0
86,269	+				+0.9
86,270	-				-0.4
86,270	-				+0.3
86,270	-				+0.1
86,270	-				-0.5
86,270	-				-0.3
86,270	-				+0.8
86,270	-				-0.0
86,270	-				-0.1
86,562	+				-1.0
86,562	+				-1.0
86,562	+				-0.4
86,562	+				+1.3
86,563	-				+0.1
86,563	-				+0.3
86,563	-				-0.5
86,563	-				-0.4
86,580	+				-0.6
86,580	+				-0.6
86,581	-				+0.4
86,581	-				-0.2
86,581	-				+0.5
86,581	-				+0.2
86,581	-				+0.1
86,581	-				-0.4
86,613	+		GFF5872	0.12	-0.4
86,613	+		GFF5872	0.12	-0.1
86,613	+		GFF5872	0.12	-0.2
86,614	-		GFF5872	0.12	+0.7
86,614	-		GFF5872	0.12	+0.6
86,614	-		GFF5872	0.12	-0.5
86,614	-		GFF5872	0.12	+0.7
86,614	-		GFF5872	0.12	-1.0
86,614	-		GFF5872	0.12	+0.5
86,614	-		GFF5872	0.12	-0.5
86,616	+		GFF5872	0.13	-1.7
86,616	+		GFF5872	0.13	+0.1
86,616	+		GFF5872	0.13	-0.1
86,616	+		GFF5872	0.13	-0.2
86,616	+		GFF5872	0.13	-0.3
86,617	-		GFF5872	0.13	+1.4
86,617	-		GFF5872	0.13	-1.2
86,617	-		GFF5872	0.13	-0.1
86,628	+		GFF5872	0.14	-1.0
86,628	+		GFF5872	0.14	-0.4
86,688	+		GFF5872	0.20	+0.2
86,689	-		GFF5872	0.20	-1.1
86,689	-		GFF5872	0.20	+1.1
86,689	-		GFF5872	0.20	-0.8
86,689	-		GFF5872	0.20	-0.1
86,689	-		GFF5872	0.20	+1.3
86,778	+		GFF5872	0.28	+1.6
86,779	-		GFF5872	0.28	-1.1
86,805	+		GFF5872	0.31	+0.1
86,805	+		GFF5872	0.31	+1.4
86,805	+		GFF5872	0.31	+0.3
86,805	+		GFF5872	0.31	-1.3
86,805	+		GFF5872	0.31	+0.0
86,805	+		GFF5872	0.31	-0.9
86,805	+		GFF5872	0.31	+1.3
86,806	-		GFF5872	0.31	-0.9
86,806	-		GFF5872	0.31	-0.3
86,806	-		GFF5872	0.31	+0.2
86,806	-		GFF5872	0.31	+0.3
86,806	-		GFF5872	0.31	+0.3
86,943	+		GFF5872	0.44	-0.2
86,943	+		GFF5872	0.44	-0.9
86,943	+		GFF5872	0.44	-0.8
86,943	+		GFF5872	0.44	+0.1
86,943	+		GFF5872	0.44	+0.1
86,944	-		GFF5872	0.44	-1.0
86,944	-		GFF5872	0.44	-1.4
86,944	-		GFF5872	0.44	-1.2
86,944	-		GFF5872	0.44	+0.4
86,944	-		GFF5872	0.44	-0.9
86,944	-		GFF5872	0.44	-0.8
87,064	-		GFF5872	0.56	+0.3
87,138	+		GFF5872	0.63	-0.7
87,138	+		GFF5872	0.63	-1.5
87,139	-		GFF5872	0.63	-0.1
87,198	+		GFF5872	0.69	-0.4
87,198	+		GFF5872	0.69	+0.1
87,198	+		GFF5872	0.69	-0.3
87,198	+		GFF5872	0.69	-0.0
87,198	+		GFF5872	0.69	-0.0
87,198	+		GFF5872	0.69	-0.8
87,198	+		GFF5872	0.69	-0.1
87,198	+		GFF5872	0.69	-0.5
87,198	+		GFF5872	0.69	+0.0
87,198	+		GFF5872	0.69	-0.7
87,199	-		GFF5872	0.69	-0.3
87,199	-		GFF5872	0.69	+0.5
87,199	-		GFF5872	0.69	-1.3
87,199	-		GFF5872	0.69	-0.1
87,199	-		GFF5872	0.69	+2.4
87,199	-		GFF5872	0.69	+3.0
87,199	-		GFF5872	0.69	+0.5
87,199	-		GFF5872	0.69	-0.4
87,199	-		GFF5872	0.69	-0.2
87,199	-		GFF5872	0.69	-0.6
87,282	+		GFF5872	0.77	-1.0
87,339	+		GFF5872	0.82	-1.0
87,340	-		GFF5872	0.83	-0.0
87,719	+				-0.0
87,719	+				-0.7
87,719	+				+0.2
87,719	+				-1.1
87,720	-				+0.6
87,720	-				-0.4
87,720	-				+0.4
87,720	-				+0.7
87,720	-				-0.6
87,720	-				+0.5
87,745	+				+0.2
87,745	+				+0.9
87,988	+		GFF5874	0.15	-0.1
87,988	+		GFF5874	0.15	-0.6
87,988	+		GFF5874	0.15	+1.3
87,988	+		GFF5874	0.15	-0.1
87,988	+		GFF5874	0.15	+0.2
87,988	+		GFF5874	0.15	+1.6
87,988	+		GFF5874	0.15	-0.5
87,989	-		GFF5874	0.15	+0.0
87,989	-		GFF5874	0.15	-0.0
87,989	-		GFF5874	0.15	-0.0
87,989	-		GFF5874	0.15	-0.1
87,989	-		GFF5874	0.15	-0.6
87,989	-		GFF5874	0.15	-1.5
87,989	-		GFF5874	0.15	-1.5
87,989	-		GFF5874	0.15	-1.3
87,999	+		GFF5874	0.16	-0.0
87,999	+		GFF5874	0.16	-1.1
87,999	+		GFF5874	0.16	+0.2
88,000	-		GFF5874	0.16	-0.0
88,060	-		GFF5874	0.23	-0.5
88,125	+		GFF5874	0.30	+0.8
88,125	+		GFF5874	0.30	-0.1
88,126	-		GFF5874	0.30	+0.5
88,126	-		GFF5874	0.30	+0.1
88,126	-		GFF5874	0.30	-1.0
88,209	+		GFF5874	0.39	+0.6
88,209	+		GFF5874	0.39	-0.4
88,209	+		GFF5874	0.39	-0.6
88,210	-		GFF5874	0.39	-0.4
88,210	-		GFF5874	0.39	-0.6
88,210	-		GFF5874	0.39	-0.1
88,210	-		GFF5874	0.39	+2.0
88,210	-		GFF5874	0.39	-0.1
88,269	+		GFF5874	0.46	-0.4
88,269	+		GFF5874	0.46	-0.5
88,269	+		GFF5874	0.46	+1.3
88,269	+		GFF5874	0.46	+0.1
88,269	+		GFF5874	0.46	-0.4
88,269	+		GFF5874	0.46	+0.1
88,269	+		GFF5874	0.46	-0.2
88,269	+		GFF5874	0.46	-0.0
88,269	+		GFF5874	0.46	-0.3
88,269	+		GFF5874	0.46	-0.3
88,270	-		GFF5874	0.46	-1.0
88,270	-		GFF5874	0.46	+0.5
88,270	-		GFF5874	0.46	+1.6
88,270	-		GFF5874	0.46	+0.7
88,270	-		GFF5874	0.46	-1.3
88,270	-		GFF5874	0.46	-0.4
88,270	-		GFF5874	0.46	-1.6
88,270	-		GFF5874	0.46	-1.7
88,270	-		GFF5874	0.46	+0.3
88,270	-		GFF5874	0.46	-0.4
88,270	-		GFF5874	0.46	+0.2
88,270	-		GFF5874	0.46	-0.4
88,270	-		GFF5874	0.46	-0.1
88,270	-		GFF5874	0.46	-0.5
88,270	-		GFF5874	0.46	-0.5
88,270	-		GFF5874	0.46	-0.4
88,297	-		GFF5874	0.49	+0.1
88,299	+		GFF5874	0.49	+0.5
88,299	+		GFF5874	0.49	-0.8
88,299	+		GFF5874	0.49	-0.4
88,299	+		GFF5874	0.49	+0.1
88,299	+		GFF5874	0.49	-0.1
88,299	+		GFF5874	0.49	+0.1
88,300	-		GFF5874	0.49	-0.3
88,300	-		GFF5874	0.49	+0.1
88,300	-		GFF5874	0.49	-0.3
88,383	+		GFF5874	0.59	-0.2
88,383	+		GFF5874	0.59	+0.2
88,383	+		GFF5874	0.59	-0.6
88,384	-		GFF5874	0.59	-0.4
88,384	-		GFF5874	0.59	+0.6
88,384	-		GFF5874	0.59	+0.2
88,384	-		GFF5874	0.59	+1.0
88,425	+		GFF5874	0.63	+0.7
88,425	+		GFF5874	0.63	+1.7
88,425	+		GFF5874	0.63	-0.6
88,425	+		GFF5874	0.63	-1.9
88,425	+		GFF5874	0.63	-0.3
88,425	+		GFF5874	0.63	+0.8
88,425	+		GFF5874	0.63	+0.3
88,425	+		GFF5874	0.63	-0.0
88,425	+		GFF5874	0.63	-0.4
88,425	+		GFF5874	0.63	-0.2
88,425	+		GFF5874	0.63	+0.1
88,425	+		GFF5874	0.63	-0.3
88,425	+		GFF5874	0.63	-0.0
88,425	+		GFF5874	0.63	-0.3
88,425	+		GFF5874	0.63	-0.1
88,426	-		GFF5874	0.63	-1.5
88,426	-		GFF5874	0.63	-0.1
88,426	-		GFF5874	0.63	-0.9
88,426	-		GFF5874	0.63	-0.1
88,426	-		GFF5874	0.63	-1.0
88,426	-		GFF5874	0.63	-0.9
88,426	-		GFF5874	0.63	-0.6
88,426	-		GFF5874	0.63	-0.4
88,426	-		GFF5874	0.63	+1.0
88,426	-		GFF5874	0.63	-0.1
88,426	-		GFF5874	0.63	-0.4
88,426	-		GFF5874	0.63	-0.3
88,442	+		GFF5874	0.65	+0.4
88,442	+		GFF5874	0.65	-0.3
88,442	+		GFF5874	0.65	-0.6
88,442	+		GFF5874	0.65	+2.0
88,442	+		GFF5874	0.65	-0.3
88,442	+		GFF5874	0.65	-0.3
88,443	-		GFF5874	0.65	-0.5
88,443	-		GFF5874	0.65	+0.1
88,443	-		GFF5874	0.65	+0.1
88,443	-		GFF5874	0.65	-0.8
88,443	-		GFF5874	0.65	-0.6
88,443	-		GFF5874	0.65	-0.2
88,443	-		GFF5874	0.65	+1.0