Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5111 and GFF5112 are separated by 9 nucleotides GFF5112 and GFF5113 are separated by 15 nucleotides GFF5113 and GFF5114 are separated by 89 nucleotides
GFF5111 - Permease of the drug/metabolite transporter (DMT) superfamily, at 212,928 to 213,818
GFF5111
GFF5112 - Glutathione peroxidase (EC 1.11.1.9) @ Thioredoxin peroxidase (EC 1.11.1.15), at 213,828 to 214,316
GFF5112
GFF5113 - hypothetical protein, at 214,332 to 214,775
GFF5113
GFF5114 - Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF, at 214,865 to 216,097
GFF5114
Position (kb) 214
215 Strain fitness (log2 ratio) -2
-1
0
1
2 at 213.609 kb on + strand, within GFF5111 at 213.610 kb on - strand, within GFF5111 at 213.840 kb on + strand at 213.840 kb on + strand at 213.841 kb on - strand at 213.981 kb on + strand, within GFF5112 at 213.981 kb on + strand, within GFF5112 at 213.981 kb on + strand, within GFF5112 at 213.999 kb on - strand, within GFF5112 at 213.999 kb on - strand, within GFF5112 at 214.083 kb on + strand, within GFF5112 at 214.083 kb on + strand, within GFF5112 at 214.084 kb on - strand, within GFF5112 at 214.084 kb on - strand, within GFF5112 at 214.084 kb on - strand, within GFF5112 at 214.084 kb on - strand, within GFF5112 at 214.146 kb on + strand, within GFF5112 at 214.251 kb on + strand, within GFF5112 at 214.252 kb on - strand, within GFF5112 at 214.333 kb on + strand at 214.333 kb on + strand at 214.333 kb on + strand at 214.333 kb on + strand at 214.333 kb on + strand at 214.334 kb on - strand at 214.334 kb on - strand at 214.334 kb on - strand at 214.334 kb on - strand at 214.334 kb on - strand at 214.334 kb on - strand at 214.334 kb on - strand at 214.334 kb on - strand at 214.424 kb on - strand, within GFF5113 at 214.424 kb on - strand, within GFF5113 at 214.424 kb on - strand, within GFF5113 at 214.534 kb on + strand, within GFF5113 at 214.534 kb on + strand, within GFF5113 at 214.534 kb on + strand, within GFF5113 at 214.534 kb on + strand, within GFF5113 at 214.534 kb on + strand, within GFF5113 at 214.535 kb on - strand, within GFF5113 at 214.535 kb on - strand, within GFF5113 at 214.633 kb on + strand, within GFF5113 at 214.634 kb on - strand, within GFF5113 at 214.722 kb on + strand, within GFF5113 at 214.722 kb on + strand, within GFF5113 at 214.723 kb on - strand, within GFF5113 at 214.723 kb on - strand, within GFF5113 at 215.025 kb on + strand, within GFF5114 at 215.052 kb on + strand, within GFF5114 at 215.052 kb on + strand, within GFF5114 at 215.052 kb on + strand, within GFF5114 at 215.052 kb on + strand, within GFF5114 at 215.053 kb on - strand, within GFF5114 at 215.053 kb on - strand, within GFF5114 at 215.053 kb on - strand, within GFF5114 at 215.053 kb on - strand, within GFF5114 at 215.298 kb on + strand, within GFF5114 at 215.299 kb on - strand, within GFF5114 at 215.299 kb on - strand, within GFF5114 at 215.299 kb on - strand, within GFF5114 at 215.299 kb on - strand, within GFF5114 at 215.383 kb on - strand, within GFF5114 at 215.397 kb on + strand, within GFF5114 at 215.397 kb on + strand, within GFF5114 at 215.397 kb on + strand, within GFF5114 at 215.398 kb on - strand, within GFF5114
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 213,609 + GFF5111 0.76 -0.8 213,610 - GFF5111 0.77 +0.1 213,840 + -0.5 213,840 + +0.3 213,841 - -0.2 213,981 + GFF5112 0.31 +0.3 213,981 + GFF5112 0.31 -0.7 213,981 + GFF5112 0.31 +0.5 213,999 - GFF5112 0.35 -1.3 213,999 - GFF5112 0.35 -2.5 214,083 + GFF5112 0.52 +0.8 214,083 + GFF5112 0.52 -0.3 214,084 - GFF5112 0.52 -0.7 214,084 - GFF5112 0.52 +1.0 214,084 - GFF5112 0.52 +0.8 214,084 - GFF5112 0.52 +0.5 214,146 + GFF5112 0.65 +0.4 214,251 + GFF5112 0.87 -0.2 214,252 - GFF5112 0.87 -0.1 214,333 + +1.4 214,333 + -0.6 214,333 + +0.5 214,333 + -0.5 214,333 + -0.3 214,334 - +0.6 214,334 - -0.3 214,334 - -0.2 214,334 - -1.5 214,334 - -0.6 214,334 - +0.6 214,334 - +2.0 214,334 - +1.1 214,424 - GFF5113 0.21 -0.8 214,424 - GFF5113 0.21 +0.4 214,424 - GFF5113 0.21 +0.2 214,534 + GFF5113 0.45 -1.0 214,534 + GFF5113 0.45 -0.6 214,534 + GFF5113 0.45 -0.0 214,534 + GFF5113 0.45 -1.0 214,534 + GFF5113 0.45 +0.3 214,535 - GFF5113 0.46 -0.0 214,535 - GFF5113 0.46 +0.1 214,633 + GFF5113 0.68 -0.4 214,634 - GFF5113 0.68 +0.3 214,722 + GFF5113 0.88 +0.8 214,722 + GFF5113 0.88 +0.2 214,723 - GFF5113 0.88 +0.1 214,723 - GFF5113 0.88 -0.4 215,025 + GFF5114 0.13 -2.0 215,052 + GFF5114 0.15 +1.2 215,052 + GFF5114 0.15 -0.6 215,052 + GFF5114 0.15 +1.0 215,052 + GFF5114 0.15 +0.1 215,053 - GFF5114 0.15 +0.2 215,053 - GFF5114 0.15 +1.6 215,053 - GFF5114 0.15 -0.0 215,053 - GFF5114 0.15 -0.3 215,298 + GFF5114 0.35 -1.7 215,299 - GFF5114 0.35 -1.0 215,299 - GFF5114 0.35 -0.9 215,299 - GFF5114 0.35 +0.3 215,299 - GFF5114 0.35 +0.6 215,383 - GFF5114 0.42 +0.3 215,397 + GFF5114 0.43 +0.0 215,397 + GFF5114 0.43 -0.4 215,397 + GFF5114 0.43 -0.2 215,398 - GFF5114 0.43 -0.4
Or see this region's nucleotide sequence