Strain Fitness in Variovorax sp. SCN45 around GFF5321

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5319 and GFF5320 overlap by 4 nucleotidesGFF5320 and GFF5321 are separated by 6 nucleotidesGFF5321 and GFF5322 overlap by 4 nucleotidesGFF5322 and GFF5323 overlap by 4 nucleotides GFF5319 - Type IV pilus biogenesis protein PilM, at 196,744 to 197,823 GFF5319 GFF5320 - Type IV pilus biogenesis protein PilN, at 197,820 to 198,443 GFF5320 GFF5321 - Type IV pilus biogenesis protein PilO, at 198,450 to 199,127 GFF5321 GFF5322 - Type IV pilus biogenesis protein PilP, at 199,124 to 199,663 GFF5322 GFF5323 - Type IV pilus biogenesis protein PilQ, at 199,660 to 201,840 GFF5323 Position (kb) 198 199 200Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 197.461 kb on + strand, within GFF5319at 197.462 kb on - strand, within GFF5319at 197.462 kb on - strand, within GFF5319at 197.521 kb on + strand, within GFF5319at 197.521 kb on + strand, within GFF5319at 197.521 kb on + strand, within GFF5319at 197.522 kb on - strand, within GFF5319at 197.522 kb on - strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.624 kb on - strand, within GFF5319at 197.624 kb on - strand, within GFF5319at 197.624 kb on - strand, within GFF5319at 197.624 kb on - strand, within GFF5319at 197.624 kb on - strand, within GFF5319at 197.624 kb on - strand, within GFF5319at 197.624 kb on - strand, within GFF5319at 197.624 kb on - strand, within GFF5319at 197.624 kb on - strand, within GFF5319at 197.624 kb on - strand, within GFF5319at 197.624 kb on - strand, within GFF5319at 197.624 kb on - strand, within GFF5319at 197.779 kb on + strandat 197.779 kb on + strandat 197.779 kb on + strandat 197.779 kb on + strandat 197.779 kb on + strandat 197.780 kb on - strandat 197.780 kb on - strandat 197.780 kb on - strandat 197.780 kb on - strandat 197.780 kb on - strandat 197.780 kb on - strandat 197.883 kb on + strand, within GFF5320at 197.883 kb on + strand, within GFF5320at 197.883 kb on + strand, within GFF5320at 197.883 kb on + strand, within GFF5320at 197.883 kb on + strand, within GFF5320at 197.883 kb on + strand, within GFF5320at 197.883 kb on + strand, within GFF5320at 197.883 kb on + strand, within GFF5320at 197.883 kb on + strand, within GFF5320at 197.884 kb on - strand, within GFF5320at 197.884 kb on - strand, within GFF5320at 197.884 kb on - strand, within GFF5320at 197.884 kb on - strand, within GFF5320at 197.884 kb on - strand, within GFF5320at 197.884 kb on - strand, within GFF5320at 197.884 kb on - strand, within GFF5320at 197.884 kb on - strand, within GFF5320at 197.884 kb on - strand, within GFF5320at 197.937 kb on + strand, within GFF5320at 197.937 kb on + strand, within GFF5320at 197.938 kb on - strand, within GFF5320at 197.938 kb on - strand, within GFF5320at 197.946 kb on + strand, within GFF5320at 197.946 kb on + strand, within GFF5320at 197.947 kb on - strand, within GFF5320at 197.947 kb on - strand, within GFF5320at 197.947 kb on - strand, within GFF5320at 198.159 kb on + strand, within GFF5320at 198.159 kb on + strand, within GFF5320at 198.159 kb on + strand, within GFF5320at 198.159 kb on + strand, within GFF5320at 198.159 kb on + strand, within GFF5320at 198.159 kb on + strand, within GFF5320at 198.160 kb on - strand, within GFF5320at 198.160 kb on - strand, within GFF5320at 198.245 kb on + strand, within GFF5320at 198.245 kb on + strand, within GFF5320at 198.469 kb on + strandat 198.633 kb on + strand, within GFF5321at 198.687 kb on + strand, within GFF5321at 198.687 kb on + strand, within GFF5321at 198.688 kb on - strand, within GFF5321at 198.688 kb on - strand, within GFF5321at 198.688 kb on - strand, within GFF5321at 198.756 kb on + strand, within GFF5321at 198.756 kb on + strand, within GFF5321at 198.756 kb on + strand, within GFF5321at 198.756 kb on + strand, within GFF5321at 198.756 kb on + strand, within GFF5321at 198.756 kb on + strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.891 kb on + strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.933 kb on + strand, within GFF5321at 198.933 kb on + strand, within GFF5321at 198.933 kb on + strand, within GFF5321at 198.933 kb on + strand, within GFF5321at 198.933 kb on + strand, within GFF5321at 198.934 kb on - strand, within GFF5321at 198.934 kb on - strand, within GFF5321at 198.934 kb on - strand, within GFF5321at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.290 kb on - strand, within GFF5322at 199.290 kb on - strand, within GFF5322at 199.290 kb on - strand, within GFF5322at 199.290 kb on - strand, within GFF5322at 199.290 kb on - strand, within GFF5322at 199.508 kb on + strand, within GFF5322at 199.508 kb on + strand, within GFF5322at 199.508 kb on + strand, within GFF5322at 199.509 kb on - strand, within GFF5322at 199.509 kb on - strand, within GFF5322at 199.509 kb on - strand, within GFF5322at 199.509 kb on - strand, within GFF5322at 199.509 kb on - strand, within GFF5322at 199.509 kb on - strand, within GFF5322at 199.509 kb on - strand, within GFF5322at 199.511 kb on + strand, within GFF5322at 199.529 kb on + strand, within GFF5322at 199.529 kb on + strand, within GFF5322at 199.530 kb on - strand, within GFF5322at 199.530 kb on - strand, within GFF5322at 199.530 kb on - strand, within GFF5322at 199.544 kb on + strand, within GFF5322at 199.544 kb on + strand, within GFF5322at 199.544 kb on + strand, within GFF5322at 199.545 kb on - strand, within GFF5322at 199.629 kb on + strandat 199.629 kb on + strandat 199.629 kb on + strandat 200.011 kb on + strand, within GFF5323at 200.011 kb on + strand, within GFF5323at 200.011 kb on + strand, within GFF5323at 200.011 kb on + strand, within GFF5323at 200.011 kb on + strand, within GFF5323at 200.011 kb on + strand, within GFF5323at 200.011 kb on + strand, within GFF5323at 200.011 kb on + strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.039 kb on + strand, within GFF5323

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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197,461 + GFF5319 0.66 +4.5
197,462 - GFF5319 0.66 +4.2
197,462 - GFF5319 0.66 +3.9
197,521 + GFF5319 0.72 +4.3
197,521 + GFF5319 0.72 +4.3
197,521 + GFF5319 0.72 +3.9
197,522 - GFF5319 0.72 +4.2
197,522 - GFF5319 0.72 +4.1
197,623 + GFF5319 0.81 +5.0
197,623 + GFF5319 0.81 +3.9
197,623 + GFF5319 0.81 +4.3
197,623 + GFF5319 0.81 +4.1
197,623 + GFF5319 0.81 +3.6
197,623 + GFF5319 0.81 +4.8
197,623 + GFF5319 0.81 +4.3
197,623 + GFF5319 0.81 +4.1
197,623 + GFF5319 0.81 +4.2
197,623 + GFF5319 0.81 +3.4
197,623 + GFF5319 0.81 +4.2
197,623 + GFF5319 0.81 +3.4
197,623 + GFF5319 0.81 +4.1
197,623 + GFF5319 0.81 +4.0
197,623 + GFF5319 0.81 +4.4
197,623 + GFF5319 0.81 +3.7
197,623 + GFF5319 0.81 +4.1
197,623 + GFF5319 0.81 +5.0
197,623 + GFF5319 0.81 +4.7
197,624 - GFF5319 0.81 +3.8
197,624 - GFF5319 0.81 +3.9
197,624 - GFF5319 0.81 +3.9
197,624 - GFF5319 0.81 +3.8
197,624 - GFF5319 0.81 +3.9
197,624 - GFF5319 0.81 +4.1
197,624 - GFF5319 0.81 +4.2
197,624 - GFF5319 0.81 +4.0
197,624 - GFF5319 0.81 +3.9
197,624 - GFF5319 0.81 +4.0
197,624 - GFF5319 0.81 +3.9
197,624 - GFF5319 0.81 +3.9
197,779 + +4.4
197,779 + +4.4
197,779 + +4.3
197,779 + +4.1
197,779 + +4.5
197,780 - +4.5
197,780 - +4.2
197,780 - +4.1
197,780 - +4.4
197,780 - +3.8
197,780 - +4.3
197,883 + GFF5320 0.10 +4.4
197,883 + GFF5320 0.10 +4.1
197,883 + GFF5320 0.10 +4.6
197,883 + GFF5320 0.10 +4.0
197,883 + GFF5320 0.10 +4.1
197,883 + GFF5320 0.10 +4.2
197,883 + GFF5320 0.10 +3.5
197,883 + GFF5320 0.10 +3.8
197,883 + GFF5320 0.10 +3.7
197,884 - GFF5320 0.10 +3.5
197,884 - GFF5320 0.10 +3.0
197,884 - GFF5320 0.10 +4.6
197,884 - GFF5320 0.10 +3.8
197,884 - GFF5320 0.10 +4.1
197,884 - GFF5320 0.10 +3.8
197,884 - GFF5320 0.10 +4.2
197,884 - GFF5320 0.10 +4.2
197,884 - GFF5320 0.10 +4.4
197,937 + GFF5320 0.19 +4.7
197,937 + GFF5320 0.19 +4.0
197,938 - GFF5320 0.19 +4.5
197,938 - GFF5320 0.19 +4.1
197,946 + GFF5320 0.20 +4.1
197,946 + GFF5320 0.20 +4.0
197,947 - GFF5320 0.20 +3.8
197,947 - GFF5320 0.20 +4.1
197,947 - GFF5320 0.20 +4.2
198,159 + GFF5320 0.54 +3.1
198,159 + GFF5320 0.54 +3.3
198,159 + GFF5320 0.54 +4.6
198,159 + GFF5320 0.54 +4.0
198,159 + GFF5320 0.54 +4.1
198,159 + GFF5320 0.54 +4.3
198,160 - GFF5320 0.54 +4.3
198,160 - GFF5320 0.54 +4.2
198,245 + GFF5320 0.68 +4.4
198,245 + GFF5320 0.68 +4.3
198,469 + +0.9
198,633 + GFF5321 0.27 +5.1
198,687 + GFF5321 0.35 +4.2
198,687 + GFF5321 0.35 +3.9
198,688 - GFF5321 0.35 +3.6
198,688 - GFF5321 0.35 +3.6
198,688 - GFF5321 0.35 +4.2
198,756 + GFF5321 0.45 +5.8
198,756 + GFF5321 0.45 +4.6
198,756 + GFF5321 0.45 +4.0
198,756 + GFF5321 0.45 +4.3
198,756 + GFF5321 0.45 +4.1
198,756 + GFF5321 0.45 +4.2
198,757 - GFF5321 0.45 +4.2
198,757 - GFF5321 0.45 +4.2
198,757 - GFF5321 0.45 +4.1
198,757 - GFF5321 0.45 +4.1
198,757 - GFF5321 0.45 +3.8
198,757 - GFF5321 0.45 +4.7
198,757 - GFF5321 0.45 +4.2
198,757 - GFF5321 0.45 +3.7
198,757 - GFF5321 0.45 +4.6
198,891 + GFF5321 0.65 +3.6
198,892 - GFF5321 0.65 +4.4
198,892 - GFF5321 0.65 +3.7
198,892 - GFF5321 0.65 +3.9
198,892 - GFF5321 0.65 +4.2
198,892 - GFF5321 0.65 +4.5
198,892 - GFF5321 0.65 +4.4
198,892 - GFF5321 0.65 +4.3
198,892 - GFF5321 0.65 +4.0
198,892 - GFF5321 0.65 +4.1
198,894 + GFF5321 0.65 +3.9
198,894 + GFF5321 0.65 +4.0
198,894 + GFF5321 0.65 +3.8
198,894 + GFF5321 0.65 +4.2
198,894 + GFF5321 0.65 +3.4
198,894 + GFF5321 0.65 +4.2
198,894 + GFF5321 0.65 +3.6
198,894 + GFF5321 0.65 +4.1
198,894 + GFF5321 0.65 +4.3
198,895 - GFF5321 0.66 +3.4
198,895 - GFF5321 0.66 +4.3
198,895 - GFF5321 0.66 +4.0
198,895 - GFF5321 0.66 +4.1
198,895 - GFF5321 0.66 +3.7
198,895 - GFF5321 0.66 +4.1
198,895 - GFF5321 0.66 +4.1
198,895 - GFF5321 0.66 +4.2
198,895 - GFF5321 0.66 +3.3
198,933 + GFF5321 0.71 +5.2
198,933 + GFF5321 0.71 +4.9
198,933 + GFF5321 0.71 +4.3
198,933 + GFF5321 0.71 +4.4
198,933 + GFF5321 0.71 +3.9
198,934 - GFF5321 0.71 +4.1
198,934 - GFF5321 0.71 +3.2
198,934 - GFF5321 0.71 +4.2
199,289 + GFF5322 0.31 +4.3
199,289 + GFF5322 0.31 +4.0
199,289 + GFF5322 0.31 +4.5
199,289 + GFF5322 0.31 +4.3
199,289 + GFF5322 0.31 +4.5
199,289 + GFF5322 0.31 +3.8
199,289 + GFF5322 0.31 +4.0
199,289 + GFF5322 0.31 +3.8
199,289 + GFF5322 0.31 +4.3
199,290 - GFF5322 0.31 +4.0
199,290 - GFF5322 0.31 +4.2
199,290 - GFF5322 0.31 +4.4
199,290 - GFF5322 0.31 +4.2
199,290 - GFF5322 0.31 +4.1
199,508 + GFF5322 0.71 +4.3
199,508 + GFF5322 0.71 +4.1
199,508 + GFF5322 0.71 +4.0
199,509 - GFF5322 0.71 +4.4
199,509 - GFF5322 0.71 +3.9
199,509 - GFF5322 0.71 +4.0
199,509 - GFF5322 0.71 +4.3
199,509 - GFF5322 0.71 +4.8
199,509 - GFF5322 0.71 +3.6
199,509 - GFF5322 0.71 +4.0
199,511 + GFF5322 0.72 +4.0
199,529 + GFF5322 0.75 +4.2
199,529 + GFF5322 0.75 +4.0
199,530 - GFF5322 0.75 +4.2
199,530 - GFF5322 0.75 +4.1
199,530 - GFF5322 0.75 +4.1
199,544 + GFF5322 0.78 +3.7
199,544 + GFF5322 0.78 +4.2
199,544 + GFF5322 0.78 +3.4
199,545 - GFF5322 0.78 +3.9
199,629 + +3.9
199,629 + +4.2
199,629 + +3.7
200,011 + GFF5323 0.16 +3.4
200,011 + GFF5323 0.16 +3.9
200,011 + GFF5323 0.16 +3.7
200,011 + GFF5323 0.16 +4.6
200,011 + GFF5323 0.16 +4.3
200,011 + GFF5323 0.16 +4.4
200,011 + GFF5323 0.16 +3.8
200,011 + GFF5323 0.16 +3.7
200,012 - GFF5323 0.16 +4.4
200,012 - GFF5323 0.16 +4.1
200,012 - GFF5323 0.16 +4.4
200,012 - GFF5323 0.16 +4.0
200,012 - GFF5323 0.16 +4.5
200,012 - GFF5323 0.16 +3.5
200,012 - GFF5323 0.16 +6.1
200,012 - GFF5323 0.16 +2.5
200,012 - GFF5323 0.16 +4.3
200,012 - GFF5323 0.16 +3.8
200,039 + GFF5323 0.17 +4.1

Or see this region's nucleotide sequence