Strain Fitness in Variovorax sp. SCN45 around GFF5668

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5667 and GFF5668 are separated by 111 nucleotidesGFF5668 and GFF5669 overlap by 4 nucleotidesGFF5669 and GFF5670 overlap by 4 nucleotidesGFF5670 and GFF5671 are separated by 10 nucleotides GFF5667 - Transcriptional regulator, LysR family, at 42,889 to 43,779 GFF5667 GFF5668 - Uncharacterized MFS-type transporter, at 43,891 to 45,402 GFF5668 GFF5669 - hypothetical protein, at 45,399 to 45,677 GFF5669 GFF5670 - Protein SlyX, at 45,674 to 45,865 GFF5670 GFF5671 - FIG01964566: Predicted membrane protein, hemolysin III homolog, at 45,876 to 46,562 GFF5671 Position (kb) 43 44 45 46Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 42.891 kb on - strandat 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.076 kb on + strand, within GFF5667at 43.077 kb on - strand, within GFF5667at 43.077 kb on - strand, within GFF5667at 43.077 kb on - strand, within GFF5667at 43.077 kb on - strand, within GFF5667at 43.077 kb on - strand, within GFF5667at 43.077 kb on - strand, within GFF5667at 43.077 kb on - strand, within GFF5667at 43.077 kb on - strand, within GFF5667at 43.077 kb on - strand, within GFF5667at 43.077 kb on - strand, within GFF5667at 43.077 kb on - strand, within GFF5667at 43.077 kb on - strand, within GFF5667at 43.208 kb on + strand, within GFF5667at 43.208 kb on + strand, within GFF5667at 43.208 kb on + strand, within GFF5667at 43.208 kb on + strand, within GFF5667at 43.209 kb on - strand, within GFF5667at 43.271 kb on + strand, within GFF5667at 43.272 kb on - strand, within GFF5667at 43.272 kb on - strand, within GFF5667at 43.272 kb on - strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.366 kb on + strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.367 kb on - strand, within GFF5667at 43.430 kb on + strand, within GFF5667at 43.828 kb on + strandat 43.847 kb on + strandat 43.847 kb on + strandat 43.847 kb on + strandat 43.848 kb on - strandat 43.894 kb on + strandat 43.894 kb on + strandat 43.894 kb on + strandat 43.894 kb on + strandat 43.894 kb on + strandat 43.894 kb on + strandat 43.894 kb on + strandat 43.894 kb on + strandat 43.895 kb on - strandat 43.895 kb on - strandat 44.104 kb on + strand, within GFF5668at 44.104 kb on + strand, within GFF5668at 44.104 kb on + strand, within GFF5668at 44.104 kb on + strand, within GFF5668at 44.104 kb on + strand, within GFF5668at 44.105 kb on - strand, within GFF5668at 44.105 kb on - strand, within GFF5668at 44.105 kb on - strand, within GFF5668at 44.105 kb on - strand, within GFF5668at 44.105 kb on - strand, within GFF5668at 44.716 kb on + strand, within GFF5668at 44.716 kb on + strand, within GFF5668at 44.716 kb on + strand, within GFF5668at 44.716 kb on + strand, within GFF5668at 44.717 kb on - strand, within GFF5668at 44.717 kb on - strand, within GFF5668at 44.717 kb on - strand, within GFF5668at 44.717 kb on - strand, within GFF5668at 44.717 kb on - strand, within GFF5668at 45.265 kb on + strandat 45.265 kb on + strandat 45.265 kb on + strandat 45.265 kb on + strandat 45.266 kb on - strandat 45.266 kb on - strandat 45.266 kb on - strandat 45.266 kb on - strandat 45.266 kb on - strandat 45.266 kb on - strandat 45.354 kb on + strandat 45.355 kb on - strandat 45.355 kb on - strandat 45.590 kb on - strand, within GFF5669at 45.701 kb on + strand, within GFF5670at 45.702 kb on - strand, within GFF5670at 45.740 kb on + strand, within GFF5670at 45.740 kb on + strand, within GFF5670at 45.740 kb on + strand, within GFF5670at 45.740 kb on + strand, within GFF5670at 45.740 kb on + strand, within GFF5670at 45.741 kb on - strand, within GFF5670at 45.741 kb on - strand, within GFF5670at 45.741 kb on - strand, within GFF5670at 45.741 kb on - strand, within GFF5670at 45.741 kb on - strand, within GFF5670at 45.849 kb on + strandat 45.849 kb on + strandat 45.849 kb on + strandat 45.850 kb on - strandat 45.850 kb on - strandat 45.860 kb on + strandat 45.860 kb on + strandat 45.860 kb on + strandat 45.861 kb on - strandat 45.861 kb on - strandat 45.861 kb on - strandat 45.861 kb on - strandat 45.959 kb on - strand, within GFF5671at 45.959 kb on - strand, within GFF5671at 45.959 kb on - strand, within GFF5671at 45.959 kb on - strand, within GFF5671at 45.959 kb on - strand, within GFF5671at 45.959 kb on - strand, within GFF5671at 45.984 kb on + strand, within GFF5671at 45.984 kb on + strand, within GFF5671at 45.984 kb on + strand, within GFF5671at 45.984 kb on + strand, within GFF5671at 45.984 kb on + strand, within GFF5671at 45.985 kb on - strand, within GFF5671at 45.985 kb on - strand, within GFF5671at 45.985 kb on - strand, within GFF5671at 45.985 kb on - strand, within GFF5671at 46.001 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.003 kb on + strand, within GFF5671at 46.004 kb on - strand, within GFF5671at 46.004 kb on - strand, within GFF5671at 46.004 kb on - strand, within GFF5671at 46.004 kb on - strand, within GFF5671at 46.004 kb on - strand, within GFF5671at 46.004 kb on - strand, within GFF5671at 46.004 kb on - strand, within GFF5671at 46.004 kb on - strand, within GFF5671at 46.004 kb on - strand, within GFF5671at 46.057 kb on + strand, within GFF5671at 46.057 kb on + strand, within GFF5671at 46.057 kb on + strand, within GFF5671at 46.057 kb on + strand, within GFF5671at 46.058 kb on - strand, within GFF5671at 46.058 kb on - strand, within GFF5671at 46.102 kb on + strand, within GFF5671at 46.102 kb on + strand, within GFF5671at 46.102 kb on + strand, within GFF5671at 46.102 kb on + strand, within GFF5671at 46.102 kb on + strand, within GFF5671at 46.102 kb on + strand, within GFF5671at 46.102 kb on + strand, within GFF5671at 46.103 kb on - strand, within GFF5671at 46.103 kb on - strand, within GFF5671at 46.103 kb on - strand, within GFF5671at 46.103 kb on - strand, within GFF5671at 46.103 kb on - strand, within GFF5671at 46.103 kb on - strand, within GFF5671at 46.103 kb on - strand, within GFF5671at 46.103 kb on - strand, within GFF5671at 46.103 kb on - strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.240 kb on + strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.241 kb on - strand, within GFF5671at 46.261 kb on + strand, within GFF5671at 46.261 kb on + strand, within GFF5671at 46.261 kb on + strand, within GFF5671at 46.261 kb on + strand, within GFF5671at 46.261 kb on + strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.262 kb on - strand, within GFF5671at 46.324 kb on + strand, within GFF5671at 46.324 kb on + strand, within GFF5671at 46.324 kb on + strand, within GFF5671at 46.325 kb on - strand, within GFF5671at 46.325 kb on - strand, within GFF5671at 46.325 kb on - strand, within GFF5671at 46.325 kb on - strand, within GFF5671at 46.342 kb on + strand, within GFF5671at 46.342 kb on + strand, within GFF5671at 46.342 kb on + strand, within GFF5671at 46.342 kb on + strand, within GFF5671at 46.342 kb on + strand, within GFF5671at 46.343 kb on - strand, within GFF5671at 46.343 kb on - strand, within GFF5671at 46.343 kb on - strand, within GFF5671at 46.343 kb on - strand, within GFF5671

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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42,891 - +0.9
43,076 + GFF5667 0.21 +0.4
43,076 + GFF5667 0.21 +0.6
43,076 + GFF5667 0.21 -0.7
43,076 + GFF5667 0.21 -1.1
43,076 + GFF5667 0.21 +1.0
43,076 + GFF5667 0.21 -0.1
43,076 + GFF5667 0.21 -0.1
43,076 + GFF5667 0.21 +0.1
43,076 + GFF5667 0.21 +0.7
43,076 + GFF5667 0.21 -0.5
43,076 + GFF5667 0.21 +1.2
43,076 + GFF5667 0.21 -0.7
43,076 + GFF5667 0.21 -0.3
43,076 + GFF5667 0.21 -0.5
43,076 + GFF5667 0.21 -0.0
43,076 + GFF5667 0.21 +0.3
43,077 - GFF5667 0.21 -0.1
43,077 - GFF5667 0.21 +0.6
43,077 - GFF5667 0.21 +1.9
43,077 - GFF5667 0.21 +0.2
43,077 - GFF5667 0.21 -1.0
43,077 - GFF5667 0.21 -0.1
43,077 - GFF5667 0.21 -0.3
43,077 - GFF5667 0.21 -0.1
43,077 - GFF5667 0.21 +0.0
43,077 - GFF5667 0.21 +0.5
43,077 - GFF5667 0.21 +0.2
43,077 - GFF5667 0.21 +0.3
43,208 + GFF5667 0.36 +0.0
43,208 + GFF5667 0.36 -1.0
43,208 + GFF5667 0.36 +1.9
43,208 + GFF5667 0.36 -0.5
43,209 - GFF5667 0.36 -0.1
43,271 + GFF5667 0.43 -0.4
43,272 - GFF5667 0.43 +0.4
43,272 - GFF5667 0.43 +0.1
43,272 - GFF5667 0.43 +1.9
43,366 + GFF5667 0.54 +1.3
43,366 + GFF5667 0.54 -0.8
43,366 + GFF5667 0.54 -0.5
43,366 + GFF5667 0.54 -1.0
43,366 + GFF5667 0.54 +0.1
43,366 + GFF5667 0.54 +0.6
43,366 + GFF5667 0.54 -1.7
43,366 + GFF5667 0.54 -0.4
43,366 + GFF5667 0.54 -2.1
43,366 + GFF5667 0.54 -0.2
43,366 + GFF5667 0.54 -1.0
43,366 + GFF5667 0.54 -0.1
43,366 + GFF5667 0.54 +0.2
43,366 + GFF5667 0.54 -0.9
43,366 + GFF5667 0.54 +0.3
43,366 + GFF5667 0.54 -0.0
43,366 + GFF5667 0.54 -0.3
43,366 + GFF5667 0.54 -1.6
43,366 + GFF5667 0.54 +0.1
43,367 - GFF5667 0.54 +0.0
43,367 - GFF5667 0.54 -0.1
43,367 - GFF5667 0.54 -0.0
43,367 - GFF5667 0.54 -0.3
43,367 - GFF5667 0.54 +1.1
43,367 - GFF5667 0.54 -0.8
43,367 - GFF5667 0.54 -0.3
43,367 - GFF5667 0.54 -0.7
43,367 - GFF5667 0.54 +0.0
43,367 - GFF5667 0.54 -0.6
43,367 - GFF5667 0.54 -0.4
43,367 - GFF5667 0.54 +0.9
43,367 - GFF5667 0.54 +0.1
43,367 - GFF5667 0.54 +0.1
43,367 - GFF5667 0.54 -1.0
43,430 + GFF5667 0.61 +1.4
43,828 + -0.6
43,847 + +0.3
43,847 + -0.3
43,847 + -0.1
43,848 - -0.3
43,894 + -0.0
43,894 + -0.1
43,894 + +0.2
43,894 + -0.4
43,894 + +1.3
43,894 + +0.1
43,894 + -1.0
43,894 + +1.0
43,895 - -0.4
43,895 - +0.5
44,104 + GFF5668 0.14 +1.2
44,104 + GFF5668 0.14 +0.0
44,104 + GFF5668 0.14 +0.1
44,104 + GFF5668 0.14 +0.1
44,104 + GFF5668 0.14 +0.7
44,105 - GFF5668 0.14 -0.1
44,105 - GFF5668 0.14 -0.4
44,105 - GFF5668 0.14 +0.5
44,105 - GFF5668 0.14 +0.2
44,105 - GFF5668 0.14 +0.7
44,716 + GFF5668 0.55 +0.9
44,716 + GFF5668 0.55 -1.0
44,716 + GFF5668 0.55 +0.5
44,716 + GFF5668 0.55 -1.0
44,717 - GFF5668 0.55 +0.4
44,717 - GFF5668 0.55 -0.6
44,717 - GFF5668 0.55 +0.6
44,717 - GFF5668 0.55 -0.1
44,717 - GFF5668 0.55 +0.1
45,265 + +0.9
45,265 + +1.1
45,265 + -0.7
45,265 + -2.4
45,266 - +0.4
45,266 - -0.5
45,266 - -0.2
45,266 - -0.6
45,266 - -0.1
45,266 - +0.5
45,354 + -1.1
45,355 - -0.1
45,355 - -1.7
45,590 - GFF5669 0.68 -0.5
45,701 + GFF5670 0.14 -0.2
45,702 - GFF5670 0.15 -1.3
45,740 + GFF5670 0.34 -1.5
45,740 + GFF5670 0.34 -1.1
45,740 + GFF5670 0.34 +0.0
45,740 + GFF5670 0.34 -3.1
45,740 + GFF5670 0.34 -0.8
45,741 - GFF5670 0.35 +0.5
45,741 - GFF5670 0.35 +0.9
45,741 - GFF5670 0.35 -0.9
45,741 - GFF5670 0.35 +0.7
45,741 - GFF5670 0.35 +0.3
45,849 + -0.4
45,849 + -1.3
45,849 + -0.1
45,850 - +0.7
45,850 - -0.9
45,860 + +1.1
45,860 + +0.9
45,860 + +1.3
45,861 - -0.8
45,861 - +2.4
45,861 - -0.6
45,861 - -0.0
45,959 - GFF5671 0.12 -0.4
45,959 - GFF5671 0.12 -1.5
45,959 - GFF5671 0.12 -1.0
45,959 - GFF5671 0.12 +0.3
45,959 - GFF5671 0.12 +4.0
45,959 - GFF5671 0.12 -0.6
45,984 + GFF5671 0.16 +0.1
45,984 + GFF5671 0.16 -0.3
45,984 + GFF5671 0.16 -1.7
45,984 + GFF5671 0.16 +0.5
45,984 + GFF5671 0.16 +0.9
45,985 - GFF5671 0.16 -0.8
45,985 - GFF5671 0.16 +0.4
45,985 - GFF5671 0.16 +1.4
45,985 - GFF5671 0.16 -0.3
46,001 + GFF5671 0.18 +0.5
46,003 + GFF5671 0.18 -0.8
46,003 + GFF5671 0.18 -0.3
46,003 + GFF5671 0.18 +0.1
46,003 + GFF5671 0.18 -0.3
46,003 + GFF5671 0.18 -0.3
46,003 + GFF5671 0.18 -0.6
46,003 + GFF5671 0.18 +0.2
46,003 + GFF5671 0.18 -0.1
46,003 + GFF5671 0.18 -1.6
46,003 + GFF5671 0.18 -0.5
46,003 + GFF5671 0.18 +0.9
46,003 + GFF5671 0.18 -1.2
46,004 - GFF5671 0.19 -0.4
46,004 - GFF5671 0.19 +1.1
46,004 - GFF5671 0.19 +0.9
46,004 - GFF5671 0.19 -0.1
46,004 - GFF5671 0.19 -0.6
46,004 - GFF5671 0.19 -1.5
46,004 - GFF5671 0.19 +0.5
46,004 - GFF5671 0.19 +3.4
46,004 - GFF5671 0.19 -0.7
46,057 + GFF5671 0.26 -0.9
46,057 + GFF5671 0.26 +0.4
46,057 + GFF5671 0.26 +0.3
46,057 + GFF5671 0.26 -0.9
46,058 - GFF5671 0.26 -0.9
46,058 - GFF5671 0.26 +1.9
46,102 + GFF5671 0.33 -0.7
46,102 + GFF5671 0.33 -0.2
46,102 + GFF5671 0.33 +1.3
46,102 + GFF5671 0.33 -0.5
46,102 + GFF5671 0.33 -2.0
46,102 + GFF5671 0.33 +0.5
46,102 + GFF5671 0.33 +0.3
46,103 - GFF5671 0.33 +0.4
46,103 - GFF5671 0.33 +0.3
46,103 - GFF5671 0.33 +1.9
46,103 - GFF5671 0.33 -0.7
46,103 - GFF5671 0.33 -0.2
46,103 - GFF5671 0.33 -0.5
46,103 - GFF5671 0.33 +0.1
46,103 - GFF5671 0.33 -0.5
46,103 - GFF5671 0.33 +0.9
46,240 + GFF5671 0.53 -0.4
46,240 + GFF5671 0.53 -0.6
46,240 + GFF5671 0.53 -0.3
46,240 + GFF5671 0.53 -0.2
46,240 + GFF5671 0.53 -0.2
46,240 + GFF5671 0.53 -0.1
46,240 + GFF5671 0.53 -0.7
46,240 + GFF5671 0.53 +0.2
46,240 + GFF5671 0.53 -0.3
46,240 + GFF5671 0.53 +1.5
46,240 + GFF5671 0.53 +1.9
46,241 - GFF5671 0.53 +0.7
46,241 - GFF5671 0.53 -0.2
46,241 - GFF5671 0.53 +0.5
46,241 - GFF5671 0.53 -0.3
46,241 - GFF5671 0.53 -1.4
46,241 - GFF5671 0.53 -0.1
46,241 - GFF5671 0.53 +0.1
46,241 - GFF5671 0.53 -2.0
46,241 - GFF5671 0.53 +0.3
46,241 - GFF5671 0.53 +0.0
46,261 + GFF5671 0.56 +0.0
46,261 + GFF5671 0.56 +0.1
46,261 + GFF5671 0.56 -0.0
46,261 + GFF5671 0.56 -0.6
46,261 + GFF5671 0.56 +0.4
46,262 - GFF5671 0.56 +0.3
46,262 - GFF5671 0.56 -0.1
46,262 - GFF5671 0.56 -0.9
46,262 - GFF5671 0.56 +0.4
46,262 - GFF5671 0.56 -1.2
46,262 - GFF5671 0.56 +0.6
46,262 - GFF5671 0.56 -1.3
46,262 - GFF5671 0.56 -0.2
46,262 - GFF5671 0.56 -0.3
46,324 + GFF5671 0.65 -0.7
46,324 + GFF5671 0.65 -0.3
46,324 + GFF5671 0.65 -0.7
46,325 - GFF5671 0.65 +0.2
46,325 - GFF5671 0.65 +1.3
46,325 - GFF5671 0.65 +0.0
46,325 - GFF5671 0.65 +0.3
46,342 + GFF5671 0.68 +0.4
46,342 + GFF5671 0.68 -1.0
46,342 + GFF5671 0.68 -0.2
46,342 + GFF5671 0.68 +0.0
46,342 + GFF5671 0.68 -1.5
46,343 - GFF5671 0.68 -0.6
46,343 - GFF5671 0.68 -0.0
46,343 - GFF5671 0.68 -0.7
46,343 - GFF5671 0.68 -0.1

Or see this region's nucleotide sequence