Strain Fitness in Variovorax sp. SCN45 around GFF5339

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5337 and GFF5338 are separated by 165 nucleotidesGFF5338 and GFF5339 are separated by 10 nucleotidesGFF5339 and GFF5340 are separated by 33 nucleotidesGFF5340 and GFF5341 overlap by 4 nucleotides GFF5337 - Outer-membrane-phospholipid-binding lipoprotein MlaA, at 217,607 to 218,314 GFF5337 GFF5338 - Phospholipid ABC transporter shuttle protein MlaC, at 218,480 to 219,136 GFF5338 GFF5339 - Phospholipid ABC transporter-binding protein MlaB, at 219,147 to 219,422 GFF5339 GFF5340 - Efflux ABC transporter, ATP-binding protein, at 219,456 to 220,403 GFF5340 GFF5341 - Efflux ABC transporter, permease protein, at 220,400 to 221,164 GFF5341 Position (kb) 219 220Strain fitness (log2 ratio) -2 -1 0 1 2at 218.183 kb on + strand, within GFF5337at 218.183 kb on + strand, within GFF5337at 218.184 kb on - strand, within GFF5337at 218.184 kb on - strand, within GFF5337at 218.184 kb on - strand, within GFF5337at 218.228 kb on + strand, within GFF5337at 218.228 kb on + strand, within GFF5337at 218.228 kb on + strand, within GFF5337at 218.228 kb on + strand, within GFF5337at 218.228 kb on + strand, within GFF5337at 218.228 kb on + strand, within GFF5337at 218.229 kb on - strand, within GFF5337at 218.229 kb on - strand, within GFF5337at 218.229 kb on - strand, within GFF5337at 218.229 kb on - strand, within GFF5337at 218.229 kb on - strand, within GFF5337at 218.229 kb on - strand, within GFF5337at 218.276 kb on + strandat 218.276 kb on + strandat 218.276 kb on + strandat 218.276 kb on + strandat 218.276 kb on + strandat 218.276 kb on + strandat 218.276 kb on + strandat 218.276 kb on + strandat 218.276 kb on + strandat 218.277 kb on - strandat 218.277 kb on - strandat 218.277 kb on - strandat 218.277 kb on - strandat 218.277 kb on - strandat 218.277 kb on - strandat 218.277 kb on - strandat 218.312 kb on + strandat 218.313 kb on - strandat 218.318 kb on + strandat 218.318 kb on + strandat 218.318 kb on + strandat 218.318 kb on + strandat 218.318 kb on + strandat 218.318 kb on + strandat 218.319 kb on - strandat 218.319 kb on - strandat 218.319 kb on - strandat 218.319 kb on - strandat 218.319 kb on - strandat 218.319 kb on - strandat 218.319 kb on - strandat 218.319 kb on - strandat 218.828 kb on + strand, within GFF5338at 218.828 kb on + strand, within GFF5338at 218.828 kb on + strand, within GFF5338at 218.828 kb on + strand, within GFF5338at 218.828 kb on + strand, within GFF5338at 218.828 kb on + strand, within GFF5338at 218.828 kb on + strand, within GFF5338at 218.829 kb on - strand, within GFF5338at 218.829 kb on - strand, within GFF5338at 218.829 kb on - strand, within GFF5338at 218.829 kb on - strand, within GFF5338at 218.829 kb on - strand, within GFF5338at 218.829 kb on - strand, within GFF5338at 218.829 kb on - strand, within GFF5338at 218.829 kb on - strand, within GFF5338at 218.957 kb on + strand, within GFF5338at 218.958 kb on - strand, within GFF5338at 218.958 kb on - strand, within GFF5338at 219.002 kb on + strand, within GFF5338at 219.002 kb on + strand, within GFF5338at 219.002 kb on + strand, within GFF5338at 219.002 kb on + strand, within GFF5338at 219.002 kb on + strand, within GFF5338at 219.003 kb on - strand, within GFF5338at 219.003 kb on - strand, within GFF5338at 219.003 kb on - strand, within GFF5338at 219.003 kb on - strand, within GFF5338at 219.003 kb on - strand, within GFF5338at 219.037 kb on + strand, within GFF5338at 219.038 kb on - strand, within GFF5338at 219.041 kb on + strand, within GFF5338at 219.041 kb on + strand, within GFF5338at 219.041 kb on + strand, within GFF5338at 219.042 kb on - strand, within GFF5338at 219.042 kb on - strand, within GFF5338at 219.042 kb on - strand, within GFF5338at 219.387 kb on + strand, within GFF5339at 219.387 kb on + strand, within GFF5339at 219.387 kb on + strand, within GFF5339at 219.388 kb on - strand, within GFF5339at 219.388 kb on - strand, within GFF5339at 219.388 kb on - strand, within GFF5339at 219.428 kb on + strandat 219.492 kb on + strandat 219.492 kb on + strandat 219.492 kb on + strandat 219.492 kb on + strandat 219.492 kb on + strandat 219.492 kb on + strandat 219.492 kb on + strandat 219.492 kb on + strandat 219.493 kb on - strandat 219.493 kb on - strandat 219.493 kb on - strandat 219.493 kb on - strandat 219.493 kb on - strandat 219.493 kb on - strandat 219.699 kb on + strand, within GFF5340at 219.699 kb on + strand, within GFF5340at 219.795 kb on + strand, within GFF5340at 219.796 kb on - strand, within GFF5340at 219.796 kb on - strand, within GFF5340at 220.037 kb on + strand, within GFF5340at 220.038 kb on - strand, within GFF5340at 220.038 kb on - strand, within GFF5340at 220.038 kb on - strand, within GFF5340at 220.038 kb on - strand, within GFF5340at 220.059 kb on + strand, within GFF5340at 220.059 kb on + strand, within GFF5340at 220.059 kb on + strand, within GFF5340at 220.059 kb on + strand, within GFF5340at 220.060 kb on - strand, within GFF5340at 220.060 kb on - strand, within GFF5340

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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218,183 + GFF5337 0.81 -0.9
218,183 + GFF5337 0.81 -0.5
218,184 - GFF5337 0.81 -1.0
218,184 - GFF5337 0.81 -0.7
218,184 - GFF5337 0.81 -0.9
218,228 + GFF5337 0.88 +0.4
218,228 + GFF5337 0.88 -0.2
218,228 + GFF5337 0.88 +0.4
218,228 + GFF5337 0.88 +1.4
218,228 + GFF5337 0.88 -0.6
218,228 + GFF5337 0.88 -1.3
218,229 - GFF5337 0.88 +0.6
218,229 - GFF5337 0.88 +0.4
218,229 - GFF5337 0.88 -1.0
218,229 - GFF5337 0.88 -0.2
218,229 - GFF5337 0.88 -0.0
218,229 - GFF5337 0.88 -1.0
218,276 + -0.0
218,276 + -0.3
218,276 + +1.4
218,276 + -0.3
218,276 + -1.2
218,276 + -0.0
218,276 + -0.4
218,276 + -0.1
218,276 + -1.7
218,277 - +0.1
218,277 - -0.7
218,277 - -0.8
218,277 - -0.1
218,277 - -0.9
218,277 - -0.5
218,277 - +0.0
218,312 + -0.2
218,313 - +1.0
218,318 + +0.7
218,318 + -0.3
218,318 + -0.8
218,318 + -1.2
218,318 + -0.9
218,318 + -0.9
218,319 - +1.0
218,319 - -0.6
218,319 - +0.7
218,319 - -0.7
218,319 - -1.2
218,319 - -0.4
218,319 - -0.7
218,319 - +0.6
218,828 + GFF5338 0.53 +2.0
218,828 + GFF5338 0.53 -0.7
218,828 + GFF5338 0.53 +0.2
218,828 + GFF5338 0.53 -1.5
218,828 + GFF5338 0.53 -0.7
218,828 + GFF5338 0.53 +0.2
218,828 + GFF5338 0.53 +0.1
218,829 - GFF5338 0.53 -0.2
218,829 - GFF5338 0.53 +0.5
218,829 - GFF5338 0.53 -0.2
218,829 - GFF5338 0.53 -0.0
218,829 - GFF5338 0.53 +0.6
218,829 - GFF5338 0.53 -0.0
218,829 - GFF5338 0.53 -1.0
218,829 - GFF5338 0.53 -0.1
218,957 + GFF5338 0.73 -1.7
218,958 - GFF5338 0.73 -1.0
218,958 - GFF5338 0.73 +1.0
219,002 + GFF5338 0.79 +0.1
219,002 + GFF5338 0.79 -0.3
219,002 + GFF5338 0.79 -1.1
219,002 + GFF5338 0.79 -0.0
219,002 + GFF5338 0.79 -1.4
219,003 - GFF5338 0.80 -0.1
219,003 - GFF5338 0.80 -0.4
219,003 - GFF5338 0.80 +0.1
219,003 - GFF5338 0.80 -0.6
219,003 - GFF5338 0.80 +0.1
219,037 + GFF5338 0.85 -2.1
219,038 - GFF5338 0.85 -1.1
219,041 + GFF5338 0.85 -2.0
219,041 + GFF5338 0.85 -0.5
219,041 + GFF5338 0.85 -1.0
219,042 - GFF5338 0.86 -1.3
219,042 - GFF5338 0.86 -0.8
219,042 - GFF5338 0.86 -1.3
219,387 + GFF5339 0.87 -0.9
219,387 + GFF5339 0.87 +0.1
219,387 + GFF5339 0.87 -1.1
219,388 - GFF5339 0.87 -1.4
219,388 - GFF5339 0.87 -0.6
219,388 - GFF5339 0.87 -0.9
219,428 + -1.5
219,492 + -0.6
219,492 + -0.0
219,492 + -0.3
219,492 + -0.9
219,492 + -0.9
219,492 + +0.4
219,492 + -0.2
219,492 + +0.8
219,493 - -0.3
219,493 - -0.6
219,493 - -0.6
219,493 - +0.6
219,493 - +0.6
219,493 - +1.1
219,699 + GFF5340 0.26 -0.3
219,699 + GFF5340 0.26 -0.5
219,795 + GFF5340 0.36 -0.6
219,796 - GFF5340 0.36 +0.4
219,796 - GFF5340 0.36 -1.2
220,037 + GFF5340 0.61 -0.3
220,038 - GFF5340 0.61 +0.7
220,038 - GFF5340 0.61 -1.6
220,038 - GFF5340 0.61 +0.4
220,038 - GFF5340 0.61 +2.0
220,059 + GFF5340 0.64 -0.0
220,059 + GFF5340 0.64 -1.4
220,059 + GFF5340 0.64 +0.8
220,059 + GFF5340 0.64 -0.6
220,060 - GFF5340 0.64 -0.6
220,060 - GFF5340 0.64 -0.3

Or see this region's nucleotide sequence