Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5610 and GFF5611 are separated by 82 nucleotides GFF5611 and GFF5612 are separated by 230 nucleotides
GFF5610 - hypothetical protein, at 230,758 to 232,878
GFF5610
GFF5611 - BUG/TctC family periplasmic protein, at 232,961 to 233,935
GFF5611
GFF5612 - Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16), at 234,166 to 235,629
GFF5612
Position (kb) 232
233
234 Strain fitness (log2 ratio) -1
0
1
2
3 at 231.961 kb on + strand, within GFF5610 at 232.000 kb on + strand, within GFF5610 at 232.000 kb on + strand, within GFF5610 at 232.001 kb on - strand, within GFF5610 at 232.001 kb on - strand, within GFF5610 at 232.024 kb on + strand, within GFF5610 at 232.024 kb on + strand, within GFF5610 at 232.025 kb on - strand, within GFF5610 at 232.025 kb on - strand, within GFF5610 at 232.393 kb on + strand, within GFF5610 at 232.393 kb on + strand, within GFF5610 at 232.394 kb on - strand, within GFF5610 at 232.394 kb on - strand, within GFF5610 at 232.394 kb on - strand, within GFF5610 at 232.394 kb on - strand, within GFF5610 at 232.394 kb on - strand, within GFF5610 at 232.711 kb on + strand at 232.711 kb on + strand at 232.711 kb on + strand at 232.712 kb on - strand at 232.771 kb on + strand at 232.771 kb on + strand at 232.777 kb on + strand at 232.971 kb on + strand at 232.972 kb on - strand at 233.178 kb on + strand, within GFF5611 at 233.178 kb on + strand, within GFF5611 at 233.179 kb on - strand, within GFF5611 at 233.179 kb on - strand, within GFF5611 at 233.179 kb on - strand, within GFF5611 at 233.286 kb on + strand, within GFF5611 at 233.287 kb on - strand, within GFF5611 at 233.398 kb on - strand, within GFF5611 at 233.532 kb on + strand, within GFF5611 at 233.532 kb on + strand, within GFF5611 at 233.532 kb on + strand, within GFF5611 at 233.533 kb on - strand, within GFF5611 at 233.533 kb on - strand, within GFF5611 at 233.686 kb on - strand, within GFF5611 at 233.970 kb on + strand at 233.971 kb on - strand at 233.993 kb on + strand at 233.993 kb on + strand at 233.993 kb on + strand at 233.993 kb on + strand at 233.993 kb on + strand at 233.993 kb on + strand at 233.993 kb on + strand at 233.994 kb on - strand at 233.994 kb on - strand at 233.994 kb on - strand at 233.994 kb on - strand at 233.996 kb on - strand at 234.002 kb on + strand at 234.002 kb on + strand at 234.003 kb on - strand at 234.211 kb on + strand at 234.211 kb on + strand at 234.212 kb on - strand at 234.503 kb on - strand, within GFF5612 at 234.503 kb on - strand, within GFF5612 at 234.503 kb on - strand, within GFF5612 at 234.550 kb on + strand, within GFF5612 at 234.550 kb on + strand, within GFF5612 at 234.551 kb on - strand, within GFF5612 at 234.551 kb on - strand, within GFF5612
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 231,961 + GFF5610 0.57 -0.4 232,000 + GFF5610 0.59 +0.2 232,000 + GFF5610 0.59 -0.3 232,001 - GFF5610 0.59 +0.0 232,001 - GFF5610 0.59 -1.0 232,024 + GFF5610 0.60 +0.5 232,024 + GFF5610 0.60 +0.5 232,025 - GFF5610 0.60 -0.5 232,025 - GFF5610 0.60 +0.5 232,393 + GFF5610 0.77 -0.6 232,393 + GFF5610 0.77 -0.1 232,394 - GFF5610 0.77 -0.4 232,394 - GFF5610 0.77 +0.5 232,394 - GFF5610 0.77 -0.8 232,394 - GFF5610 0.77 +1.0 232,394 - GFF5610 0.77 -0.1 232,711 + -0.1 232,711 + -0.5 232,711 + -0.1 232,712 - +0.2 232,771 + -0.6 232,771 + +0.3 232,777 + +0.6 232,971 + -1.0 232,972 - -0.5 233,178 + GFF5611 0.22 -0.2 233,178 + GFF5611 0.22 -0.1 233,179 - GFF5611 0.22 +1.0 233,179 - GFF5611 0.22 +0.2 233,179 - GFF5611 0.22 -0.3 233,286 + GFF5611 0.33 +1.8 233,287 - GFF5611 0.33 +0.0 233,398 - GFF5611 0.45 -0.3 233,532 + GFF5611 0.59 -0.0 233,532 + GFF5611 0.59 +0.0 233,532 + GFF5611 0.59 -0.0 233,533 - GFF5611 0.59 +0.0 233,533 - GFF5611 0.59 +0.6 233,686 - GFF5611 0.74 -0.2 233,970 + -0.2 233,971 - -1.1 233,993 + +0.4 233,993 + -0.6 233,993 + -1.1 233,993 + -0.3 233,993 + +0.8 233,993 + -0.4 233,993 + -1.3 233,994 - +0.2 233,994 - -0.5 233,994 - +0.5 233,994 - +3.0 233,996 - +0.2 234,002 + +0.0 234,002 + -0.6 234,003 - -0.8 234,211 + -0.0 234,211 + +0.0 234,212 - -0.1 234,503 - GFF5612 0.23 +0.3 234,503 - GFF5612 0.23 +1.0 234,503 - GFF5612 0.23 +0.5 234,550 + GFF5612 0.26 +0.5 234,550 + GFF5612 0.26 +0.6 234,551 - GFF5612 0.26 +0.5 234,551 - GFF5612 0.26 -0.3
Or see this region's nucleotide sequence