Strain Fitness in Variovorax sp. SCN45 around GFF4953

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4952 and GFF4953 are separated by 126 nucleotidesGFF4953 and GFF4954 are separated by 28 nucleotidesGFF4954 and GFF4955 overlap by 4 nucleotides GFF4952 - DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes, at 48,479 to 49,333 GFF4952 GFF4953 - Beta-galactosidase (EC 3.2.1.23), at 49,460 to 54,172 GFF4953 GFF4954 - no description, at 54,201 to 54,914 GFF4954 GFF4955 - hypothetical protein, at 54,911 to 56,917 GFF4955 Position (kb) 49 50 51 52 53 54 55Strain fitness (log2 ratio) -2 -1 0 1 2 3at 48.478 kb on + strandat 48.478 kb on - strandat 48.479 kb on - strandat 48.479 kb on - strandat 48.479 kb on - strandat 48.653 kb on + strand, within GFF4952at 48.653 kb on + strand, within GFF4952at 48.653 kb on + strand, within GFF4952at 48.654 kb on - strand, within GFF4952at 48.654 kb on - strand, within GFF4952at 48.654 kb on - strand, within GFF4952at 48.654 kb on - strand, within GFF4952at 48.734 kb on + strand, within GFF4952at 49.206 kb on - strand, within GFF4952at 49.307 kb on + strandat 49.307 kb on + strandat 49.307 kb on + strandat 49.307 kb on + strandat 49.307 kb on + strandat 49.308 kb on - strandat 49.331 kb on + strandat 49.332 kb on - strandat 49.375 kb on - strandat 49.375 kb on - strandat 49.475 kb on + strandat 49.476 kb on - strandat 49.476 kb on - strandat 49.634 kb on + strandat 49.634 kb on + strandat 49.634 kb on + strandat 49.634 kb on + strandat 49.635 kb on - strandat 49.850 kb on + strandat 49.850 kb on + strandat 49.850 kb on + strandat 49.895 kb on + strandat 49.895 kb on + strandat 49.895 kb on + strandat 49.896 kb on - strandat 49.896 kb on - strandat 49.970 kb on + strand, within GFF4953at 49.970 kb on + strand, within GFF4953at 49.970 kb on + strand, within GFF4953at 49.971 kb on - strand, within GFF4953at 50.117 kb on + strand, within GFF4953at 50.123 kb on + strand, within GFF4953at 50.124 kb on - strand, within GFF4953at 50.124 kb on - strand, within GFF4953at 50.124 kb on - strand, within GFF4953at 50.384 kb on + strand, within GFF4953at 50.384 kb on + strand, within GFF4953at 50.385 kb on - strand, within GFF4953at 50.450 kb on + strand, within GFF4953at 50.450 kb on + strand, within GFF4953at 50.450 kb on + strand, within GFF4953at 50.450 kb on + strand, within GFF4953at 50.450 kb on + strand, within GFF4953at 50.450 kb on + strand, within GFF4953at 50.450 kb on + strand, within GFF4953at 50.450 kb on + strand, within GFF4953at 50.451 kb on - strand, within GFF4953at 50.451 kb on - strand, within GFF4953at 50.451 kb on - strand, within GFF4953at 50.451 kb on - strand, within GFF4953at 50.456 kb on + strand, within GFF4953at 50.456 kb on + strand, within GFF4953at 50.456 kb on + strand, within GFF4953at 50.457 kb on - strand, within GFF4953at 50.457 kb on - strand, within GFF4953at 50.523 kb on - strand, within GFF4953at 50.543 kb on + strand, within GFF4953at 50.543 kb on + strand, within GFF4953at 50.543 kb on + strand, within GFF4953at 50.543 kb on + strand, within GFF4953at 50.543 kb on + strand, within GFF4953at 50.924 kb on + strand, within GFF4953at 50.925 kb on - strand, within GFF4953at 50.925 kb on - strand, within GFF4953at 50.925 kb on - strand, within GFF4953at 50.987 kb on + strand, within GFF4953at 50.987 kb on + strand, within GFF4953at 50.987 kb on + strand, within GFF4953at 50.988 kb on - strand, within GFF4953at 51.023 kb on + strand, within GFF4953at 51.024 kb on - strand, within GFF4953at 51.050 kb on + strand, within GFF4953at 51.050 kb on + strand, within GFF4953at 51.051 kb on - strand, within GFF4953at 51.051 kb on - strand, within GFF4953at 51.275 kb on + strand, within GFF4953at 51.275 kb on + strand, within GFF4953at 51.275 kb on + strand, within GFF4953at 51.276 kb on - strand, within GFF4953at 51.276 kb on - strand, within GFF4953at 51.276 kb on - strand, within GFF4953at 51.276 kb on - strand, within GFF4953at 51.510 kb on - strand, within GFF4953at 51.510 kb on - strand, within GFF4953at 51.510 kb on - strand, within GFF4953at 51.642 kb on - strand, within GFF4953at 51.840 kb on - strand, within GFF4953at 51.845 kb on + strand, within GFF4953at 51.845 kb on + strand, within GFF4953at 51.846 kb on - strand, within GFF4953at 51.846 kb on - strand, within GFF4953at 51.846 kb on - strand, within GFF4953at 51.846 kb on - strand, within GFF4953at 51.846 kb on - strand, within GFF4953at 51.846 kb on - strand, within GFF4953at 51.846 kb on - strand, within GFF4953at 51.846 kb on - strand, within GFF4953at 51.846 kb on - strand, within GFF4953at 51.851 kb on + strand, within GFF4953at 51.852 kb on - strand, within GFF4953at 51.852 kb on - strand, within GFF4953at 51.852 kb on - strand, within GFF4953at 51.852 kb on - strand, within GFF4953at 51.869 kb on + strand, within GFF4953at 51.914 kb on + strand, within GFF4953at 51.914 kb on + strand, within GFF4953at 51.914 kb on + strand, within GFF4953at 51.917 kb on + strand, within GFF4953at 51.917 kb on + strand, within GFF4953at 51.917 kb on + strand, within GFF4953at 51.918 kb on - strand, within GFF4953at 51.918 kb on - strand, within GFF4953at 51.918 kb on - strand, within GFF4953at 51.918 kb on - strand, within GFF4953at 51.918 kb on - strand, within GFF4953at 51.923 kb on + strand, within GFF4953at 51.923 kb on + strand, within GFF4953at 51.923 kb on + strand, within GFF4953at 51.924 kb on - strand, within GFF4953at 52.209 kb on - strand, within GFF4953at 52.385 kb on + strand, within GFF4953at 52.385 kb on + strand, within GFF4953at 52.386 kb on - strand, within GFF4953at 52.530 kb on - strand, within GFF4953at 52.530 kb on - strand, within GFF4953at 52.764 kb on - strand, within GFF4953at 52.764 kb on - strand, within GFF4953at 52.764 kb on - strand, within GFF4953at 52.814 kb on + strand, within GFF4953at 52.816 kb on - strand, within GFF4953at 52.868 kb on + strand, within GFF4953at 52.868 kb on + strand, within GFF4953at 52.869 kb on - strand, within GFF4953at 53.048 kb on + strand, within GFF4953at 53.049 kb on - strand, within GFF4953at 53.084 kb on + strand, within GFF4953at 53.084 kb on + strand, within GFF4953at 53.084 kb on + strand, within GFF4953at 53.084 kb on + strand, within GFF4953at 53.084 kb on + strand, within GFF4953at 53.084 kb on + strand, within GFF4953at 53.084 kb on + strand, within GFF4953at 53.085 kb on - strand, within GFF4953at 53.085 kb on - strand, within GFF4953at 53.085 kb on - strand, within GFF4953at 53.919 kb on - strandat 53.922 kb on + strandat 53.923 kb on - strandat 53.923 kb on - strandat 53.923 kb on - strandat 54.617 kb on - strand, within GFF4954at 54.617 kb on - strand, within GFF4954at 54.797 kb on - strand, within GFF4954at 54.896 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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48,478 + -0.8
48,478 - +0.3
48,479 - -1.4
48,479 - -0.2
48,479 - +0.1
48,653 + GFF4952 0.20 -0.6
48,653 + GFF4952 0.20 -0.3
48,653 + GFF4952 0.20 +0.4
48,654 - GFF4952 0.20 +0.1
48,654 - GFF4952 0.20 -1.8
48,654 - GFF4952 0.20 -0.1
48,654 - GFF4952 0.20 -0.7
48,734 + GFF4952 0.30 -0.6
49,206 - GFF4952 0.85 -0.9
49,307 + -0.6
49,307 + +0.2
49,307 + -0.8
49,307 + -0.0
49,307 + +0.6
49,308 - -0.1
49,331 + +0.3
49,332 - +0.2
49,375 - -0.2
49,375 - -0.9
49,475 + +0.0
49,476 - -1.1
49,476 - +0.2
49,634 + -0.0
49,634 + -0.3
49,634 + -0.3
49,634 + +0.2
49,635 - +2.0
49,850 + +3.0
49,850 + -0.3
49,850 + +0.3
49,895 + +0.2
49,895 + -0.6
49,895 + +0.6
49,896 - +0.6
49,896 - +0.2
49,970 + GFF4953 0.11 -0.8
49,970 + GFF4953 0.11 +0.4
49,970 + GFF4953 0.11 -0.0
49,971 - GFF4953 0.11 +0.2
50,117 + GFF4953 0.14 +1.4
50,123 + GFF4953 0.14 -1.0
50,124 - GFF4953 0.14 +0.6
50,124 - GFF4953 0.14 -0.4
50,124 - GFF4953 0.14 -1.2
50,384 + GFF4953 0.20 -0.1
50,384 + GFF4953 0.20 -0.0
50,385 - GFF4953 0.20 -0.5
50,450 + GFF4953 0.21 -0.7
50,450 + GFF4953 0.21 -0.6
50,450 + GFF4953 0.21 -1.2
50,450 + GFF4953 0.21 -0.8
50,450 + GFF4953 0.21 +0.0
50,450 + GFF4953 0.21 +0.3
50,450 + GFF4953 0.21 +1.0
50,450 + GFF4953 0.21 -1.9
50,451 - GFF4953 0.21 +0.8
50,451 - GFF4953 0.21 -0.2
50,451 - GFF4953 0.21 -1.3
50,451 - GFF4953 0.21 -0.7
50,456 + GFF4953 0.21 +1.1
50,456 + GFF4953 0.21 -0.3
50,456 + GFF4953 0.21 +0.3
50,457 - GFF4953 0.21 -0.0
50,457 - GFF4953 0.21 +0.6
50,523 - GFF4953 0.23 -2.0
50,543 + GFF4953 0.23 +0.2
50,543 + GFF4953 0.23 -1.2
50,543 + GFF4953 0.23 -0.5
50,543 + GFF4953 0.23 +0.5
50,543 + GFF4953 0.23 +0.1
50,924 + GFF4953 0.31 -0.5
50,925 - GFF4953 0.31 +0.5
50,925 - GFF4953 0.31 -1.6
50,925 - GFF4953 0.31 -1.5
50,987 + GFF4953 0.32 +1.0
50,987 + GFF4953 0.32 -0.2
50,987 + GFF4953 0.32 +0.6
50,988 - GFF4953 0.32 -0.4
51,023 + GFF4953 0.33 +0.7
51,024 - GFF4953 0.33 +3.5
51,050 + GFF4953 0.34 +0.0
51,050 + GFF4953 0.34 -2.7
51,051 - GFF4953 0.34 +0.0
51,051 - GFF4953 0.34 +0.2
51,275 + GFF4953 0.39 -0.1
51,275 + GFF4953 0.39 +0.1
51,275 + GFF4953 0.39 +1.3
51,276 - GFF4953 0.39 +0.1
51,276 - GFF4953 0.39 -0.2
51,276 - GFF4953 0.39 +0.4
51,276 - GFF4953 0.39 -0.6
51,510 - GFF4953 0.43 +0.4
51,510 - GFF4953 0.43 -0.4
51,510 - GFF4953 0.43 -1.2
51,642 - GFF4953 0.46 +0.4
51,840 - GFF4953 0.50 -0.5
51,845 + GFF4953 0.51 -0.2
51,845 + GFF4953 0.51 -1.3
51,846 - GFF4953 0.51 +0.5
51,846 - GFF4953 0.51 -0.4
51,846 - GFF4953 0.51 -0.5
51,846 - GFF4953 0.51 +2.0
51,846 - GFF4953 0.51 -0.2
51,846 - GFF4953 0.51 +0.3
51,846 - GFF4953 0.51 -0.4
51,846 - GFF4953 0.51 -0.2
51,846 - GFF4953 0.51 -1.1
51,851 + GFF4953 0.51 -0.4
51,852 - GFF4953 0.51 +3.0
51,852 - GFF4953 0.51 -0.4
51,852 - GFF4953 0.51 +0.3
51,852 - GFF4953 0.51 +0.7
51,869 + GFF4953 0.51 +0.4
51,914 + GFF4953 0.52 -0.3
51,914 + GFF4953 0.52 -0.5
51,914 + GFF4953 0.52 -0.2
51,917 + GFF4953 0.52 +0.6
51,917 + GFF4953 0.52 -0.2
51,917 + GFF4953 0.52 -0.3
51,918 - GFF4953 0.52 -0.4
51,918 - GFF4953 0.52 +0.3
51,918 - GFF4953 0.52 +0.4
51,918 - GFF4953 0.52 +0.9
51,918 - GFF4953 0.52 -1.0
51,923 + GFF4953 0.52 -0.3
51,923 + GFF4953 0.52 +0.9
51,923 + GFF4953 0.52 -0.0
51,924 - GFF4953 0.52 +0.5
52,209 - GFF4953 0.58 -0.1
52,385 + GFF4953 0.62 -0.6
52,385 + GFF4953 0.62 -0.2
52,386 - GFF4953 0.62 -0.1
52,530 - GFF4953 0.65 +0.6
52,530 - GFF4953 0.65 -1.0
52,764 - GFF4953 0.70 +1.4
52,764 - GFF4953 0.70 -0.4
52,764 - GFF4953 0.70 +0.4
52,814 + GFF4953 0.71 +0.3
52,816 - GFF4953 0.71 +0.1
52,868 + GFF4953 0.72 +0.2
52,868 + GFF4953 0.72 +0.2
52,869 - GFF4953 0.72 +0.6
53,048 + GFF4953 0.76 +2.5
53,049 - GFF4953 0.76 +0.6
53,084 + GFF4953 0.77 -0.4
53,084 + GFF4953 0.77 -1.4
53,084 + GFF4953 0.77 -0.7
53,084 + GFF4953 0.77 -0.2
53,084 + GFF4953 0.77 +0.0
53,084 + GFF4953 0.77 +0.0
53,084 + GFF4953 0.77 -1.0
53,085 - GFF4953 0.77 -0.6
53,085 - GFF4953 0.77 -0.0
53,085 - GFF4953 0.77 -0.4
53,919 - -0.8
53,922 + -0.2
53,923 - -0.5
53,923 - +0.7
53,923 - +0.4
54,617 - GFF4954 0.58 -0.2
54,617 - GFF4954 0.58 -0.4
54,797 - GFF4954 0.83 +1.0
54,896 - -0.1

Or see this region's nucleotide sequence