Strain Fitness in Variovorax sp. SCN45 around GFF5831

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5830 and GFF5831 are separated by 46 nucleotidesGFF5831 and GFF5832 are separated by 41 nucleotidesGFF5832 and GFF5833 are separated by 10 nucleotides GFF5830 - Aldehyde dehydrogenase (EC 1.2.1.3), at 6,241 to 7,743 GFF5830 GFF5831 - Ketosteroid isomerase-related protein, at 7,790 to 8,179 GFF5831 GFF5832 - MoaF protein precursor, at 8,221 to 9,027 GFF5832 GFF5833 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 9,038 to 9,847 GFF5833 Position (kb) 7 8 9Strain fitness (log2 ratio) -1 0 1at 7.268 kb on + strand, within GFF5830at 7.268 kb on + strand, within GFF5830at 7.268 kb on + strand, within GFF5830at 7.269 kb on - strand, within GFF5830at 7.269 kb on - strand, within GFF5830at 7.349 kb on + strand, within GFF5830at 7.350 kb on - strand, within GFF5830at 7.350 kb on - strand, within GFF5830at 7.475 kb on + strand, within GFF5830at 7.475 kb on + strand, within GFF5830at 7.475 kb on + strand, within GFF5830at 7.476 kb on - strand, within GFF5830at 7.476 kb on - strand, within GFF5830at 7.631 kb on + strandat 7.631 kb on + strandat 7.632 kb on - strandat 7.632 kb on - strandat 7.924 kb on - strand, within GFF5831at 7.924 kb on - strand, within GFF5831at 7.924 kb on - strand, within GFF5831at 8.145 kb on + strandat 8.146 kb on - strandat 8.146 kb on - strandat 8.250 kb on - strandat 8.408 kb on + strand, within GFF5832at 8.408 kb on + strand, within GFF5832at 8.408 kb on + strand, within GFF5832at 8.408 kb on + strand, within GFF5832at 8.409 kb on - strand, within GFF5832at 8.409 kb on - strand, within GFF5832at 8.409 kb on - strand, within GFF5832at 8.432 kb on + strand, within GFF5832at 8.432 kb on + strand, within GFF5832at 8.433 kb on - strand, within GFF5832at 8.510 kb on + strand, within GFF5832at 8.510 kb on + strand, within GFF5832at 8.510 kb on + strand, within GFF5832at 8.510 kb on + strand, within GFF5832at 8.511 kb on - strand, within GFF5832at 8.511 kb on - strand, within GFF5832at 8.511 kb on - strand, within GFF5832at 8.511 kb on - strand, within GFF5832at 8.511 kb on - strand, within GFF5832at 8.511 kb on - strand, within GFF5832at 8.522 kb on + strand, within GFF5832at 8.522 kb on + strand, within GFF5832at 8.522 kb on + strand, within GFF5832at 8.522 kb on + strand, within GFF5832at 8.522 kb on + strand, within GFF5832at 8.522 kb on + strand, within GFF5832at 8.522 kb on + strand, within GFF5832at 8.522 kb on + strand, within GFF5832at 8.523 kb on - strand, within GFF5832at 8.523 kb on - strand, within GFF5832at 8.523 kb on - strand, within GFF5832at 8.540 kb on + strand, within GFF5832at 8.540 kb on + strand, within GFF5832at 8.541 kb on - strand, within GFF5832at 8.807 kb on + strand, within GFF5832at 8.808 kb on - strand, within GFF5832at 8.808 kb on - strand, within GFF5832at 8.984 kb on + strandat 8.984 kb on + strandat 8.984 kb on + strandat 8.984 kb on + strandat 8.985 kb on - strandat 8.985 kb on - strandat 8.985 kb on - strandat 8.985 kb on - strandat 8.985 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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7,268 + GFF5830 0.68 -1.3
7,268 + GFF5830 0.68 +0.3
7,268 + GFF5830 0.68 +0.4
7,269 - GFF5830 0.68 +0.1
7,269 - GFF5830 0.68 +0.2
7,349 + GFF5830 0.74 +1.2
7,350 - GFF5830 0.74 -0.6
7,350 - GFF5830 0.74 -0.2
7,475 + GFF5830 0.82 +0.5
7,475 + GFF5830 0.82 -0.3
7,475 + GFF5830 0.82 -1.3
7,476 - GFF5830 0.82 -0.6
7,476 - GFF5830 0.82 +1.2
7,631 + -1.1
7,631 + +0.1
7,632 - +0.6
7,632 - +0.1
7,924 - GFF5831 0.34 -0.4
7,924 - GFF5831 0.34 -1.3
7,924 - GFF5831 0.34 -1.2
8,145 + +0.2
8,146 - +0.1
8,146 - -0.5
8,250 - -0.7
8,408 + GFF5832 0.23 +0.5
8,408 + GFF5832 0.23 -1.3
8,408 + GFF5832 0.23 -0.8
8,408 + GFF5832 0.23 +0.4
8,409 - GFF5832 0.23 -0.6
8,409 - GFF5832 0.23 +0.5
8,409 - GFF5832 0.23 -1.6
8,432 + GFF5832 0.26 +0.8
8,432 + GFF5832 0.26 -0.2
8,433 - GFF5832 0.26 +0.1
8,510 + GFF5832 0.36 -0.6
8,510 + GFF5832 0.36 -0.0
8,510 + GFF5832 0.36 +0.7
8,510 + GFF5832 0.36 -0.1
8,511 - GFF5832 0.36 -0.0
8,511 - GFF5832 0.36 -0.0
8,511 - GFF5832 0.36 -0.2
8,511 - GFF5832 0.36 -0.3
8,511 - GFF5832 0.36 -0.2
8,511 - GFF5832 0.36 -0.1
8,522 + GFF5832 0.37 -1.5
8,522 + GFF5832 0.37 -0.6
8,522 + GFF5832 0.37 +0.2
8,522 + GFF5832 0.37 -0.0
8,522 + GFF5832 0.37 +0.7
8,522 + GFF5832 0.37 +0.4
8,522 + GFF5832 0.37 -0.2
8,522 + GFF5832 0.37 -0.6
8,523 - GFF5832 0.37 -0.4
8,523 - GFF5832 0.37 +0.6
8,523 - GFF5832 0.37 -0.3
8,540 + GFF5832 0.40 -0.3
8,540 + GFF5832 0.40 -0.1
8,541 - GFF5832 0.40 -0.3
8,807 + GFF5832 0.73 -0.7
8,808 - GFF5832 0.73 +0.2
8,808 - GFF5832 0.73 -0.6
8,984 + -1.3
8,984 + +0.2
8,984 + -0.2
8,984 + -1.2
8,985 - +0.4
8,985 - +0.7
8,985 - +0.4
8,985 - +0.8
8,985 - -0.5

Or see this region's nucleotide sequence