Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5704 and GFF5705 are separated by 231 nucleotides GFF5705 and GFF5706 are separated by 3 nucleotides GFF5706 and GFF5707 are separated by 146 nucleotides
GFF5704 - Seryl-tRNA synthetase (EC 6.1.1.11), at 77,893 to 79,224
GFF5704
GFF5705 - Transcriptional regulator, AcrR family, at 79,456 to 80,031
GFF5705
GFF5706 - no description, at 80,035 to 80,187
GFF5706
GFF5707 - Transcriptional regulator, LysR family, at 80,334 to 81,191
GFF5707
Position (kb) 79
80
81 Strain fitness (log2 ratio) -2
-1
0
1
2 at 79.242 kb on + strand at 79.444 kb on + strand at 79.444 kb on + strand at 79.444 kb on + strand at 79.444 kb on + strand at 79.444 kb on + strand at 79.445 kb on - strand at 79.445 kb on - strand at 79.445 kb on - strand at 79.445 kb on - strand at 79.482 kb on - strand at 79.482 kb on - strand at 79.539 kb on + strand, within GFF5705 at 79.539 kb on + strand, within GFF5705 at 79.539 kb on + strand, within GFF5705 at 79.539 kb on + strand, within GFF5705 at 79.539 kb on + strand, within GFF5705 at 79.539 kb on + strand, within GFF5705 at 79.539 kb on + strand, within GFF5705 at 79.540 kb on - strand, within GFF5705 at 79.540 kb on - strand, within GFF5705 at 79.540 kb on - strand, within GFF5705 at 79.540 kb on - strand, within GFF5705 at 79.540 kb on - strand, within GFF5705 at 79.540 kb on - strand, within GFF5705 at 79.573 kb on + strand, within GFF5705 at 79.573 kb on + strand, within GFF5705 at 79.573 kb on + strand, within GFF5705 at 79.574 kb on - strand, within GFF5705 at 79.574 kb on - strand, within GFF5705 at 79.601 kb on - strand, within GFF5705 at 79.621 kb on + strand, within GFF5705 at 79.621 kb on + strand, within GFF5705 at 79.621 kb on + strand, within GFF5705 at 79.621 kb on + strand, within GFF5705 at 79.621 kb on + strand, within GFF5705 at 79.622 kb on - strand, within GFF5705 at 79.622 kb on - strand, within GFF5705 at 79.622 kb on - strand, within GFF5705 at 79.622 kb on - strand, within GFF5705 at 79.622 kb on - strand, within GFF5705 at 79.622 kb on - strand, within GFF5705 at 79.834 kb on + strand, within GFF5705 at 79.835 kb on - strand, within GFF5705 at 79.835 kb on - strand, within GFF5705 at 79.835 kb on - strand, within GFF5705 at 80.144 kb on + strand, within GFF5706 at 80.144 kb on + strand, within GFF5706 at 80.144 kb on + strand, within GFF5706 at 80.144 kb on - strand, within GFF5706 at 80.145 kb on - strand, within GFF5706 at 80.145 kb on - strand, within GFF5706 at 80.153 kb on + strand, within GFF5706 at 80.269 kb on - strand at 80.328 kb on + strand at 80.328 kb on + strand at 80.328 kb on + strand at 80.329 kb on - strand at 80.329 kb on - strand at 80.329 kb on - strand at 80.560 kb on + strand, within GFF5707 at 80.826 kb on + strand, within GFF5707 at 80.864 kb on - strand, within GFF5707
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 79,242 + -0.1 79,444 + -1.3 79,444 + -0.6 79,444 + -0.8 79,444 + +1.1 79,444 + +0.9 79,445 - +1.3 79,445 - +0.3 79,445 - -1.1 79,445 - -0.0 79,482 - -0.5 79,482 - +0.3 79,539 + GFF5705 0.14 +0.6 79,539 + GFF5705 0.14 -0.4 79,539 + GFF5705 0.14 +0.1 79,539 + GFF5705 0.14 -1.0 79,539 + GFF5705 0.14 +0.4 79,539 + GFF5705 0.14 -0.1 79,539 + GFF5705 0.14 -0.5 79,540 - GFF5705 0.15 -0.2 79,540 - GFF5705 0.15 -0.5 79,540 - GFF5705 0.15 -0.3 79,540 - GFF5705 0.15 +0.3 79,540 - GFF5705 0.15 +0.5 79,540 - GFF5705 0.15 -0.3 79,573 + GFF5705 0.20 -0.2 79,573 + GFF5705 0.20 +0.3 79,573 + GFF5705 0.20 -0.8 79,574 - GFF5705 0.20 -0.7 79,574 - GFF5705 0.20 +0.1 79,601 - GFF5705 0.25 -0.1 79,621 + GFF5705 0.29 +0.1 79,621 + GFF5705 0.29 -0.6 79,621 + GFF5705 0.29 -1.1 79,621 + GFF5705 0.29 -0.0 79,621 + GFF5705 0.29 -0.2 79,622 - GFF5705 0.29 +0.3 79,622 - GFF5705 0.29 +0.1 79,622 - GFF5705 0.29 -0.1 79,622 - GFF5705 0.29 -0.4 79,622 - GFF5705 0.29 +0.2 79,622 - GFF5705 0.29 +0.2 79,834 + GFF5705 0.66 -0.3 79,835 - GFF5705 0.66 +0.6 79,835 - GFF5705 0.66 +0.3 79,835 - GFF5705 0.66 +0.5 80,144 + GFF5706 0.71 -0.6 80,144 + GFF5706 0.71 +0.9 80,144 + GFF5706 0.71 -0.7 80,144 - GFF5706 0.71 -0.8 80,145 - GFF5706 0.72 -0.1 80,145 - GFF5706 0.72 +1.3 80,153 + GFF5706 0.77 +0.6 80,269 - -0.6 80,328 + +0.9 80,328 + -0.5 80,328 + +1.9 80,329 - -0.4 80,329 - -1.8 80,329 - +0.4 80,560 + GFF5707 0.26 -0.7 80,826 + GFF5707 0.57 +0.2 80,864 - GFF5707 0.62 -0.6
Or see this region's nucleotide sequence