Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5028 and GFF5029 are separated by 52 nucleotides GFF5029 and GFF5030 are separated by 46 nucleotides GFF5030 and GFF5031 are separated by 54 nucleotides
GFF5028 - hypothetical protein, at 130,320 to 130,739
GFF5028
GFF5029 - Transcriptional regulator, IclR family, at 130,792 to 131,652
GFF5029
GFF5030 - no description, at 131,699 to 131,815
GFF5030
GFF5031 - ABC-type spermidine/putrescine transport systems, ATPase components, at 131,870 to 132,943
GFF5031
Position (kb) 131
132 Strain fitness (log2 ratio) -2
-1
0
1
2 at 130.717 kb on + strand at 130.718 kb on - strand at 131.070 kb on - strand, within GFF5029 at 131.070 kb on - strand, within GFF5029 at 131.108 kb on + strand, within GFF5029 at 131.108 kb on + strand, within GFF5029 at 131.108 kb on + strand, within GFF5029 at 131.109 kb on - strand, within GFF5029 at 131.109 kb on - strand, within GFF5029 at 131.109 kb on - strand, within GFF5029 at 131.109 kb on - strand, within GFF5029 at 131.109 kb on - strand, within GFF5029 at 131.109 kb on - strand, within GFF5029 at 131.120 kb on + strand, within GFF5029 at 131.120 kb on + strand, within GFF5029 at 131.120 kb on + strand, within GFF5029 at 131.121 kb on - strand, within GFF5029 at 131.121 kb on - strand, within GFF5029 at 131.121 kb on - strand, within GFF5029 at 131.121 kb on - strand, within GFF5029 at 131.121 kb on - strand, within GFF5029 at 131.129 kb on + strand, within GFF5029 at 131.129 kb on + strand, within GFF5029 at 131.129 kb on + strand, within GFF5029 at 131.129 kb on + strand, within GFF5029 at 131.130 kb on - strand, within GFF5029 at 131.444 kb on + strand, within GFF5029 at 131.652 kb on + strand at 131.652 kb on + strand at 131.653 kb on - strand at 131.657 kb on - strand at 131.695 kb on + strand at 131.695 kb on + strand at 131.695 kb on + strand at 131.773 kb on + strand, within GFF5030 at 131.774 kb on - strand, within GFF5030 at 131.906 kb on + strand at 131.906 kb on + strand at 131.907 kb on - strand at 132.119 kb on + strand, within GFF5031 at 132.119 kb on + strand, within GFF5031 at 132.119 kb on + strand, within GFF5031 at 132.119 kb on + strand, within GFF5031 at 132.119 kb on + strand, within GFF5031 at 132.119 kb on + strand, within GFF5031 at 132.119 kb on + strand, within GFF5031 at 132.119 kb on + strand, within GFF5031 at 132.119 kb on + strand, within GFF5031 at 132.119 kb on + strand, within GFF5031 at 132.120 kb on - strand, within GFF5031 at 132.120 kb on - strand, within GFF5031 at 132.120 kb on - strand, within GFF5031 at 132.120 kb on - strand, within GFF5031 at 132.120 kb on - strand, within GFF5031 at 132.120 kb on - strand, within GFF5031 at 132.533 kb on + strand, within GFF5031 at 132.533 kb on + strand, within GFF5031 at 132.533 kb on + strand, within GFF5031 at 132.533 kb on + strand, within GFF5031 at 132.533 kb on + strand, within GFF5031 at 132.533 kb on + strand, within GFF5031 at 132.533 kb on + strand, within GFF5031 at 132.533 kb on + strand, within GFF5031 at 132.533 kb on + strand, within GFF5031 at 132.533 kb on + strand, within GFF5031 at 132.534 kb on - strand, within GFF5031 at 132.534 kb on - strand, within GFF5031 at 132.534 kb on - strand, within GFF5031 at 132.534 kb on - strand, within GFF5031 at 132.534 kb on - strand, within GFF5031 at 132.534 kb on - strand, within GFF5031 at 132.534 kb on - strand, within GFF5031 at 132.534 kb on - strand, within GFF5031
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 130,717 + -1.7 130,718 - +0.4 131,070 - GFF5029 0.32 +0.3 131,070 - GFF5029 0.32 -0.4 131,108 + GFF5029 0.37 -0.5 131,108 + GFF5029 0.37 +0.5 131,108 + GFF5029 0.37 -0.5 131,109 - GFF5029 0.37 -0.4 131,109 - GFF5029 0.37 +0.2 131,109 - GFF5029 0.37 -0.7 131,109 - GFF5029 0.37 -0.3 131,109 - GFF5029 0.37 -0.4 131,109 - GFF5029 0.37 -1.1 131,120 + GFF5029 0.38 +0.3 131,120 + GFF5029 0.38 -0.1 131,120 + GFF5029 0.38 -0.0 131,121 - GFF5029 0.38 -0.6 131,121 - GFF5029 0.38 -0.4 131,121 - GFF5029 0.38 -0.1 131,121 - GFF5029 0.38 +0.3 131,121 - GFF5029 0.38 -0.2 131,129 + GFF5029 0.39 -0.7 131,129 + GFF5029 0.39 +0.7 131,129 + GFF5029 0.39 -0.3 131,129 + GFF5029 0.39 -0.6 131,130 - GFF5029 0.39 -0.8 131,444 + GFF5029 0.76 +1.8 131,652 + -0.1 131,652 + +0.8 131,653 - -0.6 131,657 - +0.2 131,695 + -1.1 131,695 + -0.0 131,695 + +0.0 131,773 + GFF5030 0.63 -2.2 131,774 - GFF5030 0.64 +0.2 131,906 + -0.7 131,906 + -0.2 131,907 - -0.2 132,119 + GFF5031 0.23 -0.6 132,119 + GFF5031 0.23 -0.3 132,119 + GFF5031 0.23 -0.8 132,119 + GFF5031 0.23 +0.2 132,119 + GFF5031 0.23 -0.5 132,119 + GFF5031 0.23 -0.3 132,119 + GFF5031 0.23 -0.2 132,119 + GFF5031 0.23 -0.3 132,119 + GFF5031 0.23 -0.1 132,119 + GFF5031 0.23 +0.3 132,120 - GFF5031 0.23 -0.1 132,120 - GFF5031 0.23 -0.1 132,120 - GFF5031 0.23 -0.4 132,120 - GFF5031 0.23 -0.8 132,120 - GFF5031 0.23 -1.0 132,120 - GFF5031 0.23 -0.5 132,533 + GFF5031 0.62 -0.3 132,533 + GFF5031 0.62 -0.6 132,533 + GFF5031 0.62 +0.4 132,533 + GFF5031 0.62 +0.4 132,533 + GFF5031 0.62 +1.2 132,533 + GFF5031 0.62 +0.2 132,533 + GFF5031 0.62 +0.4 132,533 + GFF5031 0.62 -1.3 132,533 + GFF5031 0.62 +1.2 132,533 + GFF5031 0.62 -0.0 132,534 - GFF5031 0.62 +0.8 132,534 - GFF5031 0.62 +2.0 132,534 - GFF5031 0.62 +0.1 132,534 - GFF5031 0.62 -1.6 132,534 - GFF5031 0.62 -0.0 132,534 - GFF5031 0.62 +0.6 132,534 - GFF5031 0.62 -0.5 132,534 - GFF5031 0.62 -0.9
Or see this region's nucleotide sequence