Strain Fitness in Variovorax sp. SCN45 around GFF5347

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5345 and GFF5346 are separated by 32 nucleotidesGFF5346 and GFF5347 are separated by 10 nucleotidesGFF5347 and GFF5348 overlap by 4 nucleotides GFF5345 - Histidinol dehydrogenase (EC 1.1.1.23), at 223,420 to 224,742 GFF5345 GFF5346 - Putative outer membrane lipoprotein, at 224,775 to 225,587 GFF5346 GFF5347 - hypothetical protein, at 225,598 to 225,948 GFF5347 GFF5348 - Histidinol-phosphate aminotransferase (EC 2.6.1.9), at 225,945 to 227,036 GFF5348 Position (kb) 225 226Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 224.733 kb on + strandat 224.733 kb on + strandat 224.734 kb on - strandat 224.734 kb on - strandat 224.790 kb on + strandat 224.790 kb on + strandat 224.790 kb on + strandat 224.791 kb on - strandat 224.791 kb on - strandat 225.015 kb on + strand, within GFF5346at 225.015 kb on + strand, within GFF5346at 225.016 kb on - strand, within GFF5346at 225.016 kb on - strand, within GFF5346at 225.016 kb on - strand, within GFF5346at 225.208 kb on - strand, within GFF5346at 225.208 kb on - strand, within GFF5346at 225.243 kb on + strand, within GFF5346at 225.243 kb on + strand, within GFF5346at 225.244 kb on - strand, within GFF5346at 225.244 kb on - strand, within GFF5346at 225.244 kb on - strand, within GFF5346at 225.244 kb on - strand, within GFF5346at 225.244 kb on - strand, within GFF5346at 225.244 kb on - strand, within GFF5346at 225.287 kb on + strand, within GFF5346at 225.287 kb on + strand, within GFF5346at 225.287 kb on + strand, within GFF5346at 225.315 kb on + strand, within GFF5346at 225.315 kb on + strand, within GFF5346at 225.315 kb on + strand, within GFF5346at 225.315 kb on + strand, within GFF5346at 225.316 kb on - strand, within GFF5346at 225.316 kb on - strand, within GFF5346at 225.411 kb on + strand, within GFF5346at 225.411 kb on + strand, within GFF5346at 225.411 kb on + strand, within GFF5346at 225.411 kb on + strand, within GFF5346at 225.412 kb on - strand, within GFF5346at 225.412 kb on - strand, within GFF5346at 225.412 kb on - strand, within GFF5346at 225.412 kb on - strand, within GFF5346at 225.412 kb on - strand, within GFF5346at 225.558 kb on + strandat 225.558 kb on + strandat 225.558 kb on + strandat 225.558 kb on + strandat 225.558 kb on + strandat 225.558 kb on + strandat 225.559 kb on - strandat 225.559 kb on - strandat 225.559 kb on - strandat 225.559 kb on - strandat 225.712 kb on + strand, within GFF5347at 225.712 kb on + strand, within GFF5347at 225.713 kb on - strand, within GFF5347at 225.713 kb on - strand, within GFF5347at 225.713 kb on - strand, within GFF5347at 225.713 kb on - strand, within GFF5347at 225.713 kb on - strand, within GFF5347at 225.713 kb on - strand, within GFF5347at 225.721 kb on + strand, within GFF5347at 225.721 kb on + strand, within GFF5347at 225.721 kb on + strand, within GFF5347at 225.722 kb on - strand, within GFF5347at 225.722 kb on - strand, within GFF5347at 225.722 kb on - strand, within GFF5347at 225.722 kb on - strand, within GFF5347at 225.722 kb on - strand, within GFF5347at 225.724 kb on + strand, within GFF5347at 225.724 kb on + strand, within GFF5347at 225.724 kb on + strand, within GFF5347at 225.724 kb on + strand, within GFF5347at 225.724 kb on + strand, within GFF5347at 225.724 kb on + strand, within GFF5347at 225.724 kb on + strand, within GFF5347at 225.724 kb on + strand, within GFF5347at 225.725 kb on - strand, within GFF5347at 225.725 kb on - strand, within GFF5347at 225.725 kb on - strand, within GFF5347at 225.725 kb on - strand, within GFF5347at 225.725 kb on - strand, within GFF5347at 225.725 kb on - strand, within GFF5347at 225.725 kb on - strand, within GFF5347at 225.844 kb on + strand, within GFF5347at 225.844 kb on + strand, within GFF5347at 225.844 kb on + strand, within GFF5347at 225.845 kb on - strand, within GFF5347at 225.877 kb on + strand, within GFF5347at 225.877 kb on + strand, within GFF5347at 225.878 kb on - strand, within GFF5347at 225.878 kb on - strand, within GFF5347at 225.878 kb on - strand, within GFF5347at 225.878 kb on - strand, within GFF5347at 225.878 kb on - strand, within GFF5347at 225.931 kb on + strandat 225.931 kb on + strandat 225.931 kb on + strandat 225.932 kb on - strandat 225.932 kb on - strandat 225.932 kb on - strandat 225.932 kb on - strandat 225.932 kb on - strandat 225.932 kb on - strandat 225.932 kb on - strandat 225.997 kb on + strandat 225.997 kb on + strandat 225.997 kb on + strandat 225.997 kb on + strandat 225.997 kb on + strandat 225.997 kb on + strandat 225.998 kb on - strandat 225.998 kb on - strandat 225.998 kb on - strandat 225.998 kb on - strandat 225.998 kb on - strandat 225.998 kb on - strandat 225.998 kb on - strandat 225.998 kb on - strandat 225.999 kb on - strandat 226.014 kb on + strandat 226.014 kb on + strandat 226.014 kb on + strandat 226.015 kb on - strandat 226.015 kb on - strandat 226.015 kb on - strandat 226.015 kb on - strandat 226.015 kb on - strandat 226.015 kb on - strandat 226.021 kb on + strandat 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.308 kb on + strand, within GFF5348at 226.309 kb on - strand, within GFF5348at 226.309 kb on - strand, within GFF5348at 226.309 kb on - strand, within GFF5348at 226.309 kb on - strand, within GFF5348at 226.309 kb on - strand, within GFF5348at 226.309 kb on - strand, within GFF5348at 226.309 kb on - strand, within GFF5348at 226.309 kb on - strand, within GFF5348at 226.309 kb on - strand, within GFF5348at 226.309 kb on - strand, within GFF5348at 226.309 kb on - strand, within GFF5348at 226.309 kb on - strand, within GFF5348at 226.309 kb on - strand, within GFF5348at 226.428 kb on + strand, within GFF5348at 226.428 kb on + strand, within GFF5348at 226.429 kb on - strand, within GFF5348at 226.438 kb on - strand, within GFF5348at 226.539 kb on + strand, within GFF5348at 226.539 kb on + strand, within GFF5348at 226.539 kb on + strand, within GFF5348at 226.539 kb on + strand, within GFF5348at 226.539 kb on + strand, within GFF5348at 226.539 kb on + strand, within GFF5348at 226.539 kb on + strand, within GFF5348at 226.539 kb on + strand, within GFF5348at 226.540 kb on - strand, within GFF5348at 226.540 kb on - strand, within GFF5348at 226.540 kb on - strand, within GFF5348at 226.540 kb on - strand, within GFF5348at 226.540 kb on - strand, within GFF5348at 226.563 kb on + strand, within GFF5348at 226.563 kb on + strand, within GFF5348at 226.563 kb on + strand, within GFF5348at 226.563 kb on + strand, within GFF5348at 226.563 kb on + strand, within GFF5348at 226.563 kb on + strand, within GFF5348at 226.563 kb on + strand, within GFF5348at 226.563 kb on + strand, within GFF5348at 226.564 kb on - strand, within GFF5348at 226.564 kb on - strand, within GFF5348at 226.564 kb on - strand, within GFF5348at 226.564 kb on - strand, within GFF5348at 226.564 kb on - strand, within GFF5348at 226.564 kb on - strand, within GFF5348at 226.564 kb on - strand, within GFF5348at 226.647 kb on + strand, within GFF5348at 226.647 kb on + strand, within GFF5348at 226.648 kb on - strand, within GFF5348at 226.648 kb on - strand, within GFF5348at 226.702 kb on - strand, within GFF5348at 226.702 kb on - strand, within GFF5348at 226.702 kb on - strand, within GFF5348at 226.702 kb on - strand, within GFF5348at 226.702 kb on - strand, within GFF5348at 226.702 kb on - strand, within GFF5348at 226.940 kb on + strandat 226.940 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
224,733 + -0.4
224,733 + -0.5
224,734 - +0.4
224,734 - -1.0
224,790 + -0.3
224,790 + -0.7
224,790 + -0.5
224,791 - -1.2
224,791 - -2.9
225,015 + GFF5346 0.30 -0.6
225,015 + GFF5346 0.30 -0.4
225,016 - GFF5346 0.30 -0.9
225,016 - GFF5346 0.30 -0.6
225,016 - GFF5346 0.30 -0.1
225,208 - GFF5346 0.53 -0.5
225,208 - GFF5346 0.53 -0.8
225,243 + GFF5346 0.58 -0.0
225,243 + GFF5346 0.58 -0.7
225,244 - GFF5346 0.58 -0.6
225,244 - GFF5346 0.58 +1.0
225,244 - GFF5346 0.58 -1.1
225,244 - GFF5346 0.58 +0.1
225,244 - GFF5346 0.58 -0.0
225,244 - GFF5346 0.58 -0.0
225,287 + GFF5346 0.63 +2.0
225,287 + GFF5346 0.63 -0.9
225,287 + GFF5346 0.63 +1.0
225,315 + GFF5346 0.66 -1.2
225,315 + GFF5346 0.66 +0.0
225,315 + GFF5346 0.66 -2.0
225,315 + GFF5346 0.66 -0.0
225,316 - GFF5346 0.67 -0.4
225,316 - GFF5346 0.67 +0.4
225,411 + GFF5346 0.78 +2.0
225,411 + GFF5346 0.78 -0.3
225,411 + GFF5346 0.78 -0.0
225,411 + GFF5346 0.78 -0.7
225,412 - GFF5346 0.78 +0.2
225,412 - GFF5346 0.78 -0.2
225,412 - GFF5346 0.78 -0.8
225,412 - GFF5346 0.78 +1.0
225,412 - GFF5346 0.78 -0.2
225,558 + -0.2
225,558 + +0.4
225,558 + +0.1
225,558 + -1.0
225,558 + +0.4
225,558 + -0.6
225,559 - -1.2
225,559 - -0.7
225,559 - -0.0
225,559 - -0.8
225,712 + GFF5347 0.32 -0.6
225,712 + GFF5347 0.32 -1.4
225,713 - GFF5347 0.33 -2.2
225,713 - GFF5347 0.33 -0.2
225,713 - GFF5347 0.33 -0.2
225,713 - GFF5347 0.33 -0.8
225,713 - GFF5347 0.33 -0.6
225,713 - GFF5347 0.33 -1.5
225,721 + GFF5347 0.35 +1.6
225,721 + GFF5347 0.35 +0.2
225,721 + GFF5347 0.35 -0.8
225,722 - GFF5347 0.35 -1.2
225,722 - GFF5347 0.35 +1.4
225,722 - GFF5347 0.35 +0.7
225,722 - GFF5347 0.35 -1.1
225,722 - GFF5347 0.35 -0.9
225,724 + GFF5347 0.36 +0.2
225,724 + GFF5347 0.36 -0.7
225,724 + GFF5347 0.36 +0.4
225,724 + GFF5347 0.36 -0.2
225,724 + GFF5347 0.36 +0.5
225,724 + GFF5347 0.36 -0.1
225,724 + GFF5347 0.36 -0.5
225,724 + GFF5347 0.36 -0.8
225,725 - GFF5347 0.36 +0.6
225,725 - GFF5347 0.36 +1.0
225,725 - GFF5347 0.36 -0.5
225,725 - GFF5347 0.36 -1.4
225,725 - GFF5347 0.36 +0.3
225,725 - GFF5347 0.36 -0.7
225,725 - GFF5347 0.36 +1.0
225,844 + GFF5347 0.70 +1.2
225,844 + GFF5347 0.70 -0.0
225,844 + GFF5347 0.70 +0.0
225,845 - GFF5347 0.70 -0.5
225,877 + GFF5347 0.79 -0.1
225,877 + GFF5347 0.79 -0.5
225,878 - GFF5347 0.80 -0.6
225,878 - GFF5347 0.80 -0.1
225,878 - GFF5347 0.80 -1.0
225,878 - GFF5347 0.80 +0.4
225,878 - GFF5347 0.80 -0.1
225,931 + -0.3
225,931 + -0.4
225,931 + -0.6
225,932 - -0.0
225,932 - +0.8
225,932 - -0.5
225,932 - -0.4
225,932 - -0.5
225,932 - -0.2
225,932 - -0.4
225,997 + -0.4
225,997 + +0.2
225,997 + -1.0
225,997 + +0.6
225,997 + -0.1
225,997 + +0.1
225,998 - -0.4
225,998 - +0.2
225,998 - -0.5
225,998 - -0.9
225,998 - +0.3
225,998 - +0.1
225,998 - -0.1
225,998 - -0.4
225,999 - +1.8
226,014 + +0.6
226,014 + +0.4
226,014 + -1.5
226,015 - -0.2
226,015 - -0.7
226,015 - -0.3
226,015 - -0.8
226,015 - +0.7
226,015 - +0.1
226,021 + +0.6
226,308 + GFF5348 0.33 -1.0
226,308 + GFF5348 0.33 -0.0
226,308 + GFF5348 0.33 -0.0
226,308 + GFF5348 0.33 -0.0
226,308 + GFF5348 0.33 +0.1
226,308 + GFF5348 0.33 +1.0
226,308 + GFF5348 0.33 -0.2
226,308 + GFF5348 0.33 -1.4
226,308 + GFF5348 0.33 -0.5
226,308 + GFF5348 0.33 -0.3
226,308 + GFF5348 0.33 +0.6
226,308 + GFF5348 0.33 -0.8
226,308 + GFF5348 0.33 -0.1
226,308 + GFF5348 0.33 +0.0
226,308 + GFF5348 0.33 -1.1
226,308 + GFF5348 0.33 -0.8
226,309 - GFF5348 0.33 +0.2
226,309 - GFF5348 0.33 -0.7
226,309 - GFF5348 0.33 -0.5
226,309 - GFF5348 0.33 -2.8
226,309 - GFF5348 0.33 -0.6
226,309 - GFF5348 0.33 +0.8
226,309 - GFF5348 0.33 -1.0
226,309 - GFF5348 0.33 -0.4
226,309 - GFF5348 0.33 -1.0
226,309 - GFF5348 0.33 +0.3
226,309 - GFF5348 0.33 +0.3
226,309 - GFF5348 0.33 -1.0
226,309 - GFF5348 0.33 -1.0
226,428 + GFF5348 0.44 -0.6
226,428 + GFF5348 0.44 +0.6
226,429 - GFF5348 0.44 -1.4
226,438 - GFF5348 0.45 -0.4
226,539 + GFF5348 0.54 +0.1
226,539 + GFF5348 0.54 -0.9
226,539 + GFF5348 0.54 +0.3
226,539 + GFF5348 0.54 +0.4
226,539 + GFF5348 0.54 +1.2
226,539 + GFF5348 0.54 +0.8
226,539 + GFF5348 0.54 -0.5
226,539 + GFF5348 0.54 -0.5
226,540 - GFF5348 0.54 -0.4
226,540 - GFF5348 0.54 +0.7
226,540 - GFF5348 0.54 -1.5
226,540 - GFF5348 0.54 -2.3
226,540 - GFF5348 0.54 -0.1
226,563 + GFF5348 0.57 -1.5
226,563 + GFF5348 0.57 -0.7
226,563 + GFF5348 0.57 -0.3
226,563 + GFF5348 0.57 -0.4
226,563 + GFF5348 0.57 -0.0
226,563 + GFF5348 0.57 -0.1
226,563 + GFF5348 0.57 -0.7
226,563 + GFF5348 0.57 +3.0
226,564 - GFF5348 0.57 -1.6
226,564 - GFF5348 0.57 -0.0
226,564 - GFF5348 0.57 -0.6
226,564 - GFF5348 0.57 -0.6
226,564 - GFF5348 0.57 -2.4
226,564 - GFF5348 0.57 +0.2
226,564 - GFF5348 0.57 +1.0
226,647 + GFF5348 0.64 +0.5
226,647 + GFF5348 0.64 +0.1
226,648 - GFF5348 0.64 +1.3
226,648 - GFF5348 0.64 -0.5
226,702 - GFF5348 0.69 +1.4
226,702 - GFF5348 0.69 +0.1
226,702 - GFF5348 0.69 +1.5
226,702 - GFF5348 0.69 -0.4
226,702 - GFF5348 0.69 -0.3
226,702 - GFF5348 0.69 -1.2
226,940 + +1.0
226,940 + -0.4

Or see this region's nucleotide sequence