Strain Fitness in Variovorax sp. SCN45 around GFF5785

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5783 and GFF5784 are separated by 28 nucleotidesGFF5784 and GFF5785 are separated by 177 nucleotidesGFF5785 and GFF5786 are separated by 142 nucleotidesGFF5786 and GFF5787 are separated by 74 nucleotides GFF5783 - hypothetical protein, at 158,074 to 159,402 GFF5783 GFF5784 - hypothetical protein, at 159,431 to 159,832 GFF5784 GFF5785 - FIG00931285: hypothetical protein, at 160,010 to 161,425 GFF5785 GFF5786 - Transcriptional regulator, LuxR family, at 161,568 to 162,170 GFF5786 GFF5787 - Tryptophanyl-tRNA synthetase (EC 6.1.1.2), at 162,245 to 163,576 GFF5787 Position (kb) 160 161 162Strain fitness (log2 ratio) -2 -1 0 1at 159.118 kb on + strand, within GFF5783at 159.118 kb on + strand, within GFF5783at 159.119 kb on - strand, within GFF5783at 159.119 kb on - strand, within GFF5783at 159.119 kb on - strand, within GFF5783at 159.119 kb on - strand, within GFF5783at 159.119 kb on - strand, within GFF5783at 159.119 kb on - strand, within GFF5783at 159.119 kb on - strand, within GFF5783at 159.400 kb on + strandat 159.401 kb on - strandat 159.401 kb on - strandat 159.907 kb on + strandat 159.907 kb on + strandat 159.907 kb on + strandat 159.937 kb on + strandat 160.009 kb on + strandat 160.010 kb on - strandat 160.124 kb on + strandat 160.124 kb on + strandat 160.125 kb on - strandat 160.175 kb on + strand, within GFF5785at 160.175 kb on + strand, within GFF5785at 160.175 kb on + strand, within GFF5785at 160.175 kb on + strand, within GFF5785at 160.175 kb on + strand, within GFF5785at 160.175 kb on + strand, within GFF5785at 160.175 kb on + strand, within GFF5785at 160.175 kb on + strand, within GFF5785at 160.175 kb on + strand, within GFF5785at 160.175 kb on + strand, within GFF5785at 160.175 kb on + strand, within GFF5785at 160.176 kb on - strand, within GFF5785at 160.176 kb on - strand, within GFF5785at 160.176 kb on - strand, within GFF5785at 160.176 kb on - strand, within GFF5785at 160.176 kb on - strand, within GFF5785at 160.176 kb on - strand, within GFF5785at 160.176 kb on - strand, within GFF5785at 160.176 kb on - strand, within GFF5785at 160.256 kb on + strand, within GFF5785at 160.256 kb on + strand, within GFF5785at 160.256 kb on + strand, within GFF5785at 160.257 kb on - strand, within GFF5785at 160.268 kb on + strand, within GFF5785at 160.313 kb on + strand, within GFF5785at 160.478 kb on + strand, within GFF5785at 160.478 kb on + strand, within GFF5785at 160.478 kb on + strand, within GFF5785at 160.478 kb on + strand, within GFF5785at 160.479 kb on - strand, within GFF5785at 160.562 kb on + strand, within GFF5785at 160.563 kb on - strand, within GFF5785at 160.568 kb on + strand, within GFF5785at 160.568 kb on + strand, within GFF5785at 160.568 kb on + strand, within GFF5785at 160.568 kb on + strand, within GFF5785at 160.568 kb on + strand, within GFF5785at 160.569 kb on - strand, within GFF5785at 160.628 kb on - strand, within GFF5785at 160.628 kb on - strand, within GFF5785at 160.631 kb on + strand, within GFF5785at 160.631 kb on + strand, within GFF5785at 160.632 kb on - strand, within GFF5785at 160.632 kb on - strand, within GFF5785at 160.632 kb on - strand, within GFF5785at 160.796 kb on + strand, within GFF5785at 160.985 kb on + strand, within GFF5785at 160.985 kb on + strand, within GFF5785at 161.108 kb on + strand, within GFF5785at 161.109 kb on - strand, within GFF5785at 161.109 kb on - strand, within GFF5785at 161.109 kb on - strand, within GFF5785at 161.109 kb on - strand, within GFF5785at 161.109 kb on - strand, within GFF5785at 161.179 kb on + strand, within GFF5785at 161.180 kb on - strand, within GFF5785at 161.231 kb on + strand, within GFF5785at 161.231 kb on + strand, within GFF5785at 161.231 kb on + strand, within GFF5785at 161.232 kb on - strand, within GFF5785at 161.232 kb on - strand, within GFF5785at 161.232 kb on - strand, within GFF5785at 161.232 kb on - strand, within GFF5785at 161.232 kb on - strand, within GFF5785at 161.232 kb on - strand, within GFF5785at 161.599 kb on + strandat 161.599 kb on + strandat 161.599 kb on + strandat 161.599 kb on + strandat 161.599 kb on + strandat 161.599 kb on + strandat 161.599 kb on + strandat 161.599 kb on + strandat 161.600 kb on - strandat 161.600 kb on - strandat 161.600 kb on - strandat 161.869 kb on + strand, within GFF5786at 161.869 kb on + strand, within GFF5786at 161.869 kb on + strand, within GFF5786at 161.869 kb on + strand, within GFF5786at 161.869 kb on + strand, within GFF5786at 161.870 kb on - strand, within GFF5786at 161.870 kb on - strand, within GFF5786at 161.870 kb on - strand, within GFF5786at 161.870 kb on - strand, within GFF5786at 161.870 kb on - strand, within GFF5786at 161.870 kb on - strand, within GFF5786at 161.870 kb on - strand, within GFF5786at 161.870 kb on - strand, within GFF5786at 161.870 kb on - strand, within GFF5786at 161.870 kb on - strand, within GFF5786at 161.930 kb on - strand, within GFF5786at 161.930 kb on - strand, within GFF5786at 162.160 kb on + strandat 162.160 kb on + strandat 162.160 kb on + strandat 162.160 kb on + strandat 162.161 kb on - strandat 162.161 kb on - strandat 162.161 kb on - strandat 162.161 kb on - strandat 162.161 kb on - strandat 162.161 kb on - strandat 162.161 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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159,118 + GFF5783 0.79 -0.4
159,118 + GFF5783 0.79 -0.2
159,119 - GFF5783 0.79 -0.4
159,119 - GFF5783 0.79 +0.4
159,119 - GFF5783 0.79 -0.1
159,119 - GFF5783 0.79 -0.3
159,119 - GFF5783 0.79 +0.3
159,119 - GFF5783 0.79 +0.4
159,119 - GFF5783 0.79 -0.2
159,400 + -0.5
159,401 - -0.1
159,401 - +0.5
159,907 + +0.3
159,907 + +1.3
159,907 + -0.1
159,937 + -0.8
160,009 + +0.2
160,010 - +0.2
160,124 + -0.3
160,124 + -0.6
160,125 - -1.0
160,175 + GFF5785 0.12 +0.9
160,175 + GFF5785 0.12 -0.3
160,175 + GFF5785 0.12 +0.9
160,175 + GFF5785 0.12 -2.1
160,175 + GFF5785 0.12 +0.3
160,175 + GFF5785 0.12 -0.6
160,175 + GFF5785 0.12 +0.3
160,175 + GFF5785 0.12 +1.6
160,175 + GFF5785 0.12 +0.0
160,175 + GFF5785 0.12 -0.3
160,175 + GFF5785 0.12 +0.0
160,176 - GFF5785 0.12 +1.1
160,176 - GFF5785 0.12 +0.6
160,176 - GFF5785 0.12 -0.3
160,176 - GFF5785 0.12 -0.5
160,176 - GFF5785 0.12 -0.2
160,176 - GFF5785 0.12 +1.4
160,176 - GFF5785 0.12 +0.4
160,176 - GFF5785 0.12 +0.4
160,256 + GFF5785 0.17 +1.5
160,256 + GFF5785 0.17 +0.3
160,256 + GFF5785 0.17 -0.3
160,257 - GFF5785 0.17 +0.1
160,268 + GFF5785 0.18 -0.3
160,313 + GFF5785 0.21 -0.1
160,478 + GFF5785 0.33 -0.7
160,478 + GFF5785 0.33 -0.8
160,478 + GFF5785 0.33 -0.2
160,478 + GFF5785 0.33 +0.9
160,479 - GFF5785 0.33 +0.6
160,562 + GFF5785 0.39 -0.1
160,563 - GFF5785 0.39 -0.4
160,568 + GFF5785 0.39 +0.2
160,568 + GFF5785 0.39 +0.2
160,568 + GFF5785 0.39 -0.3
160,568 + GFF5785 0.39 +1.3
160,568 + GFF5785 0.39 +0.6
160,569 - GFF5785 0.39 +0.7
160,628 - GFF5785 0.44 +0.0
160,628 - GFF5785 0.44 +0.3
160,631 + GFF5785 0.44 +0.7
160,631 + GFF5785 0.44 +0.3
160,632 - GFF5785 0.44 -0.3
160,632 - GFF5785 0.44 -0.1
160,632 - GFF5785 0.44 +0.6
160,796 + GFF5785 0.56 +1.4
160,985 + GFF5785 0.69 +0.3
160,985 + GFF5785 0.69 -0.7
161,108 + GFF5785 0.78 -0.3
161,109 - GFF5785 0.78 +0.2
161,109 - GFF5785 0.78 +0.9
161,109 - GFF5785 0.78 +0.4
161,109 - GFF5785 0.78 +0.9
161,109 - GFF5785 0.78 -0.3
161,179 + GFF5785 0.83 +0.7
161,180 - GFF5785 0.83 -0.2
161,231 + GFF5785 0.86 +0.1
161,231 + GFF5785 0.86 -0.8
161,231 + GFF5785 0.86 -0.6
161,232 - GFF5785 0.86 +0.1
161,232 - GFF5785 0.86 +0.4
161,232 - GFF5785 0.86 +1.3
161,232 - GFF5785 0.86 +0.4
161,232 - GFF5785 0.86 +0.7
161,232 - GFF5785 0.86 -0.5
161,599 + +0.3
161,599 + +0.0
161,599 + +0.4
161,599 + +1.4
161,599 + +0.9
161,599 + -0.3
161,599 + -0.8
161,599 + +1.2
161,600 - +0.7
161,600 - +0.3
161,600 - +0.3
161,869 + GFF5786 0.50 -0.3
161,869 + GFF5786 0.50 -0.1
161,869 + GFF5786 0.50 -0.3
161,869 + GFF5786 0.50 -0.6
161,869 + GFF5786 0.50 +0.2
161,870 - GFF5786 0.50 +0.1
161,870 - GFF5786 0.50 +0.2
161,870 - GFF5786 0.50 +0.0
161,870 - GFF5786 0.50 +0.7
161,870 - GFF5786 0.50 -0.6
161,870 - GFF5786 0.50 -0.1
161,870 - GFF5786 0.50 -0.1
161,870 - GFF5786 0.50 -2.1
161,870 - GFF5786 0.50 +0.6
161,870 - GFF5786 0.50 +0.6
161,930 - GFF5786 0.60 -0.1
161,930 - GFF5786 0.60 -0.1
162,160 + -1.2
162,160 + -1.7
162,160 + -0.4
162,160 + +0.1
162,161 - -0.5
162,161 - +0.7
162,161 - +0.5
162,161 - +0.7
162,161 - -0.2
162,161 - +0.5
162,161 - -0.2

Or see this region's nucleotide sequence