Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF570 and GFF571 are separated by 7 nucleotides GFF571 and GFF572 overlap by 4 nucleotides GFF572 and GFF573 overlap by 4 nucleotides
GFF570 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25), at 616,372 to 617,526
GFF570
GFF571 - 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78), at 617,534 to 617,998
GFF571
GFF572 - Transcription termination protein NusB, at 617,995 to 618,552
GFF572
GFF573 - Valine--pyruvate aminotransferase (EC 2.6.1.66), at 618,549 to 619,745
GFF573
Position (kb) 617
618 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 617.395 kb on + strand, within GFF570 at 617.395 kb on + strand, within GFF570 at 617.396 kb on - strand, within GFF570 at 617.488 kb on + strand at 617.489 kb on - strand at 617.509 kb on + strand at 617.509 kb on + strand at 617.509 kb on + strand at 617.510 kb on - strand at 617.804 kb on + strand, within GFF571 at 617.804 kb on + strand, within GFF571 at 617.804 kb on + strand, within GFF571 at 617.804 kb on + strand, within GFF571 at 617.804 kb on + strand, within GFF571 at 617.804 kb on + strand, within GFF571 at 617.804 kb on + strand, within GFF571 at 617.864 kb on + strand, within GFF571 at 618.588 kb on + strand at 618.588 kb on + strand at 618.588 kb on + strand at 618.588 kb on + strand at 618.588 kb on + strand at 618.588 kb on + strand at 618.588 kb on + strand at 618.588 kb on + strand at 618.588 kb on + strand at 618.588 kb on + strand at 618.588 kb on + strand at 618.588 kb on + strand at 618.588 kb on + strand at 618.588 kb on + strand at 618.588 kb on + strand at 618.588 kb on + strand at 618.588 kb on + strand at 618.588 kb on + strand at 618.588 kb on + strand at 618.588 kb on + strand at 618.588 kb on + strand at 618.588 kb on + strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.589 kb on - strand at 618.727 kb on + strand, within GFF573 at 618.727 kb on + strand, within GFF573 at 618.747 kb on + strand, within GFF573 at 618.747 kb on + strand, within GFF573 at 618.747 kb on + strand, within GFF573 at 618.747 kb on + strand, within GFF573 at 618.747 kb on + strand, within GFF573 at 618.747 kb on + strand, within GFF573 at 618.747 kb on + strand, within GFF573 at 618.747 kb on + strand, within GFF573 at 618.747 kb on + strand, within GFF573 at 618.747 kb on + strand, within GFF573 at 618.747 kb on + strand, within GFF573 at 618.747 kb on + strand, within GFF573 at 618.748 kb on - strand, within GFF573 at 618.748 kb on - strand, within GFF573 at 618.748 kb on - strand, within GFF573 at 618.748 kb on - strand, within GFF573 at 618.748 kb on - strand, within GFF573 at 618.748 kb on - strand, within GFF573 at 618.748 kb on - strand, within GFF573 at 618.798 kb on + strand, within GFF573 at 618.798 kb on + strand, within GFF573 at 618.798 kb on + strand, within GFF573 at 618.930 kb on + strand, within GFF573 at 618.930 kb on + strand, within GFF573 at 618.930 kb on + strand, within GFF573 at 618.931 kb on - strand, within GFF573 at 618.931 kb on - strand, within GFF573 at 618.931 kb on - strand, within GFF573
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 617,395 + GFF570 0.89 -0.9 617,395 + GFF570 0.89 +0.0 617,396 - GFF570 0.89 +2.2 617,488 + -0.4 617,489 - +1.0 617,509 + +0.2 617,509 + -1.5 617,509 + -1.3 617,510 - -0.7 617,804 + GFF571 0.58 -0.0 617,804 + GFF571 0.58 -0.6 617,804 + GFF571 0.58 +1.3 617,804 + GFF571 0.58 -1.2 617,804 + GFF571 0.58 -0.8 617,804 + GFF571 0.58 -0.7 617,804 + GFF571 0.58 -0.5 617,864 + GFF571 0.71 -0.4 618,588 + +0.3 618,588 + -0.5 618,588 + +1.1 618,588 + +1.3 618,588 + +0.3 618,588 + -0.4 618,588 + +0.1 618,588 + -0.2 618,588 + +0.0 618,588 + -0.3 618,588 + -0.0 618,588 + -0.2 618,588 + +0.3 618,588 + -0.5 618,588 + -1.0 618,588 + +0.0 618,588 + -0.2 618,588 + -0.2 618,588 + +0.4 618,588 + +2.8 618,588 + -0.9 618,588 + -0.7 618,589 - +0.1 618,589 - -0.2 618,589 - -0.3 618,589 - +1.3 618,589 - +0.3 618,589 - -0.2 618,589 - +0.8 618,589 - -0.3 618,589 - -1.9 618,589 - -1.0 618,589 - -0.3 618,589 - -0.2 618,589 - -0.3 618,589 - -0.6 618,589 - -0.3 618,589 - -0.4 618,589 - +0.8 618,589 - +0.4 618,589 - +1.1 618,589 - -0.9 618,589 - +0.4 618,589 - -0.2 618,589 - -0.7 618,589 - -0.2 618,589 - -0.7 618,589 - +1.1 618,589 - -1.0 618,589 - -1.3 618,589 - +1.5 618,589 - +0.3 618,589 - -0.2 618,589 - +0.5 618,727 + GFF573 0.15 -0.2 618,727 + GFF573 0.15 -0.1 618,747 + GFF573 0.17 +0.8 618,747 + GFF573 0.17 +0.4 618,747 + GFF573 0.17 +0.1 618,747 + GFF573 0.17 -0.0 618,747 + GFF573 0.17 +0.4 618,747 + GFF573 0.17 -0.3 618,747 + GFF573 0.17 +1.1 618,747 + GFF573 0.17 -0.5 618,747 + GFF573 0.17 +0.1 618,747 + GFF573 0.17 -0.4 618,747 + GFF573 0.17 +0.5 618,747 + GFF573 0.17 -0.6 618,748 - GFF573 0.17 +0.0 618,748 - GFF573 0.17 -0.4 618,748 - GFF573 0.17 -1.2 618,748 - GFF573 0.17 -0.7 618,748 - GFF573 0.17 -0.5 618,748 - GFF573 0.17 -0.4 618,748 - GFF573 0.17 -1.2 618,798 + GFF573 0.21 -0.5 618,798 + GFF573 0.21 -0.4 618,798 + GFF573 0.21 -0.5 618,930 + GFF573 0.32 +0.5 618,930 + GFF573 0.32 +0.4 618,930 + GFF573 0.32 +0.8 618,931 - GFF573 0.32 -0.5 618,931 - GFF573 0.32 -0.3 618,931 - GFF573 0.32 +0.3
Or see this region's nucleotide sequence