Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5147 and GFF5148 are separated by 25 nucleotides
GFF5147 - Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17), at 309 to 1,205
GFF5147
GFF5148 - Taurine ABC transporter, substrate-binding protein TauA, at 1,231 to 2,241
GFF5148
Position (kb) 0
1
2 Strain fitness (log2 ratio) -2
-1
0
1
2 at 0.151 kb on + strand at 0.152 kb on - strand at 0.152 kb on - strand at 0.180 kb on - strand at 0.180 kb on - strand at 0.180 kb on - strand at 0.242 kb on - strand at 0.242 kb on - strand at 0.251 kb on + strand at 0.251 kb on + strand at 0.251 kb on + strand at 0.251 kb on + strand at 0.251 kb on + strand at 0.251 kb on + strand at 0.251 kb on + strand at 0.251 kb on + strand at 0.252 kb on - strand at 0.252 kb on - strand at 0.252 kb on - strand at 0.252 kb on - strand at 0.256 kb on + strand at 0.256 kb on + strand at 0.256 kb on + strand at 0.256 kb on + strand at 0.256 kb on + strand at 0.256 kb on + strand at 0.256 kb on + strand at 0.256 kb on + strand at 0.256 kb on + strand at 0.256 kb on + strand at 0.256 kb on + strand at 0.257 kb on - strand at 0.257 kb on - strand at 0.257 kb on - strand at 0.257 kb on - strand at 0.257 kb on - strand at 0.257 kb on - strand at 0.257 kb on - strand at 0.257 kb on - strand at 0.257 kb on - strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.296 kb on + strand at 0.297 kb on - strand at 0.297 kb on - strand at 0.297 kb on - strand at 0.297 kb on - strand at 0.297 kb on - strand at 0.297 kb on - strand at 0.297 kb on - strand at 0.297 kb on - strand at 0.297 kb on - strand at 0.297 kb on - strand at 0.367 kb on + strand at 0.367 kb on + strand at 0.367 kb on + strand at 0.367 kb on + strand at 0.367 kb on + strand at 0.368 kb on - strand at 0.368 kb on - strand at 0.368 kb on - strand at 0.409 kb on + strand, within GFF5147 at 0.409 kb on + strand, within GFF5147 at 0.409 kb on + strand, within GFF5147 at 0.409 kb on + strand, within GFF5147 at 0.409 kb on + strand, within GFF5147 at 0.410 kb on - strand, within GFF5147 at 0.410 kb on - strand, within GFF5147 at 0.410 kb on - strand, within GFF5147 at 0.410 kb on - strand, within GFF5147 at 0.410 kb on - strand, within GFF5147 at 0.410 kb on - strand, within GFF5147 at 0.484 kb on + strand, within GFF5147 at 0.485 kb on - strand, within GFF5147 at 0.657 kb on + strand, within GFF5147 at 0.657 kb on + strand, within GFF5147 at 0.657 kb on + strand, within GFF5147 at 0.657 kb on + strand, within GFF5147 at 0.657 kb on + strand, within GFF5147 at 0.658 kb on - strand, within GFF5147 at 0.658 kb on - strand, within GFF5147 at 0.658 kb on - strand, within GFF5147 at 0.658 kb on - strand, within GFF5147 at 0.658 kb on - strand, within GFF5147 at 0.658 kb on - strand, within GFF5147 at 0.678 kb on + strand, within GFF5147 at 0.678 kb on + strand, within GFF5147 at 0.678 kb on + strand, within GFF5147 at 0.678 kb on + strand, within GFF5147 at 0.679 kb on - strand, within GFF5147 at 0.679 kb on - strand, within GFF5147 at 0.679 kb on - strand, within GFF5147 at 0.679 kb on - strand, within GFF5147 at 0.679 kb on - strand, within GFF5147 at 0.679 kb on - strand, within GFF5147 at 0.679 kb on - strand, within GFF5147 at 0.831 kb on + strand, within GFF5147 at 0.831 kb on + strand, within GFF5147 at 0.831 kb on + strand, within GFF5147 at 0.831 kb on + strand, within GFF5147 at 0.831 kb on + strand, within GFF5147 at 0.831 kb on + strand, within GFF5147 at 0.831 kb on + strand, within GFF5147 at 0.831 kb on + strand, within GFF5147 at 0.831 kb on + strand, within GFF5147 at 0.831 kb on + strand, within GFF5147 at 0.831 kb on + strand, within GFF5147 at 0.832 kb on - strand, within GFF5147 at 0.832 kb on - strand, within GFF5147 at 0.832 kb on - strand, within GFF5147 at 0.832 kb on - strand, within GFF5147 at 0.832 kb on - strand, within GFF5147 at 0.832 kb on - strand, within GFF5147 at 0.832 kb on - strand, within GFF5147 at 0.832 kb on - strand, within GFF5147 at 0.843 kb on + strand, within GFF5147 at 0.843 kb on + strand, within GFF5147 at 0.843 kb on + strand, within GFF5147 at 0.844 kb on - strand, within GFF5147 at 0.844 kb on - strand, within GFF5147 at 0.844 kb on - strand, within GFF5147 at 1.071 kb on + strand, within GFF5147 at 1.072 kb on - strand, within GFF5147 at 1.348 kb on + strand, within GFF5148 at 1.348 kb on + strand, within GFF5148 at 1.586 kb on - strand, within GFF5148 at 1.586 kb on - strand, within GFF5148 at 1.588 kb on + strand, within GFF5148 at 1.588 kb on + strand, within GFF5148 at 1.589 kb on - strand, within GFF5148 at 1.589 kb on - strand, within GFF5148 at 1.589 kb on - strand, within GFF5148 at 1.589 kb on - strand, within GFF5148 at 1.888 kb on + strand, within GFF5148 at 1.888 kb on + strand, within GFF5148 at 1.888 kb on + strand, within GFF5148 at 1.889 kb on - strand, within GFF5148 at 1.889 kb on - strand, within GFF5148 at 1.928 kb on - strand, within GFF5148 at 1.928 kb on - strand, within GFF5148 at 1.966 kb on + strand, within GFF5148 at 1.966 kb on + strand, within GFF5148 at 1.966 kb on + strand, within GFF5148 at 1.966 kb on + strand, within GFF5148 at 1.966 kb on + strand, within GFF5148 at 1.967 kb on - strand, within GFF5148 at 1.967 kb on - strand, within GFF5148 at 2.041 kb on + strand, within GFF5148 at 2.041 kb on + strand, within GFF5148 at 2.041 kb on + strand, within GFF5148 at 2.041 kb on + strand, within GFF5148 at 2.041 kb on + strand, within GFF5148 at 2.041 kb on + strand, within GFF5148 at 2.041 kb on + strand, within GFF5148 at 2.041 kb on + strand, within GFF5148 at 2.041 kb on + strand, within GFF5148 at 2.041 kb on + strand, within GFF5148 at 2.041 kb on + strand, within GFF5148 at 2.042 kb on - strand, within GFF5148 at 2.042 kb on - strand, within GFF5148 at 2.042 kb on - strand, within GFF5148 at 2.042 kb on - strand, within GFF5148 at 2.042 kb on - strand, within GFF5148 at 2.042 kb on - strand, within GFF5148 at 2.042 kb on - strand, within GFF5148 at 2.042 kb on - strand, within GFF5148 at 2.042 kb on - strand, within GFF5148 at 2.137 kb on + strand, within GFF5148 at 2.137 kb on + strand, within GFF5148 at 2.137 kb on + strand, within GFF5148 at 2.137 kb on + strand, within GFF5148 at 2.137 kb on + strand, within GFF5148 at 2.137 kb on + strand, within GFF5148 at 2.137 kb on + strand, within GFF5148 at 2.138 kb on - strand, within GFF5148 at 2.138 kb on - strand, within GFF5148 at 2.138 kb on - strand, within GFF5148 at 2.203 kb on + strand at 2.203 kb on + strand at 2.203 kb on + strand at 2.204 kb on - strand at 2.204 kb on - strand at 2.204 kb on - strand at 2.204 kb on - strand at 2.204 kb on - strand at 2.204 kb on - strand at 2.204 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 151 + +0.3 152 - -0.2 152 - -0.2 180 - -0.8 180 - -0.0 180 - +1.2 242 - -0.2 242 - -0.5 251 + +0.5 251 + +1.0 251 + +1.0 251 + -0.0 251 + -0.1 251 + +0.2 251 + -0.2 251 + -0.3 252 - -0.6 252 - -0.7 252 - -0.0 252 - +0.5 256 + -0.9 256 + -0.6 256 + -0.1 256 + +1.1 256 + -0.9 256 + +0.1 256 + -0.1 256 + -1.6 256 + +0.5 256 + +0.2 256 + +0.1 257 - +0.4 257 - +1.3 257 - +0.1 257 - -0.4 257 - -1.1 257 - +0.0 257 - -0.7 257 - +0.1 257 - +0.6 296 + +1.2 296 + +1.4 296 + +0.3 296 + -0.6 296 + +0.1 296 + -0.9 296 + -0.9 296 + -0.4 296 + +0.1 296 + -0.6 296 + +0.4 296 + +0.7 296 + +0.1 296 + -0.5 296 + -0.2 296 + -0.4 297 - -0.9 297 - -0.2 297 - +0.3 297 - -0.4 297 - -0.4 297 - +0.2 297 - -0.8 297 - -0.0 297 - -0.2 297 - -0.5 367 + -0.3 367 + -0.1 367 + +0.3 367 + -0.2 367 + -0.0 368 - -0.1 368 - +0.2 368 - +0.8 409 + GFF5147 0.11 -0.1 409 + GFF5147 0.11 -0.4 409 + GFF5147 0.11 -0.3 409 + GFF5147 0.11 +1.0 409 + GFF5147 0.11 -1.0 410 - GFF5147 0.11 -1.2 410 - GFF5147 0.11 -0.0 410 - GFF5147 0.11 -2.6 410 - GFF5147 0.11 -0.7 410 - GFF5147 0.11 -0.6 410 - GFF5147 0.11 -0.5 484 + GFF5147 0.20 +0.8 485 - GFF5147 0.20 -0.6 657 + GFF5147 0.39 -0.6 657 + GFF5147 0.39 +0.4 657 + GFF5147 0.39 -0.0 657 + GFF5147 0.39 -2.0 657 + GFF5147 0.39 -1.2 658 - GFF5147 0.39 +2.5 658 - GFF5147 0.39 +0.0 658 - GFF5147 0.39 +0.4 658 - GFF5147 0.39 -0.7 658 - GFF5147 0.39 +0.5 658 - GFF5147 0.39 -0.8 678 + GFF5147 0.41 +0.6 678 + GFF5147 0.41 -0.9 678 + GFF5147 0.41 +0.1 678 + GFF5147 0.41 -0.4 679 - GFF5147 0.41 -0.1 679 - GFF5147 0.41 -0.0 679 - GFF5147 0.41 +0.4 679 - GFF5147 0.41 +0.1 679 - GFF5147 0.41 -0.0 679 - GFF5147 0.41 +0.1 679 - GFF5147 0.41 -0.2 831 + GFF5147 0.58 -0.7 831 + GFF5147 0.58 -0.4 831 + GFF5147 0.58 -0.5 831 + GFF5147 0.58 -0.9 831 + GFF5147 0.58 -2.0 831 + GFF5147 0.58 -0.7 831 + GFF5147 0.58 +0.4 831 + GFF5147 0.58 +0.0 831 + GFF5147 0.58 -0.9 831 + GFF5147 0.58 +0.4 831 + GFF5147 0.58 +0.7 832 - GFF5147 0.58 -1.0 832 - GFF5147 0.58 -0.4 832 - GFF5147 0.58 -1.5 832 - GFF5147 0.58 -1.0 832 - GFF5147 0.58 +0.2 832 - GFF5147 0.58 -1.0 832 - GFF5147 0.58 +0.4 832 - GFF5147 0.58 -0.4 843 + GFF5147 0.60 -0.0 843 + GFF5147 0.60 -0.2 843 + GFF5147 0.60 -0.8 844 - GFF5147 0.60 -0.8 844 - GFF5147 0.60 -0.1 844 - GFF5147 0.60 +0.0 1,071 + GFF5147 0.85 -1.9 1,072 - GFF5147 0.85 +0.5 1,348 + GFF5148 0.12 -1.0 1,348 + GFF5148 0.12 -0.5 1,586 - GFF5148 0.35 -0.2 1,586 - GFF5148 0.35 +1.7 1,588 + GFF5148 0.35 +0.1 1,588 + GFF5148 0.35 -0.1 1,589 - GFF5148 0.35 +1.7 1,589 - GFF5148 0.35 -2.0 1,589 - GFF5148 0.35 -0.7 1,589 - GFF5148 0.35 -0.3 1,888 + GFF5148 0.65 -0.2 1,888 + GFF5148 0.65 +0.0 1,888 + GFF5148 0.65 +0.3 1,889 - GFF5148 0.65 -0.6 1,889 - GFF5148 0.65 -0.1 1,928 - GFF5148 0.69 -1.2 1,928 - GFF5148 0.69 +0.6 1,966 + GFF5148 0.73 -0.2 1,966 + GFF5148 0.73 -0.6 1,966 + GFF5148 0.73 -0.1 1,966 + GFF5148 0.73 +0.2 1,966 + GFF5148 0.73 -0.7 1,967 - GFF5148 0.73 -1.0 1,967 - GFF5148 0.73 -0.2 2,041 + GFF5148 0.80 -0.5 2,041 + GFF5148 0.80 -1.2 2,041 + GFF5148 0.80 -1.0 2,041 + GFF5148 0.80 -0.3 2,041 + GFF5148 0.80 -0.1 2,041 + GFF5148 0.80 +1.2 2,041 + GFF5148 0.80 -0.9 2,041 + GFF5148 0.80 +1.1 2,041 + GFF5148 0.80 -0.4 2,041 + GFF5148 0.80 -0.4 2,041 + GFF5148 0.80 +0.2 2,042 - GFF5148 0.80 -0.1 2,042 - GFF5148 0.80 +0.6 2,042 - GFF5148 0.80 -1.4 2,042 - GFF5148 0.80 -0.6 2,042 - GFF5148 0.80 -0.2 2,042 - GFF5148 0.80 -2.1 2,042 - GFF5148 0.80 -0.6 2,042 - GFF5148 0.80 -0.7 2,042 - GFF5148 0.80 -1.0 2,137 + GFF5148 0.90 -0.1 2,137 + GFF5148 0.90 +0.1 2,137 + GFF5148 0.90 -0.7 2,137 + GFF5148 0.90 -0.1 2,137 + GFF5148 0.90 -0.4 2,137 + GFF5148 0.90 +1.4 2,137 + GFF5148 0.90 -0.4 2,138 - GFF5148 0.90 -1.0 2,138 - GFF5148 0.90 +0.6 2,138 - GFF5148 0.90 +1.5 2,203 + -1.7 2,203 + -0.1 2,203 + +0.7 2,204 - -0.4 2,204 - +0.6 2,204 - -0.6 2,204 - -1.1 2,204 - -0.5 2,204 - -0.9 2,204 - -1.9
Or see this region's nucleotide sequence