Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5415 and GFF5416 are separated by 4 nucleotides GFF5416 and GFF5417 overlap by 4 nucleotides GFF5417 and GFF5418 are separated by 15 nucleotides
GFF5415 - Type IV fimbrial biogenesis protein PilV, at 39,046 to 39,537
GFF5415
GFF5416 - Type IV fimbrial biogenesis protein PilW, at 39,542 to 40,399
GFF5416
GFF5417 - hypothetical protein, at 40,396 to 40,965
GFF5417
GFF5418 - Type IV fimbrial biogenesis protein PilY1, at 40,981 to 45,978
GFF5418
Position (kb) 40
41 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 39.412 kb on - strand, within GFF5415 at 39.505 kb on + strand at 39.505 kb on + strand at 39.505 kb on + strand at 39.505 kb on + strand at 39.505 kb on + strand at 39.505 kb on + strand at 39.505 kb on + strand at 39.506 kb on - strand at 39.506 kb on - strand at 39.506 kb on - strand at 39.506 kb on - strand at 39.506 kb on - strand at 39.506 kb on - strand at 39.506 kb on - strand at 39.506 kb on - strand at 39.506 kb on - strand at 39.514 kb on + strand at 39.514 kb on + strand at 39.514 kb on + strand at 39.514 kb on + strand at 39.514 kb on + strand at 39.514 kb on + strand at 39.514 kb on + strand at 39.514 kb on + strand at 39.514 kb on + strand at 39.515 kb on - strand at 39.515 kb on - strand at 39.515 kb on - strand at 39.515 kb on - strand at 39.515 kb on - strand at 39.515 kb on - strand at 39.515 kb on - strand at 39.515 kb on - strand at 39.680 kb on + strand, within GFF5416 at 39.680 kb on + strand, within GFF5416 at 39.680 kb on + strand, within GFF5416 at 39.680 kb on + strand, within GFF5416 at 39.680 kb on + strand, within GFF5416 at 39.680 kb on + strand, within GFF5416 at 39.680 kb on + strand, within GFF5416 at 39.680 kb on + strand, within GFF5416 at 39.680 kb on + strand, within GFF5416 at 39.680 kb on + strand, within GFF5416 at 39.680 kb on + strand, within GFF5416 at 39.680 kb on + strand, within GFF5416 at 39.680 kb on + strand, within GFF5416 at 39.680 kb on + strand, within GFF5416 at 39.681 kb on - strand, within GFF5416 at 39.681 kb on - strand, within GFF5416 at 39.681 kb on - strand, within GFF5416 at 39.681 kb on - strand, within GFF5416 at 39.681 kb on - strand, within GFF5416 at 39.681 kb on - strand, within GFF5416 at 39.681 kb on - strand, within GFF5416 at 39.681 kb on - strand, within GFF5416 at 39.681 kb on - strand, within GFF5416 at 39.681 kb on - strand, within GFF5416 at 39.681 kb on - strand, within GFF5416 at 39.681 kb on - strand, within GFF5416 at 39.697 kb on + strand, within GFF5416 at 39.697 kb on + strand, within GFF5416 at 39.697 kb on + strand, within GFF5416 at 39.697 kb on + strand, within GFF5416 at 39.698 kb on - strand, within GFF5416 at 39.698 kb on - strand, within GFF5416 at 39.698 kb on - strand, within GFF5416 at 39.698 kb on - strand, within GFF5416 at 39.788 kb on + strand, within GFF5416 at 39.884 kb on + strand, within GFF5416 at 39.884 kb on + strand, within GFF5416 at 39.884 kb on + strand, within GFF5416 at 39.884 kb on + strand, within GFF5416 at 39.884 kb on + strand, within GFF5416 at 39.884 kb on + strand, within GFF5416 at 39.884 kb on + strand, within GFF5416 at 39.884 kb on + strand, within GFF5416 at 39.885 kb on - strand, within GFF5416 at 39.885 kb on - strand, within GFF5416 at 39.885 kb on - strand, within GFF5416 at 39.885 kb on - strand, within GFF5416 at 39.885 kb on - strand, within GFF5416 at 39.885 kb on - strand, within GFF5416 at 39.885 kb on - strand, within GFF5416 at 39.885 kb on - strand, within GFF5416 at 39.885 kb on - strand, within GFF5416 at 39.986 kb on + strand, within GFF5416 at 39.986 kb on + strand, within GFF5416 at 39.987 kb on - strand, within GFF5416 at 39.987 kb on - strand, within GFF5416 at 40.037 kb on + strand, within GFF5416 at 40.037 kb on + strand, within GFF5416 at 40.037 kb on + strand, within GFF5416 at 40.037 kb on + strand, within GFF5416 at 40.037 kb on + strand, within GFF5416 at 40.038 kb on - strand, within GFF5416 at 40.038 kb on - strand, within GFF5416 at 40.229 kb on + strand, within GFF5416 at 40.230 kb on - strand, within GFF5416 at 40.352 kb on + strand at 40.352 kb on + strand at 40.352 kb on + strand at 40.352 kb on + strand at 40.352 kb on + strand at 40.353 kb on - strand at 40.353 kb on - strand at 40.490 kb on + strand, within GFF5417 at 40.490 kb on + strand, within GFF5417 at 40.490 kb on + strand, within GFF5417 at 40.490 kb on + strand, within GFF5417 at 40.491 kb on - strand, within GFF5417 at 40.618 kb on + strand, within GFF5417 at 40.618 kb on + strand, within GFF5417 at 40.618 kb on + strand, within GFF5417 at 40.619 kb on - strand, within GFF5417 at 40.625 kb on + strand, within GFF5417 at 40.625 kb on + strand, within GFF5417 at 40.625 kb on + strand, within GFF5417 at 40.625 kb on + strand, within GFF5417 at 40.625 kb on + strand, within GFF5417 at 40.625 kb on + strand, within GFF5417 at 40.625 kb on + strand, within GFF5417 at 40.625 kb on + strand, within GFF5417 at 40.626 kb on - strand, within GFF5417 at 40.626 kb on - strand, within GFF5417 at 40.626 kb on - strand, within GFF5417 at 40.626 kb on - strand, within GFF5417 at 40.626 kb on - strand, within GFF5417 at 40.626 kb on - strand, within GFF5417 at 40.687 kb on + strand, within GFF5417 at 40.687 kb on + strand, within GFF5417 at 40.687 kb on + strand, within GFF5417 at 40.687 kb on + strand, within GFF5417 at 40.687 kb on + strand, within GFF5417 at 40.687 kb on + strand, within GFF5417 at 40.687 kb on + strand, within GFF5417 at 40.687 kb on + strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.688 kb on - strand, within GFF5417 at 40.722 kb on + strand, within GFF5417 at 40.722 kb on + strand, within GFF5417 at 40.722 kb on + strand, within GFF5417 at 40.723 kb on - strand, within GFF5417 at 40.723 kb on - strand, within GFF5417 at 40.723 kb on - strand, within GFF5417 at 40.769 kb on - strand, within GFF5417 at 40.769 kb on - strand, within GFF5417 at 40.775 kb on - strand, within GFF5417 at 40.775 kb on - strand, within GFF5417 at 40.780 kb on + strand, within GFF5417 at 40.780 kb on + strand, within GFF5417 at 40.789 kb on + strand, within GFF5417 at 40.789 kb on + strand, within GFF5417 at 40.789 kb on + strand, within GFF5417 at 40.789 kb on + strand, within GFF5417 at 40.790 kb on - strand, within GFF5417 at 40.867 kb on + strand, within GFF5417 at 40.867 kb on + strand, within GFF5417 at 40.868 kb on - strand, within GFF5417 at 40.964 kb on - strand at 41.028 kb on + strand at 41.028 kb on + strand at 41.188 kb on + strand at 41.189 kb on - strand at 41.189 kb on - strand at 41.191 kb on + strand at 41.191 kb on + strand at 41.191 kb on + strand at 41.192 kb on - strand at 41.192 kb on - strand at 41.192 kb on - strand at 41.192 kb on - strand at 41.192 kb on - strand at 41.200 kb on + strand at 41.200 kb on + strand at 41.200 kb on + strand at 41.200 kb on + strand at 41.200 kb on + strand at 41.201 kb on - strand at 41.201 kb on - strand at 41.201 kb on - strand at 41.201 kb on - strand at 41.201 kb on - strand at 41.202 kb on + strand at 41.203 kb on - strand at 41.269 kb on + strand at 41.269 kb on + strand at 41.269 kb on + strand at 41.269 kb on + strand at 41.269 kb on + strand at 41.269 kb on + strand at 41.272 kb on + strand at 41.272 kb on + strand at 41.272 kb on + strand at 41.272 kb on + strand at 41.272 kb on + strand at 41.273 kb on - strand at 41.273 kb on - strand at 41.273 kb on - strand at 41.273 kb on - strand at 41.273 kb on - strand at 41.273 kb on - strand at 41.273 kb on - strand at 41.278 kb on + strand at 41.278 kb on + strand at 41.278 kb on + strand at 41.278 kb on + strand at 41.279 kb on - strand at 41.279 kb on - strand at 41.299 kb on + strand at 41.299 kb on + strand at 41.300 kb on - strand at 41.305 kb on + strand at 41.306 kb on - strand at 41.401 kb on + strand at 41.401 kb on + strand at 41.401 kb on + strand at 41.401 kb on + strand at 41.402 kb on - strand at 41.402 kb on - strand at 41.402 kb on - strand at 41.402 kb on - strand at 41.402 kb on - strand at 41.402 kb on - strand at 41.443 kb on + strand at 41.443 kb on + strand at 41.443 kb on + strand at 41.443 kb on + strand at 41.444 kb on - strand at 41.444 kb on - strand at 41.479 kb on - strand at 41.497 kb on + strand, within GFF5418 at 41.497 kb on + strand, within GFF5418 at 41.497 kb on + strand, within GFF5418 at 41.497 kb on + strand, within GFF5418 at 41.497 kb on + strand, within GFF5418 at 41.497 kb on + strand, within GFF5418 at 41.497 kb on + strand, within GFF5418 at 41.498 kb on - strand, within GFF5418 at 41.498 kb on - strand, within GFF5418 at 41.498 kb on - strand, within GFF5418 at 41.498 kb on - strand, within GFF5418 at 41.498 kb on - strand, within GFF5418 at 41.498 kb on - strand, within GFF5418 at 41.498 kb on - strand, within GFF5418 at 41.498 kb on - strand, within GFF5418 at 41.498 kb on - strand, within GFF5418 at 41.534 kb on - strand, within GFF5418 at 41.534 kb on - strand, within GFF5418 at 41.560 kb on + strand, within GFF5418 at 41.560 kb on + strand, within GFF5418 at 41.561 kb on - strand, within GFF5418 at 41.561 kb on - strand, within GFF5418 at 41.575 kb on + strand, within GFF5418 at 41.576 kb on - strand, within GFF5418 at 41.576 kb on - strand, within GFF5418 at 41.964 kb on + strand, within GFF5418 at 41.964 kb on + strand, within GFF5418 at 41.964 kb on + strand, within GFF5418 at 41.965 kb on - strand, within GFF5418 at 41.965 kb on - strand, within GFF5418 at 41.965 kb on - strand, within GFF5418 at 41.965 kb on - strand, within GFF5418
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 39,412 - GFF5415 0.74 +4.4 39,505 + +3.6 39,505 + +3.7 39,505 + +5.0 39,505 + +4.3 39,505 + +4.2 39,505 + +3.8 39,505 + +3.7 39,506 - +4.1 39,506 - +3.8 39,506 - +3.7 39,506 - +3.6 39,506 - +3.7 39,506 - +4.2 39,506 - +3.0 39,506 - +4.3 39,506 - +4.3 39,514 + +4.6 39,514 + +4.3 39,514 + +4.3 39,514 + +3.3 39,514 + +4.5 39,514 + +4.1 39,514 + +3.6 39,514 + +3.8 39,514 + +4.2 39,515 - +4.5 39,515 - +4.2 39,515 - +4.5 39,515 - +3.8 39,515 - +4.1 39,515 - +4.3 39,515 - +4.3 39,515 - +4.1 39,680 + GFF5416 0.16 +3.9 39,680 + GFF5416 0.16 +4.3 39,680 + GFF5416 0.16 +4.0 39,680 + GFF5416 0.16 +4.4 39,680 + GFF5416 0.16 +4.6 39,680 + GFF5416 0.16 +4.3 39,680 + GFF5416 0.16 +4.5 39,680 + GFF5416 0.16 +4.4 39,680 + GFF5416 0.16 +4.2 39,680 + GFF5416 0.16 +4.1 39,680 + GFF5416 0.16 +4.0 39,680 + GFF5416 0.16 +3.4 39,680 + GFF5416 0.16 +4.1 39,680 + GFF5416 0.16 +4.0 39,681 - GFF5416 0.16 +4.1 39,681 - GFF5416 0.16 +4.2 39,681 - GFF5416 0.16 +4.4 39,681 - GFF5416 0.16 +5.0 39,681 - GFF5416 0.16 +4.5 39,681 - GFF5416 0.16 +4.0 39,681 - GFF5416 0.16 +4.3 39,681 - GFF5416 0.16 +4.4 39,681 - GFF5416 0.16 +3.5 39,681 - GFF5416 0.16 +4.1 39,681 - GFF5416 0.16 +4.0 39,681 - GFF5416 0.16 +3.6 39,697 + GFF5416 0.18 +4.3 39,697 + GFF5416 0.18 +4.2 39,697 + GFF5416 0.18 +4.3 39,697 + GFF5416 0.18 +3.6 39,698 - GFF5416 0.18 +4.4 39,698 - GFF5416 0.18 +4.0 39,698 - GFF5416 0.18 +4.4 39,698 - GFF5416 0.18 +4.1 39,788 + GFF5416 0.29 +4.1 39,884 + GFF5416 0.40 +4.3 39,884 + GFF5416 0.40 +3.7 39,884 + GFF5416 0.40 +4.2 39,884 + GFF5416 0.40 +4.2 39,884 + GFF5416 0.40 +3.9 39,884 + GFF5416 0.40 +4.1 39,884 + GFF5416 0.40 +4.7 39,884 + GFF5416 0.40 +4.0 39,885 - GFF5416 0.40 +4.3 39,885 - GFF5416 0.40 +4.0 39,885 - GFF5416 0.40 +4.4 39,885 - GFF5416 0.40 +4.0 39,885 - GFF5416 0.40 +4.5 39,885 - GFF5416 0.40 +4.3 39,885 - GFF5416 0.40 +4.1 39,885 - GFF5416 0.40 +4.1 39,885 - GFF5416 0.40 +4.2 39,986 + GFF5416 0.52 +4.2 39,986 + GFF5416 0.52 +4.0 39,987 - GFF5416 0.52 +4.5 39,987 - GFF5416 0.52 +2.6 40,037 + GFF5416 0.58 +4.2 40,037 + GFF5416 0.58 +3.9 40,037 + GFF5416 0.58 +4.2 40,037 + GFF5416 0.58 +4.0 40,037 + GFF5416 0.58 +4.3 40,038 - GFF5416 0.58 +4.2 40,038 - GFF5416 0.58 +4.1 40,229 + GFF5416 0.80 +4.2 40,230 - GFF5416 0.80 +4.1 40,352 + +4.0 40,352 + +4.1 40,352 + +4.2 40,352 + +3.9 40,352 + +4.2 40,353 - +4.3 40,353 - +3.9 40,490 + GFF5417 0.16 +4.1 40,490 + GFF5417 0.16 +4.6 40,490 + GFF5417 0.16 +4.4 40,490 + GFF5417 0.16 +4.4 40,491 - GFF5417 0.17 +4.3 40,618 + GFF5417 0.39 +4.5 40,618 + GFF5417 0.39 +4.0 40,618 + GFF5417 0.39 +3.6 40,619 - GFF5417 0.39 +4.0 40,625 + GFF5417 0.40 +4.6 40,625 + GFF5417 0.40 +4.3 40,625 + GFF5417 0.40 +3.8 40,625 + GFF5417 0.40 +3.6 40,625 + GFF5417 0.40 +4.4 40,625 + GFF5417 0.40 +4.0 40,625 + GFF5417 0.40 +4.0 40,625 + GFF5417 0.40 +4.0 40,626 - GFF5417 0.40 +3.7 40,626 - GFF5417 0.40 +3.4 40,626 - GFF5417 0.40 +4.2 40,626 - GFF5417 0.40 +4.1 40,626 - GFF5417 0.40 +3.8 40,626 - GFF5417 0.40 +4.4 40,687 + GFF5417 0.51 +4.0 40,687 + GFF5417 0.51 +4.1 40,687 + GFF5417 0.51 +4.2 40,687 + GFF5417 0.51 +3.9 40,687 + GFF5417 0.51 +4.2 40,687 + GFF5417 0.51 +3.8 40,687 + GFF5417 0.51 +5.3 40,687 + GFF5417 0.51 +3.8 40,688 - GFF5417 0.51 +4.7 40,688 - GFF5417 0.51 +3.7 40,688 - GFF5417 0.51 +4.0 40,688 - GFF5417 0.51 +4.1 40,688 - GFF5417 0.51 +4.0 40,688 - GFF5417 0.51 +3.4 40,688 - GFF5417 0.51 +5.0 40,688 - GFF5417 0.51 +4.1 40,688 - GFF5417 0.51 +3.5 40,688 - GFF5417 0.51 +4.0 40,688 - GFF5417 0.51 +4.0 40,688 - GFF5417 0.51 +4.2 40,688 - GFF5417 0.51 +4.3 40,688 - GFF5417 0.51 +5.1 40,722 + GFF5417 0.57 +4.3 40,722 + GFF5417 0.57 +4.0 40,722 + GFF5417 0.57 +4.3 40,723 - GFF5417 0.57 +3.5 40,723 - GFF5417 0.57 +4.2 40,723 - GFF5417 0.57 +4.2 40,769 - GFF5417 0.65 +3.6 40,769 - GFF5417 0.65 +4.2 40,775 - GFF5417 0.66 +4.4 40,775 - GFF5417 0.66 +4.3 40,780 + GFF5417 0.67 +4.0 40,780 + GFF5417 0.67 +3.9 40,789 + GFF5417 0.69 +4.4 40,789 + GFF5417 0.69 +4.5 40,789 + GFF5417 0.69 +3.9 40,789 + GFF5417 0.69 +4.7 40,790 - GFF5417 0.69 +4.4 40,867 + GFF5417 0.83 +4.2 40,867 + GFF5417 0.83 +3.8 40,868 - GFF5417 0.83 +4.7 40,964 - +3.2 41,028 + +3.6 41,028 + +4.2 41,188 + +4.1 41,189 - +3.2 41,189 - +4.1 41,191 + +4.7 41,191 + +3.9 41,191 + +4.4 41,192 - +3.9 41,192 - +4.6 41,192 - +3.8 41,192 - +3.9 41,192 - +4.3 41,200 + +4.3 41,200 + +4.0 41,200 + +4.1 41,200 + +3.5 41,200 + +3.9 41,201 - +3.2 41,201 - +4.3 41,201 - +4.1 41,201 - +4.1 41,201 - +4.8 41,202 + +4.1 41,203 - +4.5 41,269 + +4.2 41,269 + +4.2 41,269 + +4.3 41,269 + +3.9 41,269 + +4.2 41,269 + +4.1 41,272 + +3.8 41,272 + +4.0 41,272 + +4.1 41,272 + +4.7 41,272 + +4.4 41,273 - +4.2 41,273 - +3.5 41,273 - +3.9 41,273 - +3.4 41,273 - +4.3 41,273 - +3.9 41,273 - +3.8 41,278 + +3.8 41,278 + +4.3 41,278 + +4.5 41,278 + +4.3 41,279 - +3.5 41,279 - +3.8 41,299 + +4.4 41,299 + +4.4 41,300 - +3.3 41,305 + +4.3 41,306 - +4.1 41,401 + +4.0 41,401 + +4.3 41,401 + +4.0 41,401 + +4.4 41,402 - +5.7 41,402 - +4.6 41,402 - +4.0 41,402 - +4.2 41,402 - +4.9 41,402 - +3.9 41,443 + +4.3 41,443 + +3.9 41,443 + +3.8 41,443 + +4.3 41,444 - +4.2 41,444 - +3.5 41,479 - +4.2 41,497 + GFF5418 0.10 +4.4 41,497 + GFF5418 0.10 +4.2 41,497 + GFF5418 0.10 +3.2 41,497 + GFF5418 0.10 +4.3 41,497 + GFF5418 0.10 +4.0 41,497 + GFF5418 0.10 +5.0 41,497 + GFF5418 0.10 +4.1 41,498 - GFF5418 0.10 +4.2 41,498 - GFF5418 0.10 +4.1 41,498 - GFF5418 0.10 +3.4 41,498 - GFF5418 0.10 +4.6 41,498 - GFF5418 0.10 +4.0 41,498 - GFF5418 0.10 +4.0 41,498 - GFF5418 0.10 +4.5 41,498 - GFF5418 0.10 +4.6 41,498 - GFF5418 0.10 +5.1 41,534 - GFF5418 0.11 +3.9 41,534 - GFF5418 0.11 +4.3 41,560 + GFF5418 0.12 +4.5 41,560 + GFF5418 0.12 +4.7 41,561 - GFF5418 0.12 +4.2 41,561 - GFF5418 0.12 +3.7 41,575 + GFF5418 0.12 +3.8 41,576 - GFF5418 0.12 +4.2 41,576 - GFF5418 0.12 +3.9 41,964 + GFF5418 0.20 +4.9 41,964 + GFF5418 0.20 +4.2 41,964 + GFF5418 0.20 +4.0 41,965 - GFF5418 0.20 +3.7 41,965 - GFF5418 0.20 +4.3 41,965 - GFF5418 0.20 +3.9 41,965 - GFF5418 0.20 +4.6
Or see this region's nucleotide sequence