Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5390 and GFF5391 are separated by 45 nucleotides GFF5391 and GFF5392 overlap by 20 nucleotides GFF5392 and GFF5393 are separated by 1 nucleotides GFF5393 and GFF5394 are separated by 5 nucleotides GFF5394 and GFF5395 are separated by 32 nucleotides
GFF5390 - RecA protein, at 16,579 to 17,685
GFF5390
GFF5391 - Regulatory protein RecX, at 17,731 to 18,192
GFF5391
GFF5392 - no description, at 18,173 to 18,604
GFF5392
GFF5393 - mandelate racemase/muconate lactonizing enzyme family protein, at 18,606 to 19,715
GFF5393
GFF5394 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 19,721 to 20,548
GFF5394
GFF5395 - Glutamine ABC transporter, ATP-binding protein GlnQ, at 20,581 to 21,309
GFF5395
Position (kb) 18
19
20 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 17.683 kb on + strand at 17.683 kb on + strand at 17.683 kb on + strand at 17.683 kb on + strand at 17.683 kb on + strand at 17.683 kb on + strand at 17.683 kb on + strand at 17.684 kb on - strand at 17.684 kb on - strand at 17.684 kb on - strand at 17.684 kb on - strand at 17.684 kb on - strand at 17.684 kb on - strand at 17.684 kb on - strand at 17.684 kb on - strand at 17.684 kb on - strand at 17.684 kb on - strand at 17.684 kb on - strand at 17.684 kb on - strand at 18.254 kb on + strand, within GFF5392 at 18.254 kb on + strand, within GFF5392 at 18.255 kb on - strand, within GFF5392 at 18.255 kb on - strand, within GFF5392 at 18.255 kb on - strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.446 kb on + strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.447 kb on - strand, within GFF5392 at 18.450 kb on + strand, within GFF5392 at 18.450 kb on + strand, within GFF5392 at 18.450 kb on + strand, within GFF5392 at 18.450 kb on + strand, within GFF5392 at 18.451 kb on - strand, within GFF5392 at 18.757 kb on + strand, within GFF5393 at 18.757 kb on + strand, within GFF5393 at 18.757 kb on + strand, within GFF5393 at 18.757 kb on + strand, within GFF5393 at 18.757 kb on + strand, within GFF5393 at 18.757 kb on + strand, within GFF5393 at 18.757 kb on + strand, within GFF5393 at 18.757 kb on + strand, within GFF5393 at 18.757 kb on + strand, within GFF5393 at 18.757 kb on + strand, within GFF5393 at 18.757 kb on + strand, within GFF5393 at 18.757 kb on + strand, within GFF5393 at 18.757 kb on + strand, within GFF5393 at 18.757 kb on + strand, within GFF5393 at 18.758 kb on - strand, within GFF5393 at 18.758 kb on - strand, within GFF5393 at 18.758 kb on - strand, within GFF5393 at 18.758 kb on - strand, within GFF5393 at 18.758 kb on - strand, within GFF5393 at 18.758 kb on - strand, within GFF5393 at 18.758 kb on - strand, within GFF5393 at 18.758 kb on - strand, within GFF5393 at 18.758 kb on - strand, within GFF5393 at 18.758 kb on - strand, within GFF5393 at 18.758 kb on - strand, within GFF5393 at 18.758 kb on - strand, within GFF5393 at 18.758 kb on - strand, within GFF5393 at 18.758 kb on - strand, within GFF5393 at 18.758 kb on - strand, within GFF5393 at 18.758 kb on - strand, within GFF5393 at 18.758 kb on - strand, within GFF5393 at 18.758 kb on - strand, within GFF5393 at 18.758 kb on - strand, within GFF5393 at 18.758 kb on - strand, within GFF5393 at 18.758 kb on - strand, within GFF5393 at 18.937 kb on + strand, within GFF5393 at 18.937 kb on + strand, within GFF5393 at 18.937 kb on + strand, within GFF5393 at 18.937 kb on + strand, within GFF5393 at 18.937 kb on + strand, within GFF5393 at 18.937 kb on + strand, within GFF5393 at 18.937 kb on + strand, within GFF5393 at 18.937 kb on + strand, within GFF5393 at 18.937 kb on + strand, within GFF5393 at 18.938 kb on - strand, within GFF5393 at 18.938 kb on - strand, within GFF5393 at 18.938 kb on - strand, within GFF5393 at 18.938 kb on - strand, within GFF5393 at 18.938 kb on - strand, within GFF5393 at 18.938 kb on - strand, within GFF5393 at 18.938 kb on - strand, within GFF5393 at 18.961 kb on + strand, within GFF5393 at 18.961 kb on + strand, within GFF5393 at 18.961 kb on + strand, within GFF5393 at 18.961 kb on + strand, within GFF5393 at 18.961 kb on + strand, within GFF5393 at 18.962 kb on - strand, within GFF5393 at 18.962 kb on - strand, within GFF5393 at 18.962 kb on - strand, within GFF5393 at 18.962 kb on - strand, within GFF5393 at 18.962 kb on - strand, within GFF5393 at 18.962 kb on - strand, within GFF5393 at 18.962 kb on - strand, within GFF5393 at 18.962 kb on - strand, within GFF5393 at 18.962 kb on - strand, within GFF5393 at 19.075 kb on + strand, within GFF5393 at 19.075 kb on + strand, within GFF5393 at 19.076 kb on - strand, within GFF5393 at 19.076 kb on - strand, within GFF5393 at 19.076 kb on - strand, within GFF5393 at 19.309 kb on + strand, within GFF5393 at 19.309 kb on + strand, within GFF5393 at 19.309 kb on + strand, within GFF5393 at 19.309 kb on + strand, within GFF5393 at 19.309 kb on + strand, within GFF5393 at 19.309 kb on + strand, within GFF5393 at 19.309 kb on + strand, within GFF5393 at 19.309 kb on + strand, within GFF5393 at 19.309 kb on + strand, within GFF5393 at 19.310 kb on - strand, within GFF5393 at 19.310 kb on - strand, within GFF5393 at 19.310 kb on - strand, within GFF5393 at 19.310 kb on - strand, within GFF5393 at 19.480 kb on + strand, within GFF5393 at 19.480 kb on + strand, within GFF5393 at 19.481 kb on - strand, within GFF5393 at 19.567 kb on + strand, within GFF5393 at 19.567 kb on + strand, within GFF5393 at 19.567 kb on + strand, within GFF5393 at 19.567 kb on + strand, within GFF5393 at 19.567 kb on + strand, within GFF5393 at 19.567 kb on + strand, within GFF5393 at 19.567 kb on + strand, within GFF5393 at 19.567 kb on + strand, within GFF5393 at 19.567 kb on + strand, within GFF5393 at 19.567 kb on + strand, within GFF5393 at 19.567 kb on + strand, within GFF5393 at 19.567 kb on + strand, within GFF5393 at 19.567 kb on + strand, within GFF5393 at 19.567 kb on + strand, within GFF5393 at 19.567 kb on + strand, within GFF5393 at 19.567 kb on + strand, within GFF5393 at 19.567 kb on + strand, within GFF5393 at 19.568 kb on + strand, within GFF5393 at 19.568 kb on - strand, within GFF5393 at 19.568 kb on - strand, within GFF5393 at 19.568 kb on - strand, within GFF5393 at 19.568 kb on - strand, within GFF5393 at 19.568 kb on - strand, within GFF5393 at 19.568 kb on - strand, within GFF5393 at 19.568 kb on - strand, within GFF5393 at 19.568 kb on - strand, within GFF5393 at 19.568 kb on - strand, within GFF5393 at 19.568 kb on - strand, within GFF5393 at 19.568 kb on - strand, within GFF5393 at 19.568 kb on - strand, within GFF5393 at 19.568 kb on - strand, within GFF5393 at 19.568 kb on - strand, within GFF5393 at 19.568 kb on - strand, within GFF5393 at 19.568 kb on - strand, within GFF5393 at 19.568 kb on - strand, within GFF5393 at 19.573 kb on + strand, within GFF5393 at 19.573 kb on + strand, within GFF5393 at 19.573 kb on + strand, within GFF5393 at 19.574 kb on - strand, within GFF5393 at 19.776 kb on + strand at 19.776 kb on + strand at 19.776 kb on + strand at 19.776 kb on + strand at 19.776 kb on + strand at 19.776 kb on + strand at 19.776 kb on + strand at 19.776 kb on + strand at 19.776 kb on + strand at 19.776 kb on + strand at 19.777 kb on - strand at 19.777 kb on - strand at 19.777 kb on - strand at 19.777 kb on - strand at 19.777 kb on - strand at 19.777 kb on - strand at 19.777 kb on - strand at 20.169 kb on + strand, within GFF5394 at 20.169 kb on + strand, within GFF5394 at 20.169 kb on + strand, within GFF5394 at 20.169 kb on + strand, within GFF5394 at 20.380 kb on - strand, within GFF5394 at 20.380 kb on - strand, within GFF5394 at 20.380 kb on - strand, within GFF5394 at 20.678 kb on + strand, within GFF5395 at 20.678 kb on + strand, within GFF5395 at 20.678 kb on + strand, within GFF5395 at 20.678 kb on + strand, within GFF5395 at 20.678 kb on + strand, within GFF5395 at 20.678 kb on + strand, within GFF5395 at 20.678 kb on + strand, within GFF5395 at 20.678 kb on + strand, within GFF5395 at 20.678 kb on + strand, within GFF5395 at 20.678 kb on + strand, within GFF5395 at 20.678 kb on + strand, within GFF5395 at 20.678 kb on + strand, within GFF5395 at 20.678 kb on + strand, within GFF5395 at 20.678 kb on + strand, within GFF5395 at 20.678 kb on + strand, within GFF5395 at 20.679 kb on - strand, within GFF5395 at 20.679 kb on - strand, within GFF5395 at 20.679 kb on - strand, within GFF5395 at 20.679 kb on - strand, within GFF5395 at 20.679 kb on - strand, within GFF5395 at 20.679 kb on - strand, within GFF5395 at 20.679 kb on - strand, within GFF5395 at 20.679 kb on - strand, within GFF5395 at 20.679 kb on - strand, within GFF5395 at 20.679 kb on - strand, within GFF5395 at 20.679 kb on - strand, within GFF5395 at 20.679 kb on - strand, within GFF5395 at 20.679 kb on - strand, within GFF5395 at 20.679 kb on - strand, within GFF5395
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 17,683 + +3.0 17,683 + -0.6 17,683 + -0.1 17,683 + -0.2 17,683 + +0.0 17,683 + -1.3 17,683 + -0.3 17,684 - -0.4 17,684 - -0.0 17,684 - +0.1 17,684 - +0.0 17,684 - +0.5 17,684 - +0.2 17,684 - -0.6 17,684 - -1.0 17,684 - +0.1 17,684 - +0.2 17,684 - +0.3 17,684 - -0.0 18,254 + GFF5392 0.19 +0.9 18,254 + GFF5392 0.19 -0.1 18,255 - GFF5392 0.19 -1.1 18,255 - GFF5392 0.19 -0.8 18,255 - GFF5392 0.19 -0.3 18,446 + GFF5392 0.63 -1.4 18,446 + GFF5392 0.63 +0.0 18,446 + GFF5392 0.63 +0.9 18,446 + GFF5392 0.63 -0.7 18,446 + GFF5392 0.63 -1.1 18,446 + GFF5392 0.63 -0.4 18,446 + GFF5392 0.63 +0.8 18,446 + GFF5392 0.63 -0.6 18,446 + GFF5392 0.63 +0.7 18,446 + GFF5392 0.63 -0.2 18,446 + GFF5392 0.63 -0.7 18,446 + GFF5392 0.63 +0.9 18,446 + GFF5392 0.63 -0.7 18,446 + GFF5392 0.63 -0.6 18,446 + GFF5392 0.63 -0.1 18,447 - GFF5392 0.63 -0.0 18,447 - GFF5392 0.63 -0.5 18,447 - GFF5392 0.63 -0.1 18,447 - GFF5392 0.63 -0.5 18,447 - GFF5392 0.63 -0.4 18,447 - GFF5392 0.63 -0.9 18,447 - GFF5392 0.63 +0.5 18,447 - GFF5392 0.63 -0.5 18,447 - GFF5392 0.63 -1.1 18,447 - GFF5392 0.63 +1.6 18,447 - GFF5392 0.63 -0.4 18,447 - GFF5392 0.63 +0.0 18,447 - GFF5392 0.63 -0.7 18,447 - GFF5392 0.63 -0.9 18,447 - GFF5392 0.63 -0.7 18,447 - GFF5392 0.63 -0.2 18,447 - GFF5392 0.63 -0.1 18,447 - GFF5392 0.63 -1.1 18,447 - GFF5392 0.63 +2.0 18,447 - GFF5392 0.63 +0.1 18,447 - GFF5392 0.63 -1.3 18,447 - GFF5392 0.63 +0.5 18,450 + GFF5392 0.64 -0.5 18,450 + GFF5392 0.64 +1.6 18,450 + GFF5392 0.64 +0.3 18,450 + GFF5392 0.64 -1.3 18,451 - GFF5392 0.64 -0.2 18,757 + GFF5393 0.14 -0.2 18,757 + GFF5393 0.14 +0.3 18,757 + GFF5393 0.14 -0.1 18,757 + GFF5393 0.14 -0.2 18,757 + GFF5393 0.14 -0.1 18,757 + GFF5393 0.14 -0.1 18,757 + GFF5393 0.14 +4.0 18,757 + GFF5393 0.14 +1.0 18,757 + GFF5393 0.14 -0.6 18,757 + GFF5393 0.14 -0.2 18,757 + GFF5393 0.14 -1.1 18,757 + GFF5393 0.14 +5.0 18,757 + GFF5393 0.14 +1.4 18,757 + GFF5393 0.14 -0.5 18,758 - GFF5393 0.14 +1.5 18,758 - GFF5393 0.14 +0.1 18,758 - GFF5393 0.14 +0.0 18,758 - GFF5393 0.14 -0.2 18,758 - GFF5393 0.14 -0.2 18,758 - GFF5393 0.14 -0.1 18,758 - GFF5393 0.14 +0.7 18,758 - GFF5393 0.14 +1.0 18,758 - GFF5393 0.14 -0.6 18,758 - GFF5393 0.14 -0.3 18,758 - GFF5393 0.14 -0.7 18,758 - GFF5393 0.14 -0.3 18,758 - GFF5393 0.14 +0.7 18,758 - GFF5393 0.14 +0.0 18,758 - GFF5393 0.14 -0.5 18,758 - GFF5393 0.14 -1.8 18,758 - GFF5393 0.14 +0.4 18,758 - GFF5393 0.14 +0.2 18,758 - GFF5393 0.14 +0.0 18,758 - GFF5393 0.14 -0.2 18,758 - GFF5393 0.14 +0.2 18,937 + GFF5393 0.30 -1.0 18,937 + GFF5393 0.30 +0.6 18,937 + GFF5393 0.30 -0.4 18,937 + GFF5393 0.30 +0.3 18,937 + GFF5393 0.30 -1.2 18,937 + GFF5393 0.30 +0.3 18,937 + GFF5393 0.30 -2.0 18,937 + GFF5393 0.30 +0.5 18,937 + GFF5393 0.30 -0.7 18,938 - GFF5393 0.30 -0.7 18,938 - GFF5393 0.30 +0.2 18,938 - GFF5393 0.30 -0.3 18,938 - GFF5393 0.30 -0.0 18,938 - GFF5393 0.30 -0.7 18,938 - GFF5393 0.30 -0.3 18,938 - GFF5393 0.30 +0.3 18,961 + GFF5393 0.32 -1.2 18,961 + GFF5393 0.32 +1.0 18,961 + GFF5393 0.32 -0.6 18,961 + GFF5393 0.32 +0.3 18,961 + GFF5393 0.32 +0.5 18,962 - GFF5393 0.32 +0.5 18,962 - GFF5393 0.32 -1.7 18,962 - GFF5393 0.32 -0.7 18,962 - GFF5393 0.32 -0.0 18,962 - GFF5393 0.32 -0.2 18,962 - GFF5393 0.32 -0.7 18,962 - GFF5393 0.32 +0.9 18,962 - GFF5393 0.32 -0.5 18,962 - GFF5393 0.32 -0.6 19,075 + GFF5393 0.42 +0.0 19,075 + GFF5393 0.42 -1.4 19,076 - GFF5393 0.42 -0.0 19,076 - GFF5393 0.42 -0.9 19,076 - GFF5393 0.42 +0.5 19,309 + GFF5393 0.63 -1.3 19,309 + GFF5393 0.63 -0.4 19,309 + GFF5393 0.63 -0.8 19,309 + GFF5393 0.63 -0.8 19,309 + GFF5393 0.63 -0.5 19,309 + GFF5393 0.63 -1.0 19,309 + GFF5393 0.63 +0.6 19,309 + GFF5393 0.63 -0.3 19,309 + GFF5393 0.63 +1.0 19,310 - GFF5393 0.63 -0.1 19,310 - GFF5393 0.63 -0.3 19,310 - GFF5393 0.63 -0.1 19,310 - GFF5393 0.63 -0.2 19,480 + GFF5393 0.79 +0.0 19,480 + GFF5393 0.79 -0.5 19,481 - GFF5393 0.79 -0.3 19,567 + GFF5393 0.87 -0.4 19,567 + GFF5393 0.87 -0.5 19,567 + GFF5393 0.87 -0.4 19,567 + GFF5393 0.87 -0.4 19,567 + GFF5393 0.87 -0.7 19,567 + GFF5393 0.87 -0.9 19,567 + GFF5393 0.87 -0.3 19,567 + GFF5393 0.87 -0.5 19,567 + GFF5393 0.87 -0.1 19,567 + GFF5393 0.87 -0.2 19,567 + GFF5393 0.87 -0.5 19,567 + GFF5393 0.87 -0.6 19,567 + GFF5393 0.87 -0.7 19,567 + GFF5393 0.87 +0.4 19,567 + GFF5393 0.87 -0.6 19,567 + GFF5393 0.87 -0.5 19,567 + GFF5393 0.87 +0.8 19,568 + GFF5393 0.87 -0.4 19,568 - GFF5393 0.87 -0.2 19,568 - GFF5393 0.87 -0.8 19,568 - GFF5393 0.87 -0.1 19,568 - GFF5393 0.87 -1.5 19,568 - GFF5393 0.87 +0.2 19,568 - GFF5393 0.87 +0.5 19,568 - GFF5393 0.87 -0.1 19,568 - GFF5393 0.87 -0.1 19,568 - GFF5393 0.87 +0.5 19,568 - GFF5393 0.87 +0.0 19,568 - GFF5393 0.87 -1.0 19,568 - GFF5393 0.87 +0.0 19,568 - GFF5393 0.87 -0.2 19,568 - GFF5393 0.87 -1.3 19,568 - GFF5393 0.87 -1.0 19,568 - GFF5393 0.87 -0.3 19,568 - GFF5393 0.87 -1.0 19,573 + GFF5393 0.87 -0.9 19,573 + GFF5393 0.87 -0.7 19,573 + GFF5393 0.87 -0.4 19,574 - GFF5393 0.87 -1.0 19,776 + -1.8 19,776 + -0.4 19,776 + +1.5 19,776 + -0.1 19,776 + -0.3 19,776 + +1.5 19,776 + -0.7 19,776 + -0.9 19,776 + +0.3 19,776 + -0.5 19,777 - +0.2 19,777 - +0.1 19,777 - +0.0 19,777 - -0.2 19,777 - +0.5 19,777 - +0.1 19,777 - -0.4 20,169 + GFF5394 0.54 -0.7 20,169 + GFF5394 0.54 +0.2 20,169 + GFF5394 0.54 +1.1 20,169 + GFF5394 0.54 -1.1 20,380 - GFF5394 0.80 -0.2 20,380 - GFF5394 0.80 +0.9 20,380 - GFF5394 0.80 -0.3 20,678 + GFF5395 0.13 -0.5 20,678 + GFF5395 0.13 -1.2 20,678 + GFF5395 0.13 -2.0 20,678 + GFF5395 0.13 -1.4 20,678 + GFF5395 0.13 +0.0 20,678 + GFF5395 0.13 +0.3 20,678 + GFF5395 0.13 -0.7 20,678 + GFF5395 0.13 -0.6 20,678 + GFF5395 0.13 -0.5 20,678 + GFF5395 0.13 +0.3 20,678 + GFF5395 0.13 -0.2 20,678 + GFF5395 0.13 +0.1 20,678 + GFF5395 0.13 +0.5 20,678 + GFF5395 0.13 +0.2 20,678 + GFF5395 0.13 +0.0 20,679 - GFF5395 0.13 +1.0 20,679 - GFF5395 0.13 -0.1 20,679 - GFF5395 0.13 -0.3 20,679 - GFF5395 0.13 -0.3 20,679 - GFF5395 0.13 -0.2 20,679 - GFF5395 0.13 +0.3 20,679 - GFF5395 0.13 -0.3 20,679 - GFF5395 0.13 -0.2 20,679 - GFF5395 0.13 +0.5 20,679 - GFF5395 0.13 -0.6 20,679 - GFF5395 0.13 -1.0 20,679 - GFF5395 0.13 +0.0 20,679 - GFF5395 0.13 +0.8 20,679 - GFF5395 0.13 -1.4
Or see this region's nucleotide sequence