Strain Fitness in Variovorax sp. SCN45 around GFF4839

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4837 and GFF4838 overlap by 1 nucleotidesGFF4838 and GFF4839 are separated by 72 nucleotidesGFF4839 and GFF4840 are separated by 582 nucleotidesGFF4840 and GFF4841 overlap by 4 nucleotides GFF4837 - Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20), at 206,342 to 208,783 GFF4837 GFF4838 - Integration host factor alpha subunit, at 208,783 to 209,166 GFF4838 GFF4839 - Transcriptional regulator PA2737, MerR family, at 209,239 to 209,706 GFF4839 GFF4840 - FIG00956188: hypothetical protein, at 210,289 to 210,534 GFF4840 GFF4841 - Conjugative transfer protein TrbI, at 210,531 to 211,802 GFF4841 Position (kb) 209 210Strain fitness (log2 ratio) -2 -1 0 1 2at 209.130 kb on + strandat 209.131 kb on - strandat 209.172 kb on + strandat 209.172 kb on + strandat 209.173 kb on - strandat 209.173 kb on - strandat 209.173 kb on - strandat 209.173 kb on - strandat 209.197 kb on + strandat 209.197 kb on + strandat 209.197 kb on + strandat 209.197 kb on + strandat 209.198 kb on - strandat 209.202 kb on + strandat 209.202 kb on + strandat 209.202 kb on + strandat 209.202 kb on + strandat 209.202 kb on + strandat 209.203 kb on - strandat 209.203 kb on - strandat 209.203 kb on - strandat 209.203 kb on - strandat 209.276 kb on - strandat 209.332 kb on + strand, within GFF4839at 209.389 kb on + strand, within GFF4839at 209.389 kb on + strand, within GFF4839at 209.389 kb on + strand, within GFF4839at 209.392 kb on + strand, within GFF4839at 209.392 kb on + strand, within GFF4839at 209.393 kb on - strand, within GFF4839at 209.393 kb on - strand, within GFF4839at 209.440 kb on + strand, within GFF4839at 209.714 kb on + strandat 209.714 kb on + strandat 209.715 kb on - strandat 209.718 kb on + strandat 209.718 kb on + strandat 209.718 kb on + strandat 209.718 kb on + strandat 209.718 kb on + strandat 209.718 kb on + strandat 209.718 kb on + strandat 209.718 kb on + strandat 209.719 kb on - strandat 209.719 kb on - strandat 209.719 kb on - strandat 209.719 kb on - strandat 209.719 kb on - strandat 209.719 kb on - strandat 209.719 kb on - strandat 209.719 kb on - strandat 209.719 kb on - strandat 209.719 kb on - strandat 209.719 kb on - strandat 209.719 kb on - strandat 209.720 kb on + strandat 209.817 kb on + strandat 209.817 kb on + strandat 209.817 kb on + strandat 209.817 kb on + strandat 209.817 kb on + strandat 209.818 kb on - strandat 209.821 kb on + strandat 209.821 kb on + strandat 209.821 kb on + strandat 209.821 kb on + strandat 209.821 kb on + strandat 209.821 kb on + strandat 209.821 kb on + strandat 209.821 kb on + strandat 209.821 kb on + strandat 209.821 kb on + strandat 209.821 kb on + strandat 209.821 kb on + strandat 209.821 kb on + strandat 209.821 kb on + strandat 209.821 kb on + strandat 209.822 kb on - strandat 209.822 kb on - strandat 209.822 kb on - strandat 209.822 kb on - strandat 209.822 kb on - strandat 209.822 kb on - strandat 209.822 kb on - strandat 209.822 kb on - strandat 209.936 kb on + strandat 209.936 kb on + strandat 209.936 kb on + strandat 209.936 kb on + strandat 209.936 kb on + strandat 209.937 kb on - strandat 209.937 kb on - strandat 209.937 kb on - strandat 209.950 kb on + strandat 209.951 kb on - strandat 209.951 kb on - strandat 209.951 kb on - strandat 209.951 kb on - strandat 210.065 kb on + strandat 210.065 kb on + strandat 210.065 kb on + strandat 210.066 kb on - strandat 210.066 kb on - strandat 210.066 kb on - strandat 210.072 kb on + strandat 210.073 kb on - strandat 210.073 kb on - strandat 210.073 kb on - strandat 210.075 kb on + strandat 210.075 kb on + strandat 210.075 kb on + strandat 210.075 kb on + strandat 210.075 kb on + strandat 210.075 kb on + strandat 210.075 kb on + strandat 210.075 kb on + strandat 210.075 kb on + strandat 210.075 kb on + strandat 210.075 kb on + strandat 210.075 kb on + strandat 210.075 kb on + strandat 210.075 kb on + strandat 210.075 kb on + strandat 210.075 kb on + strandat 210.075 kb on + strandat 210.075 kb on + strandat 210.076 kb on - strandat 210.076 kb on - strandat 210.076 kb on - strandat 210.076 kb on - strandat 210.076 kb on - strandat 210.076 kb on - strandat 210.076 kb on - strandat 210.076 kb on - strandat 210.076 kb on - strandat 210.076 kb on - strandat 210.076 kb on - strandat 210.076 kb on - strandat 210.124 kb on + strandat 210.124 kb on + strandat 210.124 kb on + strandat 210.124 kb on + strandat 210.124 kb on + strandat 210.124 kb on + strandat 210.124 kb on + strandat 210.125 kb on - strandat 210.125 kb on - strandat 210.125 kb on - strandat 210.135 kb on + strandat 210.135 kb on + strandat 210.135 kb on + strandat 210.136 kb on - strandat 210.136 kb on - strandat 210.152 kb on + strandat 210.153 kb on - strandat 210.153 kb on - strandat 210.196 kb on + strandat 210.196 kb on + strandat 210.196 kb on + strandat 210.196 kb on + strandat 210.197 kb on - strandat 210.197 kb on - strandat 210.197 kb on - strandat 210.407 kb on + strand, within GFF4840at 210.408 kb on - strand, within GFF4840at 210.408 kb on - strand, within GFF4840at 210.408 kb on - strand, within GFF4840at 210.432 kb on - strand, within GFF4840at 210.568 kb on + strandat 210.568 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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209,130 + -1.0
209,131 - +0.7
209,172 + -0.7
209,172 + -1.5
209,173 - -1.0
209,173 - +1.7
209,173 - -0.2
209,173 - -2.5
209,197 + -0.8
209,197 + +1.1
209,197 + -0.5
209,197 + -2.3
209,198 - +0.5
209,202 + -0.0
209,202 + +0.1
209,202 + +0.2
209,202 + +0.1
209,202 + +0.8
209,203 - +1.7
209,203 - -0.1
209,203 - -0.2
209,203 - -0.5
209,276 - -0.9
209,332 + GFF4839 0.20 -2.0
209,389 + GFF4839 0.32 -0.9
209,389 + GFF4839 0.32 +0.4
209,389 + GFF4839 0.32 -0.3
209,392 + GFF4839 0.33 -2.0
209,392 + GFF4839 0.33 +0.9
209,393 - GFF4839 0.33 +0.1
209,393 - GFF4839 0.33 -0.9
209,440 + GFF4839 0.43 -0.5
209,714 + +1.4
209,714 + -0.9
209,715 - +0.8
209,718 + -0.6
209,718 + -1.2
209,718 + -0.5
209,718 + +0.1
209,718 + +0.5
209,718 + -0.1
209,718 + +0.1
209,718 + +0.1
209,719 - +1.1
209,719 - +0.7
209,719 - -0.5
209,719 - +0.7
209,719 - +0.1
209,719 - -1.0
209,719 - +0.5
209,719 - -0.4
209,719 - +0.3
209,719 - +0.5
209,719 - +0.4
209,719 - +0.9
209,720 + +0.1
209,817 + -2.2
209,817 + +1.1
209,817 + -0.6
209,817 + +0.0
209,817 + +0.7
209,818 - +0.9
209,821 + +1.7
209,821 + +0.4
209,821 + -0.8
209,821 + -0.5
209,821 + -0.7
209,821 + -0.3
209,821 + -0.2
209,821 + +0.7
209,821 + +0.0
209,821 + +0.1
209,821 + -0.9
209,821 + +1.7
209,821 + -0.3
209,821 + -0.3
209,821 + -0.8
209,822 - -0.8
209,822 - +0.3
209,822 - -0.2
209,822 - -1.2
209,822 - -0.0
209,822 - -0.7
209,822 - +0.7
209,822 - -0.3
209,936 + +1.7
209,936 + -1.8
209,936 + +0.2
209,936 + -0.7
209,936 + +0.7
209,937 - -0.7
209,937 - -0.5
209,937 - +0.4
209,950 + +0.7
209,951 - -0.8
209,951 - -0.5
209,951 - -1.0
209,951 - +0.6
210,065 + -0.7
210,065 + -0.6
210,065 + -0.2
210,066 - +1.0
210,066 - +0.1
210,066 - -0.3
210,072 + +0.1
210,073 - +0.5
210,073 - +0.7
210,073 - -0.1
210,075 + -0.7
210,075 + -1.1
210,075 + +0.2
210,075 + +0.2
210,075 + -0.7
210,075 + +0.9
210,075 + -1.8
210,075 + -1.1
210,075 + +0.5
210,075 + -0.9
210,075 + -0.8
210,075 + -0.7
210,075 + -1.3
210,075 + -0.3
210,075 + -0.0
210,075 + +0.1
210,075 + +0.8
210,075 + -0.1
210,076 - -1.7
210,076 - -0.5
210,076 - +0.9
210,076 - +0.8
210,076 - -0.3
210,076 - +1.9
210,076 - -0.7
210,076 - -0.2
210,076 - -0.7
210,076 - +0.4
210,076 - -1.2
210,076 - -0.0
210,124 + -0.7
210,124 + -0.9
210,124 + +2.0
210,124 + +0.4
210,124 + -1.4
210,124 + -1.2
210,124 + +0.7
210,125 - -0.3
210,125 - -0.3
210,125 - +0.1
210,135 + -0.1
210,135 + +0.1
210,135 + +0.3
210,136 - -0.3
210,136 - +1.7
210,152 + -0.3
210,153 - +0.3
210,153 - -0.3
210,196 + -0.7
210,196 + -0.3
210,196 + +0.7
210,196 + -0.4
210,197 - -0.7
210,197 - -0.6
210,197 - +0.7
210,407 + GFF4840 0.48 +0.1
210,408 - GFF4840 0.48 -0.8
210,408 - GFF4840 0.48 -0.2
210,408 - GFF4840 0.48 -0.9
210,432 - GFF4840 0.58 -0.1
210,568 + -0.7
210,568 + -0.0

Or see this region's nucleotide sequence