Strain Fitness in Variovorax sp. SCN45 around GFF5820

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5818 and GFF5819 are separated by 242 nucleotidesGFF5819 and GFF5820 are separated by 246 nucleotidesGFF5820 and GFF5821 are separated by 270 nucleotides GFF5818 - Two-component transcriptional response regulator, NarL/FixJ family, at 197,742 to 198,377 GFF5818 GFF5819 - no description, at 198,620 to 198,874 GFF5819 GFF5820 - hypothetical protein, at 199,121 to 199,843 GFF5820 GFF5821 - no description, at 200,114 to 200,938 GFF5821 Position (kb) 199 200Strain fitness (log2 ratio) -2 -1 0 1 2at 198.339 kb on + strandat 198.468 kb on + strandat 198.469 kb on - strandat 198.501 kb on + strandat 198.596 kb on + strandat 198.597 kb on - strandat 198.597 kb on - strandat 198.635 kb on - strandat 198.683 kb on - strand, within GFF5819at 198.862 kb on + strandat 198.863 kb on - strandat 198.863 kb on - strandat 199.001 kb on + strandat 199.001 kb on + strandat 199.019 kb on - strandat 199.040 kb on + strandat 199.041 kb on - strandat 199.080 kb on + strandat 199.081 kb on - strandat 199.084 kb on - strandat 199.087 kb on + strandat 199.087 kb on + strandat 199.087 kb on + strandat 199.088 kb on - strandat 199.091 kb on + strandat 199.091 kb on + strandat 199.092 kb on - strandat 199.092 kb on - strandat 199.092 kb on - strandat 199.092 kb on - strandat 199.092 kb on - strandat 199.120 kb on + strandat 199.120 kb on + strandat 199.120 kb on + strandat 199.120 kb on + strandat 199.121 kb on - strandat 199.121 kb on - strandat 199.121 kb on - strandat 199.121 kb on - strandat 199.121 kb on - strandat 199.198 kb on - strand, within GFF5820at 199.271 kb on - strand, within GFF5820at 199.271 kb on - strand, within GFF5820at 199.271 kb on - strand, within GFF5820at 199.302 kb on - strand, within GFF5820at 199.302 kb on - strand, within GFF5820at 199.382 kb on + strand, within GFF5820at 199.409 kb on + strand, within GFF5820at 199.410 kb on - strand, within GFF5820at 199.437 kb on + strand, within GFF5820at 199.444 kb on + strand, within GFF5820at 199.444 kb on + strand, within GFF5820at 199.444 kb on + strand, within GFF5820at 199.445 kb on - strand, within GFF5820at 199.445 kb on - strand, within GFF5820at 199.583 kb on + strand, within GFF5820at 199.583 kb on + strand, within GFF5820at 199.583 kb on + strand, within GFF5820at 199.584 kb on - strand, within GFF5820at 199.584 kb on - strand, within GFF5820at 199.584 kb on - strand, within GFF5820at 199.705 kb on + strand, within GFF5820at 199.710 kb on + strand, within GFF5820at 199.710 kb on + strand, within GFF5820at 199.710 kb on + strand, within GFF5820at 199.710 kb on + strand, within GFF5820at 199.710 kb on + strand, within GFF5820at 199.711 kb on - strand, within GFF5820at 199.724 kb on + strand, within GFF5820at 199.725 kb on - strand, within GFF5820at 199.725 kb on - strand, within GFF5820at 199.758 kb on - strand, within GFF5820at 199.791 kb on + strandat 199.791 kb on + strandat 199.795 kb on + strandat 199.814 kb on - strandat 199.814 kb on - strandat 199.814 kb on - strandat 199.835 kb on + strandat 199.900 kb on + strandat 199.900 kb on + strandat 199.901 kb on - strandat 199.901 kb on - strandat 199.908 kb on - strandat 199.916 kb on - strandat 200.035 kb on + strandat 200.080 kb on + strandat 200.089 kb on + strandat 200.089 kb on + strandat 200.090 kb on - strandat 200.106 kb on - strandat 200.111 kb on + strandat 200.112 kb on - strandat 200.176 kb on + strandat 200.200 kb on + strand, within GFF5821at 200.201 kb on - strand, within GFF5821at 200.347 kb on + strand, within GFF5821at 200.348 kb on - strand, within GFF5821at 200.348 kb on - strand, within GFF5821at 200.348 kb on - strand, within GFF5821at 200.384 kb on + strand, within GFF5821at 200.384 kb on + strand, within GFF5821at 200.385 kb on - strand, within GFF5821at 200.385 kb on - strand, within GFF5821at 200.402 kb on + strand, within GFF5821at 200.403 kb on - strand, within GFF5821at 200.403 kb on - strand, within GFF5821at 200.474 kb on + strand, within GFF5821at 200.475 kb on - strand, within GFF5821at 200.475 kb on - strand, within GFF5821at 200.478 kb on + strand, within GFF5821at 200.478 kb on + strand, within GFF5821at 200.480 kb on + strand, within GFF5821at 200.480 kb on + strand, within GFF5821at 200.480 kb on + strand, within GFF5821at 200.481 kb on - strand, within GFF5821at 200.481 kb on - strand, within GFF5821at 200.513 kb on + strand, within GFF5821at 200.513 kb on + strand, within GFF5821at 200.623 kb on - strand, within GFF5821at 200.623 kb on - strand, within GFF5821at 200.624 kb on + strand, within GFF5821at 200.624 kb on + strand, within GFF5821at 200.624 kb on + strand, within GFF5821at 200.625 kb on - strand, within GFF5821at 200.718 kb on + strand, within GFF5821at 200.768 kb on + strand, within GFF5821at 200.769 kb on - strand, within GFF5821at 200.769 kb on - strand, within GFF5821at 200.781 kb on - strand, within GFF5821at 200.781 kb on - strand, within GFF5821at 200.838 kb on + strand, within GFF5821at 200.839 kb on - strand, within GFF5821at 200.839 kb on - strand, within GFF5821at 200.839 kb on - strand, within GFF5821

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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198,339 + +0.3
198,468 + -0.7
198,469 - +0.0
198,501 + -0.9
198,596 + -0.5
198,597 - +0.4
198,597 - -0.9
198,635 - -0.1
198,683 - GFF5819 0.25 -0.1
198,862 + +0.1
198,863 - -0.1
198,863 - +0.1
199,001 + +0.6
199,001 + -0.3
199,019 - +0.1
199,040 + -0.7
199,041 - -0.3
199,080 + +1.0
199,081 - -1.3
199,084 - +0.3
199,087 + +0.1
199,087 + +2.3
199,087 + +0.1
199,088 - +2.1
199,091 + -2.0
199,091 + -0.2
199,092 - -0.1
199,092 - -0.2
199,092 - +1.0
199,092 - +0.2
199,092 - +0.9
199,120 + -0.5
199,120 + +0.3
199,120 + -0.8
199,120 + +0.8
199,121 - -0.6
199,121 - -0.3
199,121 - +0.2
199,121 - -0.4
199,121 - +1.3
199,198 - GFF5820 0.11 +0.2
199,271 - GFF5820 0.21 -0.1
199,271 - GFF5820 0.21 +0.5
199,271 - GFF5820 0.21 +0.3
199,302 - GFF5820 0.25 -0.7
199,302 - GFF5820 0.25 +0.2
199,382 + GFF5820 0.36 +0.9
199,409 + GFF5820 0.40 -0.0
199,410 - GFF5820 0.40 -0.0
199,437 + GFF5820 0.44 +0.1
199,444 + GFF5820 0.45 -0.1
199,444 + GFF5820 0.45 -0.2
199,444 + GFF5820 0.45 -0.7
199,445 - GFF5820 0.45 +1.0
199,445 - GFF5820 0.45 +0.4
199,583 + GFF5820 0.64 -0.5
199,583 + GFF5820 0.64 +0.9
199,583 + GFF5820 0.64 +0.2
199,584 - GFF5820 0.64 +0.4
199,584 - GFF5820 0.64 -0.1
199,584 - GFF5820 0.64 -1.0
199,705 + GFF5820 0.81 +0.6
199,710 + GFF5820 0.81 -0.3
199,710 + GFF5820 0.81 -0.2
199,710 + GFF5820 0.81 -1.1
199,710 + GFF5820 0.81 +0.1
199,710 + GFF5820 0.81 -0.2
199,711 - GFF5820 0.82 -0.1
199,724 + GFF5820 0.83 +0.7
199,725 - GFF5820 0.84 -0.5
199,725 - GFF5820 0.84 +0.0
199,758 - GFF5820 0.88 -0.3
199,791 + -0.1
199,791 + +0.9
199,795 + -0.6
199,814 - +0.8
199,814 - +1.0
199,814 - -0.8
199,835 + -0.5
199,900 + +0.0
199,900 + -1.3
199,901 - +0.6
199,901 - +0.1
199,908 - +0.4
199,916 - -0.6
200,035 + +1.1
200,080 + -0.0
200,089 + -0.0
200,089 + -0.1
200,090 - +0.6
200,106 - -0.2
200,111 + -0.2
200,112 - +0.2
200,176 + +1.4
200,200 + GFF5821 0.10 -0.3
200,201 - GFF5821 0.11 -0.2
200,347 + GFF5821 0.28 -0.8
200,348 - GFF5821 0.28 -0.9
200,348 - GFF5821 0.28 -1.6
200,348 - GFF5821 0.28 +0.7
200,384 + GFF5821 0.33 -1.4
200,384 + GFF5821 0.33 +0.2
200,385 - GFF5821 0.33 -0.7
200,385 - GFF5821 0.33 -1.0
200,402 + GFF5821 0.35 -1.0
200,403 - GFF5821 0.35 +0.1
200,403 - GFF5821 0.35 +0.3
200,474 + GFF5821 0.44 -0.1
200,475 - GFF5821 0.44 +0.3
200,475 - GFF5821 0.44 -0.5
200,478 + GFF5821 0.44 -0.1
200,478 + GFF5821 0.44 -0.9
200,480 + GFF5821 0.44 +0.3
200,480 + GFF5821 0.44 +0.6
200,480 + GFF5821 0.44 -0.6
200,481 - GFF5821 0.44 +0.5
200,481 - GFF5821 0.44 -0.1
200,513 + GFF5821 0.48 -0.6
200,513 + GFF5821 0.48 -0.4
200,623 - GFF5821 0.62 +0.0
200,623 - GFF5821 0.62 +0.9
200,624 + GFF5821 0.62 -0.3
200,624 + GFF5821 0.62 -0.0
200,624 + GFF5821 0.62 -0.8
200,625 - GFF5821 0.62 -0.6
200,718 + GFF5821 0.73 +0.4
200,768 + GFF5821 0.79 -1.5
200,769 - GFF5821 0.79 -0.0
200,769 - GFF5821 0.79 +0.3
200,781 - GFF5821 0.81 +1.5
200,781 - GFF5821 0.81 +0.6
200,838 + GFF5821 0.88 +0.4
200,839 - GFF5821 0.88 +0.9
200,839 - GFF5821 0.88 +0.9
200,839 - GFF5821 0.88 +0.2

Or see this region's nucleotide sequence