Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5852 and GFF5853 overlap by 14 nucleotides GFF5853 and GFF5854 overlap by 4 nucleotides
GFF5852 - Type I secretion membrane fusion protein, HlyD family @ Type I secretion system, membrane fusion protein LapC, at 30,923 to 32,179
GFF5852
GFF5853 - Type I secretion system ATPase, LssB family LapB, at 32,166 to 34,292
GFF5853
GFF5854 - Type I secretion system, outer membrane component LapE, at 34,289 to 35,713
GFF5854
Position (kb) 32
33
34
35 Strain fitness (log2 ratio) -1
0
1
2 at 31.174 kb on - strand, within GFF5852 at 31.182 kb on + strand, within GFF5852 at 31.183 kb on - strand, within GFF5852 at 31.189 kb on - strand, within GFF5852 at 31.189 kb on - strand, within GFF5852 at 31.189 kb on - strand, within GFF5852 at 31.476 kb on + strand, within GFF5852 at 31.476 kb on + strand, within GFF5852 at 31.479 kb on + strand, within GFF5852 at 31.735 kb on + strand, within GFF5852 at 31.736 kb on - strand, within GFF5852 at 32.866 kb on + strand, within GFF5853 at 33.736 kb on + strand, within GFF5853 at 33.736 kb on + strand, within GFF5853 at 33.737 kb on - strand, within GFF5853 at 33.737 kb on - strand, within GFF5853 at 33.737 kb on - strand, within GFF5853 at 33.871 kb on + strand, within GFF5853 at 33.871 kb on + strand, within GFF5853 at 33.872 kb on - strand, within GFF5853 at 33.872 kb on - strand, within GFF5853 at 33.872 kb on - strand, within GFF5853 at 33.872 kb on - strand, within GFF5853 at 33.872 kb on - strand, within GFF5853 at 34.264 kb on + strand at 34.335 kb on + strand at 34.335 kb on + strand at 34.368 kb on + strand at 34.428 kb on + strand at 34.429 kb on - strand at 34.429 kb on - strand at 34.429 kb on - strand at 34.429 kb on - strand at 34.429 kb on - strand at 34.482 kb on + strand, within GFF5854 at 34.482 kb on + strand, within GFF5854 at 34.482 kb on + strand, within GFF5854 at 34.689 kb on + strand, within GFF5854 at 34.690 kb on - strand, within GFF5854 at 34.690 kb on - strand, within GFF5854 at 34.690 kb on - strand, within GFF5854 at 34.690 kb on - strand, within GFF5854 at 34.726 kb on - strand, within GFF5854 at 34.726 kb on - strand, within GFF5854 at 34.726 kb on - strand, within GFF5854
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 31,174 - GFF5852 0.20 -1.0 31,182 + GFF5852 0.21 +0.3 31,183 - GFF5852 0.21 +0.4 31,189 - GFF5852 0.21 -1.0 31,189 - GFF5852 0.21 -0.5 31,189 - GFF5852 0.21 -0.7 31,476 + GFF5852 0.44 +0.6 31,476 + GFF5852 0.44 -0.1 31,479 + GFF5852 0.44 +0.4 31,735 + GFF5852 0.65 -0.3 31,736 - GFF5852 0.65 +0.5 32,866 + GFF5853 0.33 -0.6 33,736 + GFF5853 0.74 +1.0 33,736 + GFF5853 0.74 +1.7 33,737 - GFF5853 0.74 -0.6 33,737 - GFF5853 0.74 -0.1 33,737 - GFF5853 0.74 -0.4 33,871 + GFF5853 0.80 -0.7 33,871 + GFF5853 0.80 -0.5 33,872 - GFF5853 0.80 +0.1 33,872 - GFF5853 0.80 -1.2 33,872 - GFF5853 0.80 +0.1 33,872 - GFF5853 0.80 -0.7 33,872 - GFF5853 0.80 -1.4 34,264 + -0.4 34,335 + +0.2 34,335 + -0.4 34,368 + -0.6 34,428 + -0.3 34,429 - -0.0 34,429 - -0.6 34,429 - +0.1 34,429 - -0.2 34,429 - -0.7 34,482 + GFF5854 0.14 +2.0 34,482 + GFF5854 0.14 +0.3 34,482 + GFF5854 0.14 +0.2 34,689 + GFF5854 0.28 +0.2 34,690 - GFF5854 0.28 -0.1 34,690 - GFF5854 0.28 -0.3 34,690 - GFF5854 0.28 -1.1 34,690 - GFF5854 0.28 +0.4 34,726 - GFF5854 0.31 -0.6 34,726 - GFF5854 0.31 +0.0 34,726 - GFF5854 0.31 +0.1
Or see this region's nucleotide sequence