Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4948 and GFF4949 overlap by 4 nucleotides GFF4949 and GFF4950 overlap by 4 nucleotides
GFF4948 - ABC transporter, substrate-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 43,846 to 44,892
GFF4948
GFF4949 - ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose) / ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 44,889 to 46,412
GFF4949
GFF4950 - ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose), at 46,409 to 47,437
GFF4950
Position (kb) 44
45
46
47 Strain fitness (log2 ratio) -2
-1
0
1
2 at 43.975 kb on + strand, within GFF4948 at 43.976 kb on - strand, within GFF4948 at 43.976 kb on - strand, within GFF4948 at 44.008 kb on + strand, within GFF4948 at 44.009 kb on - strand, within GFF4948 at 44.009 kb on - strand, within GFF4948 at 44.023 kb on + strand, within GFF4948 at 44.024 kb on - strand, within GFF4948 at 44.090 kb on - strand, within GFF4948 at 44.479 kb on + strand, within GFF4948 at 44.480 kb on - strand, within GFF4948 at 44.692 kb on + strand, within GFF4948 at 44.692 kb on + strand, within GFF4948 at 44.692 kb on + strand, within GFF4948 at 44.692 kb on + strand, within GFF4948 at 44.692 kb on + strand, within GFF4948 at 44.693 kb on - strand, within GFF4948 at 44.693 kb on - strand, within GFF4948 at 44.693 kb on - strand, within GFF4948 at 44.693 kb on - strand, within GFF4948 at 44.693 kb on - strand, within GFF4948 at 44.693 kb on - strand, within GFF4948 at 44.842 kb on + strand at 44.854 kb on + strand at 44.855 kb on - strand at 44.855 kb on - strand at 44.855 kb on - strand at 44.855 kb on - strand at 45.241 kb on - strand, within GFF4949 at 45.483 kb on + strand, within GFF4949 at 45.483 kb on + strand, within GFF4949 at 45.484 kb on - strand, within GFF4949 at 45.484 kb on - strand, within GFF4949 at 45.484 kb on - strand, within GFF4949 at 45.509 kb on - strand, within GFF4949 at 45.630 kb on + strand, within GFF4949 at 45.630 kb on + strand, within GFF4949 at 45.630 kb on + strand, within GFF4949 at 45.630 kb on + strand, within GFF4949 at 45.630 kb on + strand, within GFF4949 at 45.631 kb on - strand, within GFF4949 at 45.631 kb on - strand, within GFF4949 at 45.631 kb on - strand, within GFF4949 at 45.631 kb on - strand, within GFF4949 at 45.631 kb on - strand, within GFF4949 at 45.631 kb on - strand, within GFF4949 at 45.634 kb on - strand, within GFF4949 at 45.634 kb on - strand, within GFF4949 at 45.867 kb on + strand, within GFF4949 at 45.867 kb on + strand, within GFF4949 at 45.868 kb on - strand, within GFF4949 at 45.897 kb on + strand, within GFF4949 at 45.898 kb on - strand, within GFF4949 at 45.898 kb on - strand, within GFF4949 at 45.930 kb on + strand, within GFF4949 at 46.309 kb on + strand at 46.574 kb on + strand, within GFF4950 at 47.054 kb on + strand, within GFF4950 at 47.084 kb on + strand, within GFF4950 at 47.084 kb on + strand, within GFF4950 at 47.166 kb on - strand, within GFF4950 at 47.166 kb on - strand, within GFF4950 at 47.166 kb on - strand, within GFF4950
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 43,975 + GFF4948 0.12 +0.7 43,976 - GFF4948 0.12 +0.8 43,976 - GFF4948 0.12 +0.6 44,008 + GFF4948 0.15 -0.8 44,009 - GFF4948 0.16 -0.9 44,009 - GFF4948 0.16 -0.2 44,023 + GFF4948 0.17 -0.2 44,024 - GFF4948 0.17 -0.0 44,090 - GFF4948 0.23 -0.2 44,479 + GFF4948 0.60 +0.0 44,480 - GFF4948 0.61 +0.1 44,692 + GFF4948 0.81 +0.4 44,692 + GFF4948 0.81 +0.1 44,692 + GFF4948 0.81 +1.0 44,692 + GFF4948 0.81 +0.2 44,692 + GFF4948 0.81 -0.9 44,693 - GFF4948 0.81 -0.4 44,693 - GFF4948 0.81 -0.8 44,693 - GFF4948 0.81 -0.8 44,693 - GFF4948 0.81 -0.5 44,693 - GFF4948 0.81 -0.4 44,693 - GFF4948 0.81 -0.7 44,842 + -0.5 44,854 + +0.1 44,855 - -1.1 44,855 - +0.7 44,855 - -0.6 44,855 - +0.2 45,241 - GFF4949 0.23 -1.0 45,483 + GFF4949 0.39 +0.2 45,483 + GFF4949 0.39 +0.6 45,484 - GFF4949 0.39 -0.8 45,484 - GFF4949 0.39 +0.7 45,484 - GFF4949 0.39 -1.4 45,509 - GFF4949 0.41 +0.3 45,630 + GFF4949 0.49 -1.6 45,630 + GFF4949 0.49 -0.0 45,630 + GFF4949 0.49 +0.9 45,630 + GFF4949 0.49 -0.1 45,630 + GFF4949 0.49 -0.4 45,631 - GFF4949 0.49 -0.4 45,631 - GFF4949 0.49 +0.3 45,631 - GFF4949 0.49 +0.2 45,631 - GFF4949 0.49 -1.2 45,631 - GFF4949 0.49 +1.0 45,631 - GFF4949 0.49 +0.1 45,634 - GFF4949 0.49 -0.6 45,634 - GFF4949 0.49 +0.8 45,867 + GFF4949 0.64 -0.4 45,867 + GFF4949 0.64 -0.5 45,868 - GFF4949 0.64 -0.5 45,897 + GFF4949 0.66 +0.0 45,898 - GFF4949 0.66 +0.7 45,898 - GFF4949 0.66 -0.7 45,930 + GFF4949 0.68 +0.1 46,309 + -0.4 46,574 + GFF4950 0.16 -0.5 47,054 + GFF4950 0.63 +2.0 47,084 + GFF4950 0.66 -0.9 47,084 + GFF4950 0.66 -0.8 47,166 - GFF4950 0.74 +1.4 47,166 - GFF4950 0.74 -0.5 47,166 - GFF4950 0.74 -2.0
Or see this region's nucleotide sequence