Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5199 and GFF5200 are separated by 8 nucleotides GFF5200 and GFF5201 are separated by 9 nucleotides GFF5201 and GFF5202 are separated by 52 nucleotides
GFF5199 - Galactofuranose ABC transporter, permease protein 2, at 59,221 to 60,258
GFF5199
GFF5200 - L-arabonate dehydratase (EC 4.2.1.25), at 60,267 to 62,003
GFF5200
GFF5201 - L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43), at 62,013 to 62,930
GFF5201
GFF5202 - hypothetical protein, at 62,983 to 63,261
GFF5202
Position (kb) 60
61
62
63 Strain fitness (log2 ratio) -2
-1
0
1
2 at 59.314 kb on + strand at 59.695 kb on + strand, within GFF5199 at 59.696 kb on - strand, within GFF5199 at 59.870 kb on - strand, within GFF5199 at 59.992 kb on + strand, within GFF5199 at 59.992 kb on + strand, within GFF5199 at 59.992 kb on + strand, within GFF5199 at 59.992 kb on + strand, within GFF5199 at 59.993 kb on - strand, within GFF5199 at 60.091 kb on + strand, within GFF5199 at 60.091 kb on + strand, within GFF5199 at 60.262 kb on + strand at 60.327 kb on + strand at 60.676 kb on + strand, within GFF5200 at 60.948 kb on + strand, within GFF5200 at 60.948 kb on + strand, within GFF5200 at 61.218 kb on + strand, within GFF5200 at 61.219 kb on - strand, within GFF5200 at 61.512 kb on + strand, within GFF5200 at 61.512 kb on + strand, within GFF5200 at 61.512 kb on + strand, within GFF5200 at 61.512 kb on + strand, within GFF5200 at 61.593 kb on + strand, within GFF5200 at 61.701 kb on + strand, within GFF5200 at 61.706 kb on + strand, within GFF5200 at 61.706 kb on + strand, within GFF5200 at 61.911 kb on + strand at 61.911 kb on + strand at 61.911 kb on + strand at 62.026 kb on - strand at 62.223 kb on + strand, within GFF5201 at 62.260 kb on - strand, within GFF5201 at 62.385 kb on + strand, within GFF5201 at 62.385 kb on + strand, within GFF5201 at 62.385 kb on + strand, within GFF5201 at 62.385 kb on + strand, within GFF5201 at 62.386 kb on - strand, within GFF5201 at 62.386 kb on - strand, within GFF5201 at 62.506 kb on - strand, within GFF5201 at 62.506 kb on - strand, within GFF5201 at 62.515 kb on + strand, within GFF5201 at 62.516 kb on - strand, within GFF5201 at 62.731 kb on - strand, within GFF5201 at 62.731 kb on - strand, within GFF5201 at 62.757 kb on + strand, within GFF5201 at 62.758 kb on - strand, within GFF5201
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 59,314 + +1.1 59,695 + GFF5199 0.46 -0.4 59,696 - GFF5199 0.46 +0.7 59,870 - GFF5199 0.63 -1.0 59,992 + GFF5199 0.74 +0.1 59,992 + GFF5199 0.74 -0.4 59,992 + GFF5199 0.74 +0.4 59,992 + GFF5199 0.74 -0.6 59,993 - GFF5199 0.74 -0.2 60,091 + GFF5199 0.84 -0.6 60,091 + GFF5199 0.84 +0.5 60,262 + +0.1 60,327 + -0.4 60,676 + GFF5200 0.24 +0.3 60,948 + GFF5200 0.39 -2.1 60,948 + GFF5200 0.39 -1.3 61,218 + GFF5200 0.55 +0.6 61,219 - GFF5200 0.55 -0.2 61,512 + GFF5200 0.72 +0.8 61,512 + GFF5200 0.72 +0.4 61,512 + GFF5200 0.72 +1.5 61,512 + GFF5200 0.72 -0.5 61,593 + GFF5200 0.76 +0.2 61,701 + GFF5200 0.83 +0.4 61,706 + GFF5200 0.83 +0.6 61,706 + GFF5200 0.83 +0.1 61,911 + +1.5 61,911 + +0.1 61,911 + +0.2 62,026 - -0.6 62,223 + GFF5201 0.23 +0.5 62,260 - GFF5201 0.27 +0.1 62,385 + GFF5201 0.41 +0.1 62,385 + GFF5201 0.41 +1.4 62,385 + GFF5201 0.41 +2.0 62,385 + GFF5201 0.41 +1.1 62,386 - GFF5201 0.41 +1.1 62,386 - GFF5201 0.41 +0.1 62,506 - GFF5201 0.54 -0.6 62,506 - GFF5201 0.54 +0.3 62,515 + GFF5201 0.55 +0.1 62,516 - GFF5201 0.55 -0.9 62,731 - GFF5201 0.78 -1.5 62,731 - GFF5201 0.78 -0.0 62,757 + GFF5201 0.81 -0.3 62,758 - GFF5201 0.81 -0.0
Or see this region's nucleotide sequence