Strain Fitness in Variovorax sp. SCN45 around GFF5581

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5580 and GFF5581 are separated by 11 nucleotidesGFF5581 and GFF5582 are separated by 124 nucleotides GFF5580 - Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79), at 201,463 to 202,743 GFF5580 GFF5581 - SSU ribosomal protein S5p (S2e), at 202,755 to 203,078 GFF5581 GFF5582 - BUG/TctC family periplasmic protein, at 203,203 to 204,231 GFF5582 Position (kb) 202 203 204Strain fitness (log2 ratio) -2 -1 0 1 2at 201.832 kb on + strand, within GFF5580at 201.832 kb on + strand, within GFF5580at 201.832 kb on + strand, within GFF5580at 201.853 kb on + strand, within GFF5580at 201.854 kb on - strand, within GFF5580at 201.854 kb on - strand, within GFF5580at 201.861 kb on - strand, within GFF5580at 201.861 kb on - strand, within GFF5580at 201.883 kb on + strand, within GFF5580at 201.883 kb on + strand, within GFF5580at 201.883 kb on + strand, within GFF5580at 201.883 kb on + strand, within GFF5580at 201.883 kb on + strand, within GFF5580at 201.884 kb on - strand, within GFF5580at 201.884 kb on - strand, within GFF5580at 201.884 kb on - strand, within GFF5580at 201.884 kb on - strand, within GFF5580at 201.895 kb on + strand, within GFF5580at 201.895 kb on + strand, within GFF5580at 201.896 kb on - strand, within GFF5580at 201.896 kb on - strand, within GFF5580at 201.988 kb on + strand, within GFF5580at 201.989 kb on - strand, within GFF5580at 201.989 kb on - strand, within GFF5580at 202.043 kb on - strand, within GFF5580at 202.043 kb on - strand, within GFF5580at 202.154 kb on - strand, within GFF5580at 202.240 kb on + strand, within GFF5580at 202.240 kb on + strand, within GFF5580at 202.241 kb on - strand, within GFF5580at 202.241 kb on - strand, within GFF5580at 202.241 kb on - strand, within GFF5580at 202.241 kb on - strand, within GFF5580at 202.241 kb on - strand, within GFF5580at 202.318 kb on + strand, within GFF5580at 202.318 kb on + strand, within GFF5580at 202.319 kb on - strand, within GFF5580at 202.360 kb on + strand, within GFF5580at 202.360 kb on + strand, within GFF5580at 202.360 kb on + strand, within GFF5580at 202.360 kb on + strand, within GFF5580at 202.360 kb on + strand, within GFF5580at 202.360 kb on + strand, within GFF5580at 202.360 kb on + strand, within GFF5580at 202.360 kb on + strand, within GFF5580at 202.360 kb on + strand, within GFF5580at 202.360 kb on + strand, within GFF5580at 202.360 kb on + strand, within GFF5580at 202.360 kb on + strand, within GFF5580at 202.360 kb on + strand, within GFF5580at 202.361 kb on - strand, within GFF5580at 202.361 kb on - strand, within GFF5580at 202.361 kb on - strand, within GFF5580at 202.361 kb on - strand, within GFF5580at 202.361 kb on - strand, within GFF5580at 202.361 kb on - strand, within GFF5580at 202.361 kb on - strand, within GFF5580at 202.361 kb on - strand, within GFF5580at 202.361 kb on - strand, within GFF5580at 202.462 kb on + strand, within GFF5580at 202.462 kb on + strand, within GFF5580at 202.462 kb on + strand, within GFF5580at 202.462 kb on + strand, within GFF5580at 202.462 kb on + strand, within GFF5580at 202.463 kb on + strand, within GFF5580at 202.463 kb on - strand, within GFF5580at 202.463 kb on - strand, within GFF5580at 202.585 kb on + strand, within GFF5580at 202.594 kb on + strand, within GFF5580at 202.595 kb on - strand, within GFF5580at 202.595 kb on - strand, within GFF5580at 202.711 kb on + strandat 202.711 kb on + strandat 202.712 kb on - strandat 202.712 kb on - strandat 202.729 kb on + strandat 202.729 kb on + strandat 202.729 kb on + strandat 202.729 kb on + strandat 202.729 kb on + strandat 202.729 kb on + strandat 202.729 kb on + strandat 202.729 kb on + strandat 202.729 kb on + strandat 202.729 kb on + strandat 202.729 kb on + strandat 202.729 kb on + strandat 202.729 kb on + strandat 202.730 kb on - strandat 202.730 kb on - strandat 202.730 kb on - strandat 202.730 kb on - strandat 202.730 kb on - strandat 202.730 kb on - strandat 202.730 kb on - strandat 202.730 kb on - strandat 202.730 kb on - strandat 202.730 kb on - strandat 202.730 kb on - strandat 202.730 kb on - strandat 202.735 kb on + strandat 202.735 kb on + strandat 202.735 kb on + strandat 202.735 kb on + strandat 202.735 kb on + strandat 202.735 kb on + strandat 202.735 kb on + strandat 202.735 kb on + strandat 202.735 kb on + strandat 202.735 kb on + strandat 202.735 kb on + strandat 202.735 kb on + strandat 202.735 kb on + strandat 202.735 kb on + strandat 202.736 kb on - strandat 202.736 kb on - strandat 202.736 kb on - strandat 202.736 kb on - strandat 202.736 kb on - strandat 202.736 kb on - strandat 202.736 kb on - strandat 202.736 kb on - strandat 202.741 kb on + strandat 202.741 kb on + strandat 202.741 kb on + strandat 202.741 kb on + strandat 202.741 kb on + strandat 202.741 kb on + strandat 202.741 kb on + strandat 202.741 kb on + strandat 202.742 kb on - strandat 202.742 kb on - strandat 202.742 kb on - strandat 202.742 kb on - strandat 202.742 kb on - strandat 202.742 kb on - strandat 202.742 kb on - strandat 202.742 kb on - strandat 202.761 kb on + strandat 202.761 kb on + strandat 202.762 kb on - strandat 202.950 kb on + strand, within GFF5581at 202.950 kb on + strand, within GFF5581at 202.951 kb on - strand, within GFF5581at 202.993 kb on + strand, within GFF5581at 202.993 kb on + strand, within GFF5581at 202.993 kb on + strand, within GFF5581at 202.993 kb on + strand, within GFF5581at 202.993 kb on + strand, within GFF5581at 202.993 kb on + strand, within GFF5581at 202.993 kb on + strand, within GFF5581at 202.993 kb on + strand, within GFF5581at 202.994 kb on - strand, within GFF5581at 202.994 kb on - strand, within GFF5581at 202.994 kb on - strand, within GFF5581at 202.994 kb on - strand, within GFF5581at 202.994 kb on - strand, within GFF5581at 202.994 kb on - strand, within GFF5581at 202.994 kb on - strand, within GFF5581at 202.994 kb on - strand, within GFF5581at 202.994 kb on - strand, within GFF5581at 202.994 kb on - strand, within GFF5581at 202.994 kb on - strand, within GFF5581at 202.994 kb on - strand, within GFF5581at 202.994 kb on - strand, within GFF5581at 203.205 kb on - strandat 203.205 kb on - strandat 203.633 kb on + strand, within GFF5582at 203.633 kb on + strand, within GFF5582at 203.633 kb on + strand, within GFF5582at 203.634 kb on - strand, within GFF5582at 203.634 kb on - strand, within GFF5582at 203.634 kb on - strand, within GFF5582at 203.634 kb on - strand, within GFF5582at 203.634 kb on - strand, within GFF5582at 203.634 kb on - strand, within GFF5582at 203.634 kb on - strand, within GFF5582at 203.634 kb on - strand, within GFF5582at 203.636 kb on - strand, within GFF5582at 203.750 kb on + strand, within GFF5582at 203.750 kb on + strand, within GFF5582at 203.750 kb on + strand, within GFF5582at 203.751 kb on - strand, within GFF5582at 203.751 kb on - strand, within GFF5582at 203.751 kb on - strand, within GFF5582at 203.841 kb on + strand, within GFF5582at 203.841 kb on + strand, within GFF5582at 203.841 kb on + strand, within GFF5582at 203.842 kb on - strand, within GFF5582at 203.842 kb on - strand, within GFF5582at 203.885 kb on + strand, within GFF5582at 203.885 kb on + strand, within GFF5582at 203.885 kb on + strand, within GFF5582at 203.886 kb on - strand, within GFF5582at 203.886 kb on - strand, within GFF5582at 203.936 kb on + strand, within GFF5582at 203.936 kb on + strand, within GFF5582at 203.937 kb on - strand, within GFF5582at 203.937 kb on - strand, within GFF5582

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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201,832 + GFF5580 0.29 +0.1
201,832 + GFF5580 0.29 -0.0
201,832 + GFF5580 0.29 -0.0
201,853 + GFF5580 0.30 +0.6
201,854 - GFF5580 0.31 -1.2
201,854 - GFF5580 0.31 -0.4
201,861 - GFF5580 0.31 +0.2
201,861 - GFF5580 0.31 +0.8
201,883 + GFF5580 0.33 +0.7
201,883 + GFF5580 0.33 -0.0
201,883 + GFF5580 0.33 +0.2
201,883 + GFF5580 0.33 +0.2
201,883 + GFF5580 0.33 +0.5
201,884 - GFF5580 0.33 -0.7
201,884 - GFF5580 0.33 +0.2
201,884 - GFF5580 0.33 -1.4
201,884 - GFF5580 0.33 +0.2
201,895 + GFF5580 0.34 -0.2
201,895 + GFF5580 0.34 -0.1
201,896 - GFF5580 0.34 +1.0
201,896 - GFF5580 0.34 -0.3
201,988 + GFF5580 0.41 +2.0
201,989 - GFF5580 0.41 -0.1
201,989 - GFF5580 0.41 -0.1
202,043 - GFF5580 0.45 -0.4
202,043 - GFF5580 0.45 +0.1
202,154 - GFF5580 0.54 +1.8
202,240 + GFF5580 0.61 -0.3
202,240 + GFF5580 0.61 -0.1
202,241 - GFF5580 0.61 +0.1
202,241 - GFF5580 0.61 -1.4
202,241 - GFF5580 0.61 -0.5
202,241 - GFF5580 0.61 +0.1
202,241 - GFF5580 0.61 -0.8
202,318 + GFF5580 0.67 +0.2
202,318 + GFF5580 0.67 +0.1
202,319 - GFF5580 0.67 -1.1
202,360 + GFF5580 0.70 +0.6
202,360 + GFF5580 0.70 -0.7
202,360 + GFF5580 0.70 +0.1
202,360 + GFF5580 0.70 -1.1
202,360 + GFF5580 0.70 -0.1
202,360 + GFF5580 0.70 -1.1
202,360 + GFF5580 0.70 -0.1
202,360 + GFF5580 0.70 +0.3
202,360 + GFF5580 0.70 -0.0
202,360 + GFF5580 0.70 +0.5
202,360 + GFF5580 0.70 +0.3
202,360 + GFF5580 0.70 -0.3
202,360 + GFF5580 0.70 -1.0
202,361 - GFF5580 0.70 +0.6
202,361 - GFF5580 0.70 -0.7
202,361 - GFF5580 0.70 +1.5
202,361 - GFF5580 0.70 -1.4
202,361 - GFF5580 0.70 +0.7
202,361 - GFF5580 0.70 +0.0
202,361 - GFF5580 0.70 -0.4
202,361 - GFF5580 0.70 -0.4
202,361 - GFF5580 0.70 -0.6
202,462 + GFF5580 0.78 +0.0
202,462 + GFF5580 0.78 -1.3
202,462 + GFF5580 0.78 +0.5
202,462 + GFF5580 0.78 -1.3
202,462 + GFF5580 0.78 -1.8
202,463 + GFF5580 0.78 +0.5
202,463 - GFF5580 0.78 +0.5
202,463 - GFF5580 0.78 -0.0
202,585 + GFF5580 0.88 +0.5
202,594 + GFF5580 0.88 -0.7
202,595 - GFF5580 0.88 +0.4
202,595 - GFF5580 0.88 -0.9
202,711 + -0.5
202,711 + +0.4
202,712 - +0.3
202,712 - +0.0
202,729 + -0.9
202,729 + -0.8
202,729 + +0.8
202,729 + -0.1
202,729 + -0.4
202,729 + -0.3
202,729 + -1.8
202,729 + +0.5
202,729 + -1.5
202,729 + +0.0
202,729 + -0.9
202,729 + -1.3
202,729 + -2.2
202,730 - -1.9
202,730 - -0.5
202,730 - +0.2
202,730 - -0.9
202,730 - -1.4
202,730 - +0.0
202,730 - +0.6
202,730 - -1.4
202,730 - -0.5
202,730 - -0.2
202,730 - +0.4
202,730 - -1.1
202,735 + -1.4
202,735 + +0.6
202,735 + -0.2
202,735 + -0.0
202,735 + +0.7
202,735 + -0.5
202,735 + -1.7
202,735 + +1.0
202,735 + +0.0
202,735 + -0.2
202,735 + -0.1
202,735 + -0.5
202,735 + -1.0
202,735 + +0.2
202,736 - +0.1
202,736 - -0.8
202,736 - +1.0
202,736 - +0.9
202,736 - -0.2
202,736 - -0.2
202,736 - -0.3
202,736 - -1.3
202,741 + -0.8
202,741 + +1.0
202,741 + +1.2
202,741 + -0.8
202,741 + +0.3
202,741 + +0.7
202,741 + -0.6
202,741 + +0.4
202,742 - +0.9
202,742 - +0.5
202,742 - +0.0
202,742 - -0.7
202,742 - +0.1
202,742 - +0.3
202,742 - +1.0
202,742 - -0.3
202,761 + -1.1
202,761 + -1.8
202,762 - -1.0
202,950 + GFF5581 0.60 -0.0
202,950 + GFF5581 0.60 +0.0
202,951 - GFF5581 0.60 +0.0
202,993 + GFF5581 0.73 -0.3
202,993 + GFF5581 0.73 -0.8
202,993 + GFF5581 0.73 -0.2
202,993 + GFF5581 0.73 -0.0
202,993 + GFF5581 0.73 +0.1
202,993 + GFF5581 0.73 +0.1
202,993 + GFF5581 0.73 +0.2
202,993 + GFF5581 0.73 -1.1
202,994 - GFF5581 0.74 +0.1
202,994 - GFF5581 0.74 -0.3
202,994 - GFF5581 0.74 -0.5
202,994 - GFF5581 0.74 +0.5
202,994 - GFF5581 0.74 +1.3
202,994 - GFF5581 0.74 +0.6
202,994 - GFF5581 0.74 +0.7
202,994 - GFF5581 0.74 +0.9
202,994 - GFF5581 0.74 -0.5
202,994 - GFF5581 0.74 -0.7
202,994 - GFF5581 0.74 -0.8
202,994 - GFF5581 0.74 +1.2
202,994 - GFF5581 0.74 +0.5
203,205 - -1.1
203,205 - -0.1
203,633 + GFF5582 0.42 +0.3
203,633 + GFF5582 0.42 -0.0
203,633 + GFF5582 0.42 +0.1
203,634 - GFF5582 0.42 -0.3
203,634 - GFF5582 0.42 +0.5
203,634 - GFF5582 0.42 +0.2
203,634 - GFF5582 0.42 -0.5
203,634 - GFF5582 0.42 +1.0
203,634 - GFF5582 0.42 -1.6
203,634 - GFF5582 0.42 -1.9
203,634 - GFF5582 0.42 +0.3
203,636 - GFF5582 0.42 -0.4
203,750 + GFF5582 0.53 -0.3
203,750 + GFF5582 0.53 +0.5
203,750 + GFF5582 0.53 +0.3
203,751 - GFF5582 0.53 +0.8
203,751 - GFF5582 0.53 +1.2
203,751 - GFF5582 0.53 -0.3
203,841 + GFF5582 0.62 +0.0
203,841 + GFF5582 0.62 -0.1
203,841 + GFF5582 0.62 -0.7
203,842 - GFF5582 0.62 -0.5
203,842 - GFF5582 0.62 +0.8
203,885 + GFF5582 0.66 +0.5
203,885 + GFF5582 0.66 -0.1
203,885 + GFF5582 0.66 -1.0
203,886 - GFF5582 0.66 +0.6
203,886 - GFF5582 0.66 +0.8
203,936 + GFF5582 0.71 -0.8
203,936 + GFF5582 0.71 -0.0
203,937 - GFF5582 0.71 -0.1
203,937 - GFF5582 0.71 -0.5

Or see this region's nucleotide sequence