Strain Fitness in Variovorax sp. SCN45 around GFF4905

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4902 and GFF4903 overlap by 4 nucleotidesGFF4903 and GFF4904 are separated by 44 nucleotidesGFF4904 and GFF4905 are separated by 16 nucleotidesGFF4905 and GFF4906 are separated by 105 nucleotides GFF4902 - hypothetical protein, at 267,458 to 268,879 GFF4902 GFF4903 - no description, at 268,876 to 269,082 GFF4903 GFF4904 - hypothetical protein, at 269,127 to 269,723 GFF4904 GFF4905 - hypothetical protein, at 269,740 to 271,149 GFF4905 GFF4906 - hypothetical protein, at 271,255 to 273,033 GFF4906 Position (kb) 269 270 271 272Strain fitness (log2 ratio) -2 -1 0 1at 268.802 kb on + strandat 268.802 kb on + strandat 269.024 kb on - strand, within GFF4903at 269.126 kb on + strandat 269.126 kb on + strandat 269.127 kb on - strandat 269.140 kb on + strandat 269.371 kb on - strand, within GFF4904at 269.385 kb on + strand, within GFF4904at 269.385 kb on + strand, within GFF4904at 269.385 kb on + strand, within GFF4904at 269.385 kb on + strand, within GFF4904at 269.385 kb on + strand, within GFF4904at 269.385 kb on + strand, within GFF4904at 269.386 kb on - strand, within GFF4904at 269.386 kb on - strand, within GFF4904at 269.386 kb on - strand, within GFF4904at 269.386 kb on - strand, within GFF4904at 269.386 kb on - strand, within GFF4904at 269.386 kb on - strand, within GFF4904at 269.400 kb on + strand, within GFF4904at 269.400 kb on + strand, within GFF4904at 269.400 kb on + strand, within GFF4904at 269.400 kb on + strand, within GFF4904at 269.400 kb on + strand, within GFF4904at 269.401 kb on - strand, within GFF4904at 269.401 kb on - strand, within GFF4904at 269.401 kb on - strand, within GFF4904at 269.401 kb on - strand, within GFF4904at 269.401 kb on - strand, within GFF4904at 269.401 kb on - strand, within GFF4904at 269.401 kb on - strand, within GFF4904at 269.415 kb on + strand, within GFF4904at 269.415 kb on + strand, within GFF4904at 269.415 kb on + strand, within GFF4904at 269.415 kb on + strand, within GFF4904at 269.415 kb on + strand, within GFF4904at 269.416 kb on - strand, within GFF4904at 269.416 kb on - strand, within GFF4904at 269.416 kb on - strand, within GFF4904at 269.416 kb on - strand, within GFF4904at 269.416 kb on - strand, within GFF4904at 269.660 kb on + strand, within GFF4904at 269.661 kb on - strand, within GFF4904at 270.011 kb on - strand, within GFF4905at 270.011 kb on - strand, within GFF4905at 270.011 kb on - strand, within GFF4905at 270.022 kb on + strand, within GFF4905at 270.023 kb on - strand, within GFF4905at 270.023 kb on - strand, within GFF4905at 270.023 kb on - strand, within GFF4905at 270.023 kb on - strand, within GFF4905at 270.023 kb on - strand, within GFF4905at 270.024 kb on - strand, within GFF4905at 270.073 kb on + strand, within GFF4905at 270.073 kb on + strand, within GFF4905at 270.073 kb on + strand, within GFF4905at 270.155 kb on - strand, within GFF4905at 270.238 kb on + strand, within GFF4905at 270.239 kb on - strand, within GFF4905at 270.269 kb on - strand, within GFF4905at 270.269 kb on - strand, within GFF4905at 270.301 kb on + strand, within GFF4905at 270.301 kb on + strand, within GFF4905at 270.301 kb on + strand, within GFF4905at 270.301 kb on + strand, within GFF4905at 270.301 kb on + strand, within GFF4905at 270.301 kb on + strand, within GFF4905at 270.502 kb on + strand, within GFF4905at 270.502 kb on + strand, within GFF4905at 270.502 kb on + strand, within GFF4905at 270.503 kb on - strand, within GFF4905at 270.503 kb on - strand, within GFF4905at 270.503 kb on - strand, within GFF4905at 270.503 kb on - strand, within GFF4905at 270.637 kb on + strand, within GFF4905at 270.637 kb on + strand, within GFF4905at 270.637 kb on + strand, within GFF4905at 270.637 kb on + strand, within GFF4905at 270.638 kb on - strand, within GFF4905at 270.638 kb on - strand, within GFF4905at 270.638 kb on - strand, within GFF4905at 270.638 kb on - strand, within GFF4905at 270.638 kb on - strand, within GFF4905at 270.638 kb on - strand, within GFF4905at 271.147 kb on + strandat 271.147 kb on + strandat 271.147 kb on + strandat 271.148 kb on - strandat 271.174 kb on + strandat 271.175 kb on - strandat 271.175 kb on - strandat 271.175 kb on - strandat 271.175 kb on - strandat 271.175 kb on - strandat 271.794 kb on + strand, within GFF4906at 271.795 kb on - strand, within GFF4906at 271.802 kb on - strand, within GFF4906at 271.802 kb on - strand, within GFF4906at 271.802 kb on - strand, within GFF4906at 271.802 kb on - strand, within GFF4906at 271.837 kb on + strand, within GFF4906at 271.838 kb on - strand, within GFF4906at 271.838 kb on - strand, within GFF4906at 271.838 kb on - strand, within GFF4906at 271.838 kb on - strand, within GFF4906at 272.103 kb on + strand, within GFF4906at 272.103 kb on + strand, within GFF4906at 272.103 kb on + strand, within GFF4906at 272.124 kb on + strand, within GFF4906at 272.124 kb on + strand, within GFF4906at 272.125 kb on - strand, within GFF4906

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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268,802 + -0.3
268,802 + +1.3
269,024 - GFF4903 0.71 -0.3
269,126 + +0.1
269,126 + -0.1
269,127 - +0.8
269,140 + -0.2
269,371 - GFF4904 0.41 -0.0
269,385 + GFF4904 0.43 -0.5
269,385 + GFF4904 0.43 +0.0
269,385 + GFF4904 0.43 +0.4
269,385 + GFF4904 0.43 -0.0
269,385 + GFF4904 0.43 -0.7
269,385 + GFF4904 0.43 -0.2
269,386 - GFF4904 0.43 +0.5
269,386 - GFF4904 0.43 -0.4
269,386 - GFF4904 0.43 -0.6
269,386 - GFF4904 0.43 -0.8
269,386 - GFF4904 0.43 +0.1
269,386 - GFF4904 0.43 +1.1
269,400 + GFF4904 0.46 +0.1
269,400 + GFF4904 0.46 +0.0
269,400 + GFF4904 0.46 -0.1
269,400 + GFF4904 0.46 -0.7
269,400 + GFF4904 0.46 -0.5
269,401 - GFF4904 0.46 +0.1
269,401 - GFF4904 0.46 +0.3
269,401 - GFF4904 0.46 +0.2
269,401 - GFF4904 0.46 -0.3
269,401 - GFF4904 0.46 -0.2
269,401 - GFF4904 0.46 +0.4
269,401 - GFF4904 0.46 +0.2
269,415 + GFF4904 0.48 -0.6
269,415 + GFF4904 0.48 +0.5
269,415 + GFF4904 0.48 -0.0
269,415 + GFF4904 0.48 -0.7
269,415 + GFF4904 0.48 +0.4
269,416 - GFF4904 0.48 -1.2
269,416 - GFF4904 0.48 +0.1
269,416 - GFF4904 0.48 -0.9
269,416 - GFF4904 0.48 -1.6
269,416 - GFF4904 0.48 -0.9
269,660 + GFF4904 0.89 -0.2
269,661 - GFF4904 0.89 +0.8
270,011 - GFF4905 0.19 -0.3
270,011 - GFF4905 0.19 -1.2
270,011 - GFF4905 0.19 -0.4
270,022 + GFF4905 0.20 +0.3
270,023 - GFF4905 0.20 +0.5
270,023 - GFF4905 0.20 -0.1
270,023 - GFF4905 0.20 -0.5
270,023 - GFF4905 0.20 -0.5
270,023 - GFF4905 0.20 -0.5
270,024 - GFF4905 0.20 +0.1
270,073 + GFF4905 0.24 +0.9
270,073 + GFF4905 0.24 -0.7
270,073 + GFF4905 0.24 -0.4
270,155 - GFF4905 0.29 +0.5
270,238 + GFF4905 0.35 -1.0
270,239 - GFF4905 0.35 -0.9
270,269 - GFF4905 0.38 -1.2
270,269 - GFF4905 0.38 -1.0
270,301 + GFF4905 0.40 +1.7
270,301 + GFF4905 0.40 +0.2
270,301 + GFF4905 0.40 -0.5
270,301 + GFF4905 0.40 -0.7
270,301 + GFF4905 0.40 -0.7
270,301 + GFF4905 0.40 +0.4
270,502 + GFF4905 0.54 -1.5
270,502 + GFF4905 0.54 -0.0
270,502 + GFF4905 0.54 -0.2
270,503 - GFF4905 0.54 -0.5
270,503 - GFF4905 0.54 -0.2
270,503 - GFF4905 0.54 +0.1
270,503 - GFF4905 0.54 -0.5
270,637 + GFF4905 0.64 -0.3
270,637 + GFF4905 0.64 -0.7
270,637 + GFF4905 0.64 -0.5
270,637 + GFF4905 0.64 -0.4
270,638 - GFF4905 0.64 -0.4
270,638 - GFF4905 0.64 -0.5
270,638 - GFF4905 0.64 -0.3
270,638 - GFF4905 0.64 -0.2
270,638 - GFF4905 0.64 +0.4
270,638 - GFF4905 0.64 +0.1
271,147 + -0.0
271,147 + -0.5
271,147 + -0.4
271,148 - +1.4
271,174 + +0.8
271,175 - +0.7
271,175 - +0.2
271,175 - -0.4
271,175 - +0.0
271,175 - -0.4
271,794 + GFF4906 0.30 +0.1
271,795 - GFF4906 0.30 +0.9
271,802 - GFF4906 0.31 +0.3
271,802 - GFF4906 0.31 -2.3
271,802 - GFF4906 0.31 +1.1
271,802 - GFF4906 0.31 -0.0
271,837 + GFF4906 0.33 +0.7
271,838 - GFF4906 0.33 -0.7
271,838 - GFF4906 0.33 +0.4
271,838 - GFF4906 0.33 -0.5
271,838 - GFF4906 0.33 +0.0
272,103 + GFF4906 0.48 +0.4
272,103 + GFF4906 0.48 -0.6
272,103 + GFF4906 0.48 -0.9
272,124 + GFF4906 0.49 +0.1
272,124 + GFF4906 0.49 -0.2
272,125 - GFF4906 0.49 -1.3

Or see this region's nucleotide sequence