Strain Fitness in Variovorax sp. SCN45 around GFF4875

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4873 and GFF4874 are separated by 50 nucleotidesGFF4874 and GFF4875 are separated by 26 nucleotidesGFF4875 and GFF4876 are separated by 83 nucleotidesGFF4876 and GFF4877 are separated by 129 nucleotides GFF4873 - no description, at 243,972 to 244,178 GFF4873 GFF4874 - Plasmid replication initiator protein, at 244,229 to 245,077 GFF4874 GFF4875 - hypothetical protein, at 245,104 to 245,385 GFF4875 GFF4876 - FIG00973848: hypothetical protein, at 245,469 to 246,218 GFF4876 GFF4877 - no description, at 246,348 to 246,491 GFF4877 Position (kb) 245 246Strain fitness (log2 ratio) -2 -1 0 1 2at 244.150 kb on + strand, within GFF4873at 244.158 kb on + strandat 244.158 kb on + strandat 244.159 kb on - strandat 244.159 kb on - strandat 244.159 kb on - strandat 244.173 kb on + strandat 244.174 kb on - strandat 244.174 kb on - strandat 244.174 kb on - strandat 244.174 kb on - strandat 244.197 kb on + strandat 244.197 kb on + strandat 244.198 kb on - strandat 244.198 kb on - strandat 244.198 kb on - strandat 244.231 kb on - strandat 244.314 kb on + strand, within GFF4874at 244.314 kb on + strand, within GFF4874at 244.315 kb on - strand, within GFF4874at 244.315 kb on - strand, within GFF4874at 244.315 kb on - strand, within GFF4874at 244.315 kb on - strand, within GFF4874at 244.369 kb on - strand, within GFF4874at 244.369 kb on - strand, within GFF4874at 244.369 kb on - strand, within GFF4874at 244.464 kb on + strand, within GFF4874at 244.465 kb on - strand, within GFF4874at 244.465 kb on - strand, within GFF4874at 244.465 kb on - strand, within GFF4874at 244.465 kb on - strand, within GFF4874at 244.500 kb on + strand, within GFF4874at 244.500 kb on + strand, within GFF4874at 244.501 kb on - strand, within GFF4874at 244.501 kb on - strand, within GFF4874at 244.501 kb on - strand, within GFF4874at 244.501 kb on - strand, within GFF4874at 244.548 kb on + strand, within GFF4874at 244.548 kb on + strand, within GFF4874at 244.548 kb on + strand, within GFF4874at 244.548 kb on + strand, within GFF4874at 244.548 kb on + strand, within GFF4874at 244.738 kb on + strand, within GFF4874at 244.739 kb on - strand, within GFF4874at 244.739 kb on - strand, within GFF4874at 244.767 kb on + strand, within GFF4874at 244.767 kb on + strand, within GFF4874at 244.767 kb on + strand, within GFF4874at 245.141 kb on + strand, within GFF4875at 245.142 kb on - strand, within GFF4875at 245.207 kb on + strand, within GFF4875at 245.207 kb on + strand, within GFF4875at 245.207 kb on + strand, within GFF4875at 245.207 kb on + strand, within GFF4875at 245.207 kb on + strand, within GFF4875at 245.207 kb on + strand, within GFF4875at 245.207 kb on + strand, within GFF4875at 245.207 kb on + strand, within GFF4875at 245.207 kb on + strand, within GFF4875at 245.207 kb on + strand, within GFF4875at 245.208 kb on - strand, within GFF4875at 245.208 kb on - strand, within GFF4875at 245.208 kb on - strand, within GFF4875at 245.208 kb on - strand, within GFF4875at 245.208 kb on - strand, within GFF4875at 245.208 kb on - strand, within GFF4875at 245.208 kb on - strand, within GFF4875at 245.208 kb on - strand, within GFF4875at 245.208 kb on - strand, within GFF4875at 245.208 kb on - strand, within GFF4875at 245.208 kb on - strand, within GFF4875at 245.208 kb on - strand, within GFF4875at 245.294 kb on + strand, within GFF4875at 245.295 kb on - strand, within GFF4875at 245.321 kb on + strand, within GFF4875at 245.321 kb on + strand, within GFF4875at 245.322 kb on - strand, within GFF4875at 245.355 kb on + strand, within GFF4875at 245.355 kb on + strand, within GFF4875at 245.356 kb on - strand, within GFF4875at 245.356 kb on - strand, within GFF4875at 245.356 kb on - strand, within GFF4875at 245.526 kb on + strandat 245.526 kb on + strandat 245.527 kb on - strandat 245.608 kb on + strand, within GFF4876at 245.608 kb on + strand, within GFF4876at 245.609 kb on - strand, within GFF4876at 245.609 kb on - strand, within GFF4876at 245.609 kb on - strand, within GFF4876at 245.609 kb on - strand, within GFF4876at 245.609 kb on - strand, within GFF4876at 245.649 kb on + strand, within GFF4876at 245.649 kb on + strand, within GFF4876at 245.649 kb on + strand, within GFF4876at 245.649 kb on + strand, within GFF4876at 245.649 kb on + strand, within GFF4876at 245.649 kb on + strand, within GFF4876at 245.649 kb on + strand, within GFF4876at 245.649 kb on + strand, within GFF4876at 245.650 kb on - strand, within GFF4876at 245.650 kb on - strand, within GFF4876at 245.650 kb on - strand, within GFF4876at 245.650 kb on - strand, within GFF4876at 245.650 kb on - strand, within GFF4876at 245.650 kb on - strand, within GFF4876at 245.658 kb on + strand, within GFF4876at 245.659 kb on - strand, within GFF4876at 245.794 kb on + strand, within GFF4876at 245.794 kb on + strand, within GFF4876at 245.794 kb on + strand, within GFF4876at 245.794 kb on + strand, within GFF4876at 245.795 kb on - strand, within GFF4876at 245.795 kb on - strand, within GFF4876at 245.795 kb on - strand, within GFF4876at 245.836 kb on + strand, within GFF4876at 245.836 kb on + strand, within GFF4876at 245.836 kb on + strand, within GFF4876at 245.837 kb on - strand, within GFF4876at 246.127 kb on + strand, within GFF4876at 246.127 kb on + strand, within GFF4876at 246.127 kb on + strand, within GFF4876at 246.127 kb on + strand, within GFF4876at 246.128 kb on - strand, within GFF4876at 246.128 kb on - strand, within GFF4876at 246.149 kb on + strandat 246.149 kb on + strandat 246.166 kb on + strandat 246.166 kb on + strandat 246.166 kb on + strandat 246.166 kb on + strandat 246.166 kb on + strandat 246.166 kb on + strandat 246.166 kb on + strandat 246.167 kb on - strandat 246.167 kb on - strandat 246.167 kb on - strandat 246.167 kb on - strandat 246.172 kb on + strandat 246.172 kb on + strandat 246.173 kb on - strandat 246.173 kb on - strandat 246.173 kb on - strandat 246.234 kb on - strandat 246.285 kb on + strandat 246.285 kb on + strandat 246.285 kb on + strandat 246.285 kb on + strandat 246.286 kb on - strandat 246.286 kb on - strandat 246.286 kb on - strandat 246.302 kb on + strandat 246.302 kb on + strandat 246.302 kb on + strandat 246.302 kb on + strandat 246.303 kb on - strandat 246.310 kb on + strandat 246.311 kb on - strandat 246.311 kb on - strandat 246.311 kb on - strandat 246.311 kb on - strandat 246.315 kb on + strandat 246.315 kb on + strandat 246.315 kb on + strandat 246.315 kb on + strandat 246.315 kb on + strandat 246.316 kb on - strandat 246.316 kb on - strandat 246.316 kb on - strandat 246.316 kb on - strandat 246.316 kb on - strandat 246.316 kb on - strandat 246.316 kb on - strandat 246.316 kb on - strandat 246.318 kb on + strandat 246.319 kb on - strandat 246.319 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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244,150 + GFF4873 0.86 -0.2
244,158 + -1.1
244,158 + -1.6
244,159 - -1.6
244,159 - +0.2
244,159 - -0.2
244,173 + -0.4
244,174 - +0.4
244,174 - -1.3
244,174 - +1.7
244,174 - -0.7
244,197 + -2.7
244,197 + -1.3
244,198 - +0.7
244,198 - -0.3
244,198 - +1.3
244,231 - +0.5
244,314 + GFF4874 0.10 -0.3
244,314 + GFF4874 0.10 -0.2
244,315 - GFF4874 0.10 -0.3
244,315 - GFF4874 0.10 -0.0
244,315 - GFF4874 0.10 +0.0
244,315 - GFF4874 0.10 -0.5
244,369 - GFF4874 0.16 -0.9
244,369 - GFF4874 0.16 -1.3
244,369 - GFF4874 0.16 -1.3
244,464 + GFF4874 0.28 -1.2
244,465 - GFF4874 0.28 +0.8
244,465 - GFF4874 0.28 -0.7
244,465 - GFF4874 0.28 +0.5
244,465 - GFF4874 0.28 +0.9
244,500 + GFF4874 0.32 -0.9
244,500 + GFF4874 0.32 -1.3
244,501 - GFF4874 0.32 +0.5
244,501 - GFF4874 0.32 -0.3
244,501 - GFF4874 0.32 +0.8
244,501 - GFF4874 0.32 +0.1
244,548 + GFF4874 0.38 -0.0
244,548 + GFF4874 0.38 -1.8
244,548 + GFF4874 0.38 -1.4
244,548 + GFF4874 0.38 -0.1
244,548 + GFF4874 0.38 -0.2
244,738 + GFF4874 0.60 -0.7
244,739 - GFF4874 0.60 +0.7
244,739 - GFF4874 0.60 -0.6
244,767 + GFF4874 0.63 +0.2
244,767 + GFF4874 0.63 -0.3
244,767 + GFF4874 0.63 +0.1
245,141 + GFF4875 0.13 -0.4
245,142 - GFF4875 0.13 -1.1
245,207 + GFF4875 0.37 +0.1
245,207 + GFF4875 0.37 -0.5
245,207 + GFF4875 0.37 -0.7
245,207 + GFF4875 0.37 +2.2
245,207 + GFF4875 0.37 +0.6
245,207 + GFF4875 0.37 +0.2
245,207 + GFF4875 0.37 +1.1
245,207 + GFF4875 0.37 -0.2
245,207 + GFF4875 0.37 -0.1
245,207 + GFF4875 0.37 -0.5
245,208 - GFF4875 0.37 +0.2
245,208 - GFF4875 0.37 -1.5
245,208 - GFF4875 0.37 -0.9
245,208 - GFF4875 0.37 +0.1
245,208 - GFF4875 0.37 +0.5
245,208 - GFF4875 0.37 +0.2
245,208 - GFF4875 0.37 +0.1
245,208 - GFF4875 0.37 -0.2
245,208 - GFF4875 0.37 +0.7
245,208 - GFF4875 0.37 -0.7
245,208 - GFF4875 0.37 +0.1
245,208 - GFF4875 0.37 +1.7
245,294 + GFF4875 0.67 -0.3
245,295 - GFF4875 0.68 -0.5
245,321 + GFF4875 0.77 +0.1
245,321 + GFF4875 0.77 -0.8
245,322 - GFF4875 0.77 -1.1
245,355 + GFF4875 0.89 -0.9
245,355 + GFF4875 0.89 -1.0
245,356 - GFF4875 0.89 -0.9
245,356 - GFF4875 0.89 -1.0
245,356 - GFF4875 0.89 -0.4
245,526 + +0.2
245,526 + +1.2
245,527 - +0.3
245,608 + GFF4876 0.19 +0.5
245,608 + GFF4876 0.19 -0.3
245,609 - GFF4876 0.19 -0.8
245,609 - GFF4876 0.19 -0.0
245,609 - GFF4876 0.19 +1.4
245,609 - GFF4876 0.19 -0.7
245,609 - GFF4876 0.19 -0.9
245,649 + GFF4876 0.24 -0.2
245,649 + GFF4876 0.24 -1.4
245,649 + GFF4876 0.24 +0.1
245,649 + GFF4876 0.24 -0.6
245,649 + GFF4876 0.24 -0.4
245,649 + GFF4876 0.24 -0.1
245,649 + GFF4876 0.24 -0.9
245,649 + GFF4876 0.24 +0.3
245,650 - GFF4876 0.24 -0.6
245,650 - GFF4876 0.24 +1.7
245,650 - GFF4876 0.24 -0.0
245,650 - GFF4876 0.24 -0.3
245,650 - GFF4876 0.24 -0.4
245,650 - GFF4876 0.24 -0.9
245,658 + GFF4876 0.25 +1.7
245,659 - GFF4876 0.25 -0.6
245,794 + GFF4876 0.43 +1.1
245,794 + GFF4876 0.43 -0.3
245,794 + GFF4876 0.43 -0.4
245,794 + GFF4876 0.43 -0.8
245,795 - GFF4876 0.43 +0.7
245,795 - GFF4876 0.43 -1.2
245,795 - GFF4876 0.43 -0.0
245,836 + GFF4876 0.49 -0.1
245,836 + GFF4876 0.49 -1.3
245,836 + GFF4876 0.49 +0.5
245,837 - GFF4876 0.49 +0.4
246,127 + GFF4876 0.88 -0.5
246,127 + GFF4876 0.88 +2.1
246,127 + GFF4876 0.88 -0.3
246,127 + GFF4876 0.88 -0.3
246,128 - GFF4876 0.88 +1.7
246,128 - GFF4876 0.88 +1.2
246,149 + -0.4
246,149 + -1.9
246,166 + -0.5
246,166 + -0.3
246,166 + +0.9
246,166 + +0.5
246,166 + -0.0
246,166 + +0.4
246,166 + +0.5
246,167 - -0.7
246,167 - -0.3
246,167 - -0.2
246,167 - -1.3
246,172 + -0.3
246,172 + -1.2
246,173 - -0.2
246,173 - -0.4
246,173 - +1.4
246,234 - -0.7
246,285 + -1.8
246,285 + -0.8
246,285 + +0.3
246,285 + -0.3
246,286 - +0.1
246,286 - -0.8
246,286 - -0.8
246,302 + -0.2
246,302 + -0.8
246,302 + -0.8
246,302 + -0.2
246,303 - -1.1
246,310 + -1.6
246,311 - -0.8
246,311 - +0.6
246,311 - -0.7
246,311 - +0.2
246,315 + -0.5
246,315 + +1.7
246,315 + -0.3
246,315 + +1.3
246,315 + -0.9
246,316 - +0.7
246,316 - +0.1
246,316 - -0.8
246,316 - +2.1
246,316 - -0.3
246,316 - -0.7
246,316 - +0.4
246,316 - +0.0
246,318 + -1.8
246,319 - +0.6
246,319 - +0.6

Or see this region's nucleotide sequence