Strain Fitness in Variovorax sp. SCN45 around GFF5278

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5276 and GFF5277 overlap by 4 nucleotidesGFF5277 and GFF5278 are separated by 22 nucleotidesGFF5278 and GFF5279 are separated by 30 nucleotides GFF5276 - D-arabinitol 4-dehydrogenase (EC 1.1.1.11), at 144,433 to 145,869 GFF5276 GFF5277 - Sorbitol dehydrogenase (EC 1.1.1.14), at 145,866 to 146,654 GFF5277 GFF5278 - Transaldolase (EC 2.2.1.2), at 146,677 to 147,348 GFF5278 GFF5279 - Fructokinase (EC 2.7.1.4), at 147,379 to 148,347 GFF5279 Position (kb) 146 147 148Strain fitness (log2 ratio) -2 -1 0 1at 145.678 kb on + strand, within GFF5276at 145.679 kb on - strand, within GFF5276at 145.679 kb on - strand, within GFF5276at 146.043 kb on + strand, within GFF5277at 146.043 kb on + strand, within GFF5277at 146.043 kb on + strand, within GFF5277at 146.044 kb on - strand, within GFF5277at 146.044 kb on - strand, within GFF5277at 146.044 kb on - strand, within GFF5277at 146.044 kb on - strand, within GFF5277at 146.044 kb on - strand, within GFF5277at 146.337 kb on + strand, within GFF5277at 146.337 kb on + strand, within GFF5277at 146.337 kb on + strand, within GFF5277at 146.367 kb on + strand, within GFF5277at 146.367 kb on + strand, within GFF5277at 146.367 kb on + strand, within GFF5277at 146.367 kb on + strand, within GFF5277at 146.367 kb on + strand, within GFF5277at 146.368 kb on - strand, within GFF5277at 146.368 kb on - strand, within GFF5277at 146.368 kb on - strand, within GFF5277at 146.368 kb on - strand, within GFF5277at 146.368 kb on - strand, within GFF5277at 146.368 kb on - strand, within GFF5277at 146.407 kb on + strand, within GFF5277at 146.407 kb on + strand, within GFF5277at 146.408 kb on - strand, within GFF5277at 146.408 kb on - strand, within GFF5277at 146.604 kb on + strandat 146.605 kb on - strandat 146.698 kb on + strandat 146.699 kb on - strandat 146.699 kb on - strandat 146.699 kb on - strandat 146.699 kb on - strandat 147.031 kb on + strand, within GFF5278at 147.032 kb on - strand, within GFF5278at 147.077 kb on - strand, within GFF5278at 147.077 kb on - strand, within GFF5278at 147.088 kb on + strand, within GFF5278at 147.217 kb on + strand, within GFF5278at 147.217 kb on + strand, within GFF5278at 147.218 kb on - strand, within GFF5278at 147.218 kb on - strand, within GFF5278at 147.218 kb on - strand, within GFF5278at 147.218 kb on - strand, within GFF5278at 147.661 kb on + strand, within GFF5279at 147.662 kb on - strand, within GFF5279at 147.670 kb on + strand, within GFF5279at 147.670 kb on + strand, within GFF5279at 147.670 kb on + strand, within GFF5279at 147.670 kb on + strand, within GFF5279at 147.670 kb on + strand, within GFF5279at 147.671 kb on - strand, within GFF5279at 147.671 kb on - strand, within GFF5279at 147.671 kb on - strand, within GFF5279at 147.671 kb on - strand, within GFF5279at 147.671 kb on - strand, within GFF5279at 147.880 kb on + strand, within GFF5279at 148.074 kb on + strand, within GFF5279at 148.074 kb on + strand, within GFF5279at 148.075 kb on - strand, within GFF5279at 148.075 kb on - strand, within GFF5279at 148.323 kb on + strandat 148.324 kb on - strandat 148.324 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
145,678 + GFF5276 0.87 +1.4
145,679 - GFF5276 0.87 -0.5
145,679 - GFF5276 0.87 -1.4
146,043 + GFF5277 0.22 -0.3
146,043 + GFF5277 0.22 -1.0
146,043 + GFF5277 0.22 +0.9
146,044 - GFF5277 0.23 -0.7
146,044 - GFF5277 0.23 +0.3
146,044 - GFF5277 0.23 +1.5
146,044 - GFF5277 0.23 -0.9
146,044 - GFF5277 0.23 -1.1
146,337 + GFF5277 0.60 -0.5
146,337 + GFF5277 0.60 +0.0
146,337 + GFF5277 0.60 -0.0
146,367 + GFF5277 0.63 -0.5
146,367 + GFF5277 0.63 -0.6
146,367 + GFF5277 0.63 +0.3
146,367 + GFF5277 0.63 +0.1
146,367 + GFF5277 0.63 +0.0
146,368 - GFF5277 0.64 -1.2
146,368 - GFF5277 0.64 +0.4
146,368 - GFF5277 0.64 -1.2
146,368 - GFF5277 0.64 +0.6
146,368 - GFF5277 0.64 +0.2
146,368 - GFF5277 0.64 -1.5
146,407 + GFF5277 0.69 +0.5
146,407 + GFF5277 0.69 -0.5
146,408 - GFF5277 0.69 -1.1
146,408 - GFF5277 0.69 -0.0
146,604 + -0.7
146,605 - -1.2
146,698 + +1.1
146,699 - +0.1
146,699 - -0.6
146,699 - -0.0
146,699 - -0.4
147,031 + GFF5278 0.53 +0.8
147,032 - GFF5278 0.53 +0.4
147,077 - GFF5278 0.60 +0.1
147,077 - GFF5278 0.60 -1.6
147,088 + GFF5278 0.61 +0.1
147,217 + GFF5278 0.80 +0.7
147,217 + GFF5278 0.80 +0.5
147,218 - GFF5278 0.81 -0.4
147,218 - GFF5278 0.81 -2.0
147,218 - GFF5278 0.81 +0.6
147,218 - GFF5278 0.81 -1.3
147,661 + GFF5279 0.29 -0.7
147,662 - GFF5279 0.29 -0.7
147,670 + GFF5279 0.30 -1.4
147,670 + GFF5279 0.30 -1.4
147,670 + GFF5279 0.30 +1.0
147,670 + GFF5279 0.30 +1.0
147,670 + GFF5279 0.30 +1.4
147,671 - GFF5279 0.30 +1.4
147,671 - GFF5279 0.30 +1.4
147,671 - GFF5279 0.30 -0.6
147,671 - GFF5279 0.30 +0.5
147,671 - GFF5279 0.30 +0.4
147,880 + GFF5279 0.52 -0.4
148,074 + GFF5279 0.72 +1.0
148,074 + GFF5279 0.72 -0.0
148,075 - GFF5279 0.72 +1.1
148,075 - GFF5279 0.72 +0.5
148,323 + +0.1
148,324 - -0.6
148,324 - +0.1

Or see this region's nucleotide sequence