Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5288 and GFF5289 overlap by 4 nucleotides GFF5289 and GFF5290 are separated by 137 nucleotides GFF5290 and GFF5291 are separated by 208 nucleotides
GFF5288 - Uncharacterized protein PA4513, at 158,057 to 160,672
GFF5288
GFF5289 - hypothetical protein, at 160,669 to 161,424
GFF5289
GFF5290 - hypothetical protein, at 161,562 to 161,909
GFF5290
GFF5291 - Ferrichrome-iron receptor, at 162,118 to 164,268
GFF5291
Position (kb) 161
162 Strain fitness (log2 ratio) -1
0
1
2 at 160.652 kb on + strand at 160.667 kb on + strand at 160.667 kb on + strand at 160.667 kb on + strand at 160.667 kb on + strand at 160.667 kb on + strand at 160.667 kb on + strand at 160.668 kb on - strand at 160.668 kb on - strand at 160.668 kb on - strand at 160.668 kb on - strand at 160.668 kb on - strand at 160.668 kb on - strand at 160.670 kb on + strand at 160.670 kb on + strand at 160.671 kb on - strand at 160.757 kb on + strand, within GFF5289 at 161.351 kb on + strand at 161.352 kb on - strand at 161.584 kb on + strand at 161.585 kb on - strand at 161.585 kb on - strand at 161.585 kb on - strand at 161.585 kb on - strand at 161.677 kb on - strand, within GFF5290 at 161.677 kb on - strand, within GFF5290 at 161.727 kb on + strand, within GFF5290 at 161.727 kb on + strand, within GFF5290 at 161.727 kb on + strand, within GFF5290 at 161.727 kb on + strand, within GFF5290 at 161.728 kb on - strand, within GFF5290 at 161.728 kb on - strand, within GFF5290 at 161.728 kb on - strand, within GFF5290 at 161.728 kb on - strand, within GFF5290 at 161.920 kb on + strand at 161.921 kb on - strand at 161.924 kb on - strand at 161.924 kb on - strand at 162.012 kb on - strand at 162.027 kb on + strand at 162.027 kb on + strand at 162.028 kb on - strand at 162.040 kb on + strand at 162.040 kb on + strand at 162.040 kb on + strand at 162.041 kb on - strand at 162.041 kb on - strand at 162.041 kb on - strand at 162.041 kb on - strand at 162.074 kb on - strand at 162.258 kb on + strand at 162.258 kb on + strand at 162.258 kb on + strand at 162.259 kb on - strand at 162.259 kb on - strand at 162.517 kb on + strand, within GFF5291 at 162.517 kb on + strand, within GFF5291 at 162.517 kb on + strand, within GFF5291 at 162.518 kb on - strand, within GFF5291 at 162.520 kb on + strand, within GFF5291 at 162.521 kb on - strand, within GFF5291 at 162.521 kb on - strand, within GFF5291 at 162.521 kb on - strand, within GFF5291 at 162.533 kb on - strand, within GFF5291 at 162.673 kb on + strand, within GFF5291 at 162.673 kb on + strand, within GFF5291 at 162.673 kb on + strand, within GFF5291 at 162.748 kb on + strand, within GFF5291 at 162.748 kb on + strand, within GFF5291 at 162.748 kb on + strand, within GFF5291 at 162.748 kb on + strand, within GFF5291 at 162.749 kb on - strand, within GFF5291 at 162.749 kb on - strand, within GFF5291 at 162.749 kb on - strand, within GFF5291 at 162.749 kb on - strand, within GFF5291 at 162.749 kb on - strand, within GFF5291 at 162.749 kb on - strand, within GFF5291 at 162.766 kb on + strand, within GFF5291 at 162.767 kb on - strand, within GFF5291 at 162.767 kb on - strand, within GFF5291 at 162.854 kb on - strand, within GFF5291 at 162.854 kb on - strand, within GFF5291 at 162.854 kb on - strand, within GFF5291 at 162.877 kb on - strand, within GFF5291
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 160,652 + -0.4 160,667 + +0.1 160,667 + -0.0 160,667 + -1.5 160,667 + -0.6 160,667 + -0.7 160,667 + -0.5 160,668 - -0.6 160,668 - -1.0 160,668 - -0.7 160,668 - +0.5 160,668 - -1.0 160,668 - -0.3 160,670 + +0.4 160,670 + -1.1 160,671 - -0.7 160,757 + GFF5289 0.12 +0.3 161,351 + -1.7 161,352 - -0.3 161,584 + +1.3 161,585 - -1.2 161,585 - +1.0 161,585 - +0.6 161,585 - -0.7 161,677 - GFF5290 0.33 -0.3 161,677 - GFF5290 0.33 -0.5 161,727 + GFF5290 0.47 -0.4 161,727 + GFF5290 0.47 -0.5 161,727 + GFF5290 0.47 +0.3 161,727 + GFF5290 0.47 -0.7 161,728 - GFF5290 0.48 -0.4 161,728 - GFF5290 0.48 -0.4 161,728 - GFF5290 0.48 -0.1 161,728 - GFF5290 0.48 -0.5 161,920 + -0.5 161,921 - -0.7 161,924 - -0.4 161,924 - +0.2 162,012 - -0.5 162,027 + -1.6 162,027 + -0.1 162,028 - +0.6 162,040 + +2.0 162,040 + -0.6 162,040 + -0.6 162,041 - -0.4 162,041 - -0.2 162,041 - +0.1 162,041 - -0.6 162,074 - -0.5 162,258 + -0.9 162,258 + +0.0 162,258 + +1.8 162,259 - -0.0 162,259 - -0.9 162,517 + GFF5291 0.19 +1.0 162,517 + GFF5291 0.19 -0.0 162,517 + GFF5291 0.19 -0.1 162,518 - GFF5291 0.19 -0.0 162,520 + GFF5291 0.19 -0.2 162,521 - GFF5291 0.19 +0.5 162,521 - GFF5291 0.19 -0.6 162,521 - GFF5291 0.19 -1.7 162,533 - GFF5291 0.19 -0.0 162,673 + GFF5291 0.26 +1.1 162,673 + GFF5291 0.26 +0.4 162,673 + GFF5291 0.26 -0.1 162,748 + GFF5291 0.29 -0.3 162,748 + GFF5291 0.29 -1.4 162,748 + GFF5291 0.29 -0.9 162,748 + GFF5291 0.29 -0.3 162,749 - GFF5291 0.29 +0.2 162,749 - GFF5291 0.29 -0.2 162,749 - GFF5291 0.29 +0.5 162,749 - GFF5291 0.29 -0.3 162,749 - GFF5291 0.29 -0.2 162,749 - GFF5291 0.29 -0.5 162,766 + GFF5291 0.30 +0.1 162,767 - GFF5291 0.30 -1.2 162,767 - GFF5291 0.30 +1.3 162,854 - GFF5291 0.34 -0.5 162,854 - GFF5291 0.34 +0.1 162,854 - GFF5291 0.34 +1.0 162,877 - GFF5291 0.35 -1.3
Or see this region's nucleotide sequence