Strain Fitness in Variovorax sp. SCN45 around GFF4939

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4937 and GFF4938 overlap by 4 nucleotidesGFF4938 and GFF4939 are separated by 91 nucleotidesGFF4939 and GFF4940 are separated by 169 nucleotidesGFF4940 and GFF4941 are separated by 22 nucleotides GFF4937 - no description, at 31,114 to 31,590 GFF4937 GFF4938 - no description, at 31,587 to 32,321 GFF4938 GFF4939 - hypothetical protein, at 32,413 to 33,036 GFF4939 GFF4940 - FIG033889: YebC paralog in Betaproteobacteria, at 33,206 to 33,919 GFF4940 GFF4941 - Gfa-like protein, at 33,942 to 34,361 GFF4941 Position (kb) 32 33 34Strain fitness (log2 ratio) -1 0 1 2at 31.430 kb on + strand, within GFF4937at 31.430 kb on + strand, within GFF4937at 31.431 kb on - strand, within GFF4937at 31.431 kb on - strand, within GFF4937at 31.431 kb on - strand, within GFF4937at 31.847 kb on - strand, within GFF4938at 31.870 kb on + strand, within GFF4938at 31.870 kb on + strand, within GFF4938at 31.870 kb on + strand, within GFF4938at 31.870 kb on + strand, within GFF4938at 31.870 kb on + strand, within GFF4938at 31.870 kb on + strand, within GFF4938at 31.870 kb on + strand, within GFF4938at 31.871 kb on - strand, within GFF4938at 31.871 kb on - strand, within GFF4938at 31.871 kb on - strand, within GFF4938at 31.871 kb on - strand, within GFF4938at 31.871 kb on - strand, within GFF4938at 31.871 kb on - strand, within GFF4938at 31.871 kb on - strand, within GFF4938at 31.871 kb on - strand, within GFF4938at 32.068 kb on + strand, within GFF4938at 32.068 kb on + strand, within GFF4938at 32.068 kb on + strand, within GFF4938at 32.068 kb on + strand, within GFF4938at 32.068 kb on + strand, within GFF4938at 32.069 kb on - strand, within GFF4938at 32.069 kb on - strand, within GFF4938at 32.069 kb on - strand, within GFF4938at 32.069 kb on - strand, within GFF4938at 32.069 kb on - strand, within GFF4938at 32.069 kb on - strand, within GFF4938at 32.069 kb on - strand, within GFF4938at 32.155 kb on + strand, within GFF4938at 32.155 kb on + strand, within GFF4938at 32.155 kb on + strand, within GFF4938at 32.155 kb on + strand, within GFF4938at 32.155 kb on + strand, within GFF4938at 32.156 kb on - strand, within GFF4938at 32.156 kb on - strand, within GFF4938at 32.156 kb on - strand, within GFF4938at 32.156 kb on - strand, within GFF4938at 32.156 kb on - strand, within GFF4938at 32.156 kb on - strand, within GFF4938at 32.337 kb on + strandat 32.338 kb on - strandat 32.368 kb on + strandat 32.368 kb on + strandat 32.368 kb on + strandat 32.368 kb on + strandat 32.368 kb on + strandat 32.368 kb on + strandat 32.368 kb on + strandat 32.368 kb on + strandat 32.368 kb on + strandat 32.368 kb on + strandat 32.368 kb on + strandat 32.368 kb on + strandat 32.369 kb on - strandat 32.369 kb on - strandat 32.369 kb on - strandat 32.369 kb on - strandat 32.542 kb on + strand, within GFF4939at 32.542 kb on + strand, within GFF4939at 32.543 kb on - strand, within GFF4939at 32.543 kb on - strand, within GFF4939at 32.543 kb on - strand, within GFF4939at 32.543 kb on - strand, within GFF4939at 32.543 kb on - strand, within GFF4939at 32.726 kb on + strand, within GFF4939at 32.726 kb on + strand, within GFF4939at 32.726 kb on + strand, within GFF4939at 32.726 kb on + strand, within GFF4939at 32.727 kb on - strand, within GFF4939at 32.727 kb on - strand, within GFF4939at 32.727 kb on - strand, within GFF4939at 32.727 kb on - strand, within GFF4939at 32.771 kb on + strand, within GFF4939at 32.771 kb on + strand, within GFF4939at 32.771 kb on + strand, within GFF4939at 32.772 kb on - strand, within GFF4939at 32.772 kb on - strand, within GFF4939at 32.772 kb on - strand, within GFF4939at 32.789 kb on + strand, within GFF4939at 32.789 kb on + strand, within GFF4939at 32.789 kb on + strand, within GFF4939at 32.789 kb on + strand, within GFF4939at 32.789 kb on + strand, within GFF4939at 32.790 kb on - strand, within GFF4939at 32.790 kb on - strand, within GFF4939at 32.790 kb on - strand, within GFF4939at 32.790 kb on - strand, within GFF4939at 32.790 kb on - strand, within GFF4939at 32.790 kb on - strand, within GFF4939at 32.905 kb on + strand, within GFF4939at 32.905 kb on + strand, within GFF4939at 32.906 kb on - strand, within GFF4939at 32.906 kb on - strand, within GFF4939at 32.906 kb on - strand, within GFF4939at 32.906 kb on - strand, within GFF4939at 32.906 kb on - strand, within GFF4939at 32.906 kb on - strand, within GFF4939at 33.046 kb on - strandat 33.046 kb on - strandat 33.122 kb on - strandat 33.122 kb on - strandat 33.126 kb on + strandat 33.126 kb on + strandat 33.126 kb on + strandat 33.126 kb on + strandat 33.126 kb on + strandat 33.126 kb on + strandat 33.126 kb on + strandat 33.127 kb on - strandat 33.127 kb on - strandat 33.127 kb on - strandat 33.452 kb on + strand, within GFF4940at 33.452 kb on + strand, within GFF4940at 33.452 kb on + strand, within GFF4940at 33.452 kb on + strand, within GFF4940at 33.452 kb on + strand, within GFF4940at 33.453 kb on - strand, within GFF4940at 33.453 kb on - strand, within GFF4940at 33.453 kb on - strand, within GFF4940at 33.453 kb on - strand, within GFF4940at 33.453 kb on - strand, within GFF4940at 33.791 kb on + strand, within GFF4940at 33.791 kb on + strand, within GFF4940at 33.791 kb on + strand, within GFF4940at 33.792 kb on - strand, within GFF4940at 33.792 kb on - strand, within GFF4940at 33.978 kb on + strandat 33.978 kb on + strandat 33.978 kb on + strandat 33.979 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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31,430 + GFF4937 0.66 -0.1
31,430 + GFF4937 0.66 -0.5
31,431 - GFF4937 0.66 +2.0
31,431 - GFF4937 0.66 +0.2
31,431 - GFF4937 0.66 -0.1
31,847 - GFF4938 0.35 -0.0
31,870 + GFF4938 0.39 -0.8
31,870 + GFF4938 0.39 -0.0
31,870 + GFF4938 0.39 -0.4
31,870 + GFF4938 0.39 +0.8
31,870 + GFF4938 0.39 +1.5
31,870 + GFF4938 0.39 -0.4
31,870 + GFF4938 0.39 -0.6
31,871 - GFF4938 0.39 -1.1
31,871 - GFF4938 0.39 -0.5
31,871 - GFF4938 0.39 -0.6
31,871 - GFF4938 0.39 +1.0
31,871 - GFF4938 0.39 -0.4
31,871 - GFF4938 0.39 +0.1
31,871 - GFF4938 0.39 +0.9
31,871 - GFF4938 0.39 -0.0
32,068 + GFF4938 0.65 +0.1
32,068 + GFF4938 0.65 -0.6
32,068 + GFF4938 0.65 +0.6
32,068 + GFF4938 0.65 -0.7
32,068 + GFF4938 0.65 -0.1
32,069 - GFF4938 0.66 +0.1
32,069 - GFF4938 0.66 -0.1
32,069 - GFF4938 0.66 +1.0
32,069 - GFF4938 0.66 -0.2
32,069 - GFF4938 0.66 -0.2
32,069 - GFF4938 0.66 +1.0
32,069 - GFF4938 0.66 -0.8
32,155 + GFF4938 0.77 -0.2
32,155 + GFF4938 0.77 -0.7
32,155 + GFF4938 0.77 -0.2
32,155 + GFF4938 0.77 -0.6
32,155 + GFF4938 0.77 +0.2
32,156 - GFF4938 0.77 -0.5
32,156 - GFF4938 0.77 +0.4
32,156 - GFF4938 0.77 -0.2
32,156 - GFF4938 0.77 +1.2
32,156 - GFF4938 0.77 +0.2
32,156 - GFF4938 0.77 -0.6
32,337 + +0.1
32,338 - -0.7
32,368 + +0.5
32,368 + +0.7
32,368 + -0.4
32,368 + -0.3
32,368 + +0.1
32,368 + +0.2
32,368 + +0.6
32,368 + +0.1
32,368 + -0.9
32,368 + -0.8
32,368 + +0.1
32,368 + -0.1
32,369 - +0.4
32,369 - -0.1
32,369 - -0.5
32,369 - -0.1
32,542 + GFF4939 0.21 -0.9
32,542 + GFF4939 0.21 -1.7
32,543 - GFF4939 0.21 +0.3
32,543 - GFF4939 0.21 -0.4
32,543 - GFF4939 0.21 -0.1
32,543 - GFF4939 0.21 +0.5
32,543 - GFF4939 0.21 -0.6
32,726 + GFF4939 0.50 -0.3
32,726 + GFF4939 0.50 +0.8
32,726 + GFF4939 0.50 -0.6
32,726 + GFF4939 0.50 -0.3
32,727 - GFF4939 0.50 +1.0
32,727 - GFF4939 0.50 +1.0
32,727 - GFF4939 0.50 +0.3
32,727 - GFF4939 0.50 +0.4
32,771 + GFF4939 0.57 +1.3
32,771 + GFF4939 0.57 +0.1
32,771 + GFF4939 0.57 -0.4
32,772 - GFF4939 0.58 -1.7
32,772 - GFF4939 0.58 -0.2
32,772 - GFF4939 0.58 +0.5
32,789 + GFF4939 0.60 +0.1
32,789 + GFF4939 0.60 -0.4
32,789 + GFF4939 0.60 +2.0
32,789 + GFF4939 0.60 -0.5
32,789 + GFF4939 0.60 -0.2
32,790 - GFF4939 0.60 +0.0
32,790 - GFF4939 0.60 +1.0
32,790 - GFF4939 0.60 +0.4
32,790 - GFF4939 0.60 +0.2
32,790 - GFF4939 0.60 -0.3
32,790 - GFF4939 0.60 +0.5
32,905 + GFF4939 0.79 +0.5
32,905 + GFF4939 0.79 +2.3
32,906 - GFF4939 0.79 +0.2
32,906 - GFF4939 0.79 +1.0
32,906 - GFF4939 0.79 +1.6
32,906 - GFF4939 0.79 +0.6
32,906 - GFF4939 0.79 -0.2
32,906 - GFF4939 0.79 -0.0
33,046 - -0.1
33,046 - -0.2
33,122 - -0.0
33,122 - +0.8
33,126 + +0.8
33,126 + +0.3
33,126 + -0.5
33,126 + -0.1
33,126 + -0.2
33,126 + -0.1
33,126 + -1.7
33,127 - -0.8
33,127 - -0.2
33,127 - -0.4
33,452 + GFF4940 0.34 -0.5
33,452 + GFF4940 0.34 -0.0
33,452 + GFF4940 0.34 -0.9
33,452 + GFF4940 0.34 +0.5
33,452 + GFF4940 0.34 -0.1
33,453 - GFF4940 0.35 +0.5
33,453 - GFF4940 0.35 -0.1
33,453 - GFF4940 0.35 -0.4
33,453 - GFF4940 0.35 -0.6
33,453 - GFF4940 0.35 +1.3
33,791 + GFF4940 0.82 -0.1
33,791 + GFF4940 0.82 -0.6
33,791 + GFF4940 0.82 -0.4
33,792 - GFF4940 0.82 -1.7
33,792 - GFF4940 0.82 -0.5
33,978 + -0.4
33,978 + +0.4
33,978 + -0.5
33,979 - +0.1

Or see this region's nucleotide sequence