Strain Fitness in Variovorax sp. SCN45 around GFF5479

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
107,997	+				-1.2
107,997	+				-0.2
107,997	+				-0.4
107,997	+				-0.7
107,997	+				-0.8
107,997	+				+2.0
107,997	+				+0.8
107,997	+				+2.6
107,997	+				-0.9
107,997	+				+0.7
107,997	+				+0.2
107,997	+				-1.4
107,997	+				-0.4
107,998	-				+0.5
107,998	-				-0.6
107,998	-				-0.1
107,998	-				-0.5
107,998	-				-0.0
107,998	-				+0.8
107,998	-				+0.6
107,998	-				-0.2
107,998	-				+0.0
108,127	+				-0.7
108,127	+				-0.4
108,127	+				-0.0
108,127	+				-0.1
108,127	+				-0.5
108,127	+				-0.3
108,127	+				-0.1
108,127	+				-0.1
108,127	+				-0.2
108,128	-				-0.6
108,128	-				-0.4
108,136	+				+0.1
108,136	+				-0.3
108,136	+				+0.2
108,136	+				-1.1
108,136	+				+2.0
108,136	+				+0.8
108,136	+				+0.9
108,136	+				+0.3
108,136	+				-0.4
108,136	+				-0.1
108,136	+				+0.9
108,136	+				+0.5
108,136	+				+0.5
108,136	+				-0.9
108,136	+				+0.0
108,136	+				-0.3
108,136	+				+1.0
108,136	+				-0.3
108,137	-				+0.5
108,137	-				+0.2
108,137	-				-0.3
108,137	-				-0.7
108,137	-				+1.0
108,137	-				+0.2
108,137	-				-0.3
108,137	-				-0.6
108,137	-				-0.1
108,137	-				-0.8
108,137	-				-0.0
108,137	-				+0.1
108,137	-				-0.3
108,137	-				-0.1
108,137	-				-0.2
108,137	-				-0.1
108,137	-				-1.6
108,140	+				-1.4
108,140	+				+1.0
108,140	+				+1.0
108,140	+				+0.1
108,140	+				+1.0
108,140	+				-0.5
108,140	+				-0.9
108,140	+				-0.8
108,140	+				-0.3
108,140	+				+0.3
108,140	+				-1.5
108,141	-				-0.1
108,141	-				+0.3
108,141	-				+0.1
108,141	-				-0.4
108,141	-				-0.4
108,141	-				-0.4
108,141	-				-0.2
108,141	-				+1.2
108,141	-				-0.6
108,141	-				-1.1
108,141	-				-1.5
108,141	-				+0.2
108,141	-				+0.4
108,141	-				-0.0
108,146	+				-0.2
108,146	+				+0.1
108,146	+				-0.4
108,146	+				+1.4
108,146	+				-0.5
108,146	+				+0.5
108,147	-				-0.3
108,147	-				-1.1
108,180	+				+1.0
108,180	+				-0.6
108,180	+				-0.2
108,180	+				-0.2
108,180	+				+0.3
108,180	+				-2.4
108,180	+				-0.1
108,180	+				+0.7
108,180	+				+0.6
108,180	+				+0.1
108,180	+				-0.8
108,180	+				-0.5
108,180	+				+0.6
108,180	+				-0.7
108,180	+				-0.3
108,180	+				-0.9
108,180	+				+0.4
108,180	+				-0.7
108,180	+				-0.3
108,180	+				+0.1
108,180	+				-0.4
108,180	+				-0.3
108,180	+				-0.8
108,181	-				-0.2
108,181	-				+0.3
108,181	-				-0.3
108,181	-				-0.8
108,181	-				+0.8
108,181	-				+0.1
108,181	-				-1.4
108,181	-				-0.9
108,181	-				+0.0
108,181	-				-0.3
108,181	-				-0.9
108,181	-				-0.4
108,181	-				-0.6
108,181	-				-0.6
108,181	-				-0.7
108,181	-				+1.7
108,181	-				+1.0
108,181	-				+0.7
108,580	+		GFF5478	0.63	-1.5
108,580	+		GFF5478	0.63	-0.4
108,581	-		GFF5478	0.63	-0.0
108,581	-		GFF5478	0.63	+0.2
108,581	-		GFF5478	0.63	+0.2
108,581	-		GFF5478	0.63	+1.0
108,581	-		GFF5478	0.63	-0.2
108,581	-		GFF5478	0.63	-0.5
108,883	+				+0.3
108,883	+				-0.2
108,883	+				+0.0
108,883	+				+0.1
108,883	+				+0.1
108,883	+				-0.2
108,883	+				+0.1
108,883	+				-0.5
108,884	-				-0.4
108,884	-				-0.0
108,884	-				-0.9
108,884	-				+0.5
108,884	-				-1.6
109,066	+		GFF5479	0.35	-2.1
109,066	+		GFF5479	0.35	-0.1
109,066	+		GFF5479	0.35	+0.8
109,066	+		GFF5479	0.35	-0.3
109,067	-		GFF5479	0.36	+0.0
109,067	-		GFF5479	0.36	-0.3
109,067	-		GFF5479	0.36	-0.6
109,067	-		GFF5479	0.36	+0.5
109,067	-		GFF5479	0.36	-0.3
109,186	+		GFF5479	0.57	+0.6
109,187	-		GFF5479	0.58	-0.8
109,187	-		GFF5479	0.58	+0.5
109,187	-		GFF5479	0.58	-0.2
109,187	-		GFF5479	0.58	-0.1
109,187	-		GFF5479	0.58	-1.0
109,279	+		GFF5479	0.75	+0.6
109,279	+		GFF5479	0.75	-0.3
109,279	+		GFF5479	0.75	-2.1
109,279	+		GFF5479	0.75	-0.6
109,279	+		GFF5479	0.75	-0.5
109,279	+		GFF5479	0.75	-0.7
109,279	+		GFF5479	0.75	-0.6
109,279	+		GFF5479	0.75	-0.3
109,280	-		GFF5479	0.75	-0.2
109,280	-		GFF5479	0.75	-0.7
109,280	-		GFF5479	0.75	-0.2
109,280	-		GFF5479	0.75	-0.5
109,280	-		GFF5479	0.75	+0.2
109,755	+		GFF5480	0.83	+0.1
109,755	+		GFF5480	0.83	+0.3
109,755	+		GFF5480	0.83	-0.7
109,755	+		GFF5480	0.83	-0.6
109,755	+		GFF5480	0.83	+0.5
109,755	+		GFF5480	0.83	+0.0
109,755	+		GFF5480	0.83	+0.0
109,755	+		GFF5480	0.83	+0.1
109,756	-		GFF5480	0.83	-0.8
109,756	-		GFF5480	0.83	+0.0
109,756	-		GFF5480	0.83	-0.2
109,756	-		GFF5480	0.83	-0.2
109,756	-		GFF5480	0.83	+1.5
109,756	-		GFF5480	0.83	+0.2
109,756	-		GFF5480	0.83	+1.5
109,756	-		GFF5480	0.83	-0.1
109,756	-		GFF5480	0.83	-0.5
109,756	-		GFF5480	0.83	-0.6
109,756	-		GFF5480	0.83	-0.6
109,756	-		GFF5480	0.83	+1.0
109,756	-		GFF5480	0.83	-0.1
109,821	+				+2.5
109,822	-				-0.5
109,893	+				-0.5
109,894	-				+2.0
109,894	-				-2.0
110,152	+		GFF5481	0.64	-0.6
110,152	+		GFF5481	0.64	+2.0
110,152	+		GFF5481	0.64	-1.0
110,152	+		GFF5481	0.64	-0.3
110,152	+		GFF5481	0.64	-0.4
110,152	+		GFF5481	0.64	-0.7
110,152	+		GFF5481	0.64	-0.2
110,152	+		GFF5481	0.64	-0.5
110,152	+		GFF5481	0.64	-0.3
110,152	+		GFF5481	0.64	-0.7
110,152	+		GFF5481	0.64	+2.0
110,152	+		GFF5481	0.64	-0.2
110,152	+		GFF5481	0.64	+0.2
110,152	+		GFF5481	0.64	+0.5
110,153	-		GFF5481	0.64	+0.5
110,153	-		GFF5481	0.64	+4.3
110,153	-		GFF5481	0.64	+0.5
110,153	-		GFF5481	0.64	+0.0
110,153	-		GFF5481	0.64	-1.4
110,153	-		GFF5481	0.64	-1.0
110,153	-		GFF5481	0.64	-0.3
110,153	-		GFF5481	0.64	+0.6
110,153	-		GFF5481	0.64	-0.2
110,153	-		GFF5481	0.64	+0.3
110,153	-		GFF5481	0.64	-1.0
110,153	-		GFF5481	0.64	+4.1
110,153	-		GFF5481	0.64	+0.5
110,153	-		GFF5481	0.64	+0.7
110,153	-		GFF5481	0.64	-1.0
110,197	+		GFF5481	0.77	-0.1
110,197	+		GFF5481	0.77	-0.5
110,197	+		GFF5481	0.77	+0.1
110,197	+		GFF5481	0.77	-0.0
110,197	+		GFF5481	0.77	-1.9
110,197	+		GFF5481	0.77	+0.0
110,197	+		GFF5481	0.77	+0.7
110,197	+		GFF5481	0.77	-0.1
110,197	+		GFF5481	0.77	-0.0
110,197	+		GFF5481	0.77	+0.5
110,197	+		GFF5481	0.77	-0.8
110,197	+		GFF5481	0.77	-0.5
110,197	+		GFF5481	0.77	+0.0
110,197	+		GFF5481	0.77	-0.4
110,197	+		GFF5481	0.77	-0.2
110,198	-		GFF5481	0.77	-0.3
110,198	-		GFF5481	0.77	-0.2
110,198	-		GFF5481	0.77	+0.2
110,198	-		GFF5481	0.77	-0.3
110,198	-		GFF5481	0.77	-0.1
110,198	-		GFF5481	0.77	-0.6
110,198	-		GFF5481	0.77	+2.0
110,198	-		GFF5481	0.77	-0.1
110,200	+		GFF5481	0.78	+0.8
110,200	+		GFF5481	0.78	+0.7
110,200	+		GFF5481	0.78	-0.5
110,200	+		GFF5481	0.78	-0.2
110,200	+		GFF5481	0.78	+0.2
110,200	+		GFF5481	0.78	+0.0
110,200	+		GFF5481	0.78	-0.0
110,200	+		GFF5481	0.78	-0.4
110,200	+		GFF5481	0.78	+0.7
110,200	+		GFF5481	0.78	-0.8
110,200	+		GFF5481	0.78	-0.2
110,200	+		GFF5481	0.78	+0.2
110,200	+		GFF5481	0.78	-0.6
110,200	+		GFF5481	0.78	-0.2
110,200	+		GFF5481	0.78	+0.5
110,200	+		GFF5481	0.78	+0.2
110,200	+		GFF5481	0.78	-0.0
110,200	+		GFF5481	0.78	+0.4
110,200	+		GFF5481	0.78	+0.1
110,200	+		GFF5481	0.78	-0.1
110,200	+		GFF5481	0.78	-2.2
110,200	+		GFF5481	0.78	-0.6
110,200	+		GFF5481	0.78	-0.1
110,200	+		GFF5481	0.78	+0.4
110,200	+		GFF5481	0.78	+0.9
110,201	-		GFF5481	0.78	-0.4
110,201	-		GFF5481	0.78	+0.7
110,201	-		GFF5481	0.78	-2.6
110,201	-		GFF5481	0.78	+1.0
110,201	-		GFF5481	0.78	-0.3
110,201	-		GFF5481	0.78	-0.6
110,201	-		GFF5481	0.78	-0.7
110,201	-		GFF5481	0.78	-0.6
110,201	-		GFF5481	0.78	-0.0
110,201	-		GFF5481	0.78	+0.0
110,201	-		GFF5481	0.78	-0.6
110,201	-		GFF5481	0.78	-1.7
110,201	-		GFF5481	0.78	-0.1
110,201	-		GFF5481	0.78	-0.5
110,201	-		GFF5481	0.78	-1.0
110,201	-		GFF5481	0.78	-0.1
110,201	-		GFF5481	0.78	+0.6
110,201	-		GFF5481	0.78	-0.3
110,201	-		GFF5481	0.78	-0.6
110,201	-		GFF5481	0.78	-0.2
110,201	-		GFF5481	0.78	-0.6
110,201	-		GFF5481	0.78	-0.4
110,201	-		GFF5481	0.78	+1.2
110,267	-				-0.2
110,327	+				-0.6
110,328	-				+0.5