Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4822 and GFF4823 overlap by 41 nucleotides GFF4823 and GFF4824 are separated by 121 nucleotides GFF4824 and GFF4825 are separated by 88 nucleotides GFF4825 and GFF4826 are separated by 154 nucleotides
GFF4822 - Thiamine pyrophosphate-requiring enzymes, at 193,588 to 195,318
GFF4822
GFF4823 - hypothetical protein, at 195,278 to 195,577
GFF4823
GFF4824 - Transcriptional regulator, AraC family, at 195,699 to 196,424
GFF4824
GFF4825 - SWIB/MDM2 domain-containing proteins, at 196,513 to 196,968
GFF4825
GFF4826 - Permease of the drug/metabolite transporter (DMT) superfamily, at 197,123 to 198,013
GFF4826
Position (kb) 195
196
197 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 194.815 kb on + strand, within GFF4822 at 195.136 kb on + strand, within GFF4822 at 195.136 kb on + strand, within GFF4822 at 195.137 kb on - strand, within GFF4822 at 195.142 kb on + strand, within GFF4822 at 195.560 kb on + strand at 195.560 kb on + strand at 195.560 kb on + strand at 195.560 kb on + strand at 195.560 kb on + strand at 195.560 kb on + strand at 195.561 kb on - strand at 195.561 kb on - strand at 195.561 kb on - strand at 195.561 kb on - strand at 195.561 kb on - strand at 195.618 kb on + strand at 195.619 kb on - strand at 195.744 kb on + strand at 195.745 kb on - strand at 195.799 kb on + strand, within GFF4824 at 195.799 kb on + strand, within GFF4824 at 195.800 kb on - strand, within GFF4824 at 195.800 kb on - strand, within GFF4824 at 195.800 kb on - strand, within GFF4824 at 196.347 kb on + strand, within GFF4824 at 196.348 kb on - strand, within GFF4824 at 196.348 kb on - strand, within GFF4824 at 196.348 kb on - strand, within GFF4824 at 196.369 kb on + strand at 196.369 kb on + strand at 196.369 kb on + strand at 196.369 kb on + strand at 196.369 kb on + strand at 196.369 kb on + strand at 196.369 kb on + strand at 196.370 kb on - strand at 196.370 kb on - strand at 196.370 kb on - strand at 196.370 kb on - strand at 196.370 kb on - strand at 196.370 kb on - strand at 196.370 kb on - strand at 196.370 kb on - strand at 196.370 kb on - strand at 196.370 kb on - strand at 196.514 kb on + strand at 196.514 kb on + strand at 196.514 kb on + strand at 196.514 kb on + strand at 196.514 kb on + strand at 196.514 kb on + strand at 196.515 kb on - strand at 196.515 kb on - strand at 196.515 kb on - strand at 196.515 kb on - strand at 196.649 kb on + strand, within GFF4825 at 196.649 kb on + strand, within GFF4825 at 196.649 kb on + strand, within GFF4825 at 196.650 kb on - strand, within GFF4825 at 196.650 kb on - strand, within GFF4825 at 196.650 kb on - strand, within GFF4825 at 196.650 kb on - strand, within GFF4825 at 196.650 kb on - strand, within GFF4825 at 196.650 kb on - strand, within GFF4825 at 196.650 kb on - strand, within GFF4825 at 197.038 kb on + strand at 197.039 kb on - strand at 197.039 kb on - strand at 197.039 kb on - strand at 197.285 kb on + strand, within GFF4826 at 197.285 kb on + strand, within GFF4826 at 197.285 kb on + strand, within GFF4826 at 197.286 kb on - strand, within GFF4826 at 197.286 kb on - strand, within GFF4826 at 197.343 kb on + strand, within GFF4826 at 197.344 kb on - strand, within GFF4826
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 194,815 + GFF4822 0.71 +0.4 195,136 + GFF4822 0.89 -2.0 195,136 + GFF4822 0.89 +0.2 195,137 - GFF4822 0.89 -0.0 195,142 + GFF4822 0.90 -0.3 195,560 + -0.7 195,560 + +0.2 195,560 + -0.9 195,560 + -0.9 195,560 + -0.9 195,560 + -0.0 195,561 - -0.8 195,561 - -1.3 195,561 - +1.1 195,561 - +1.0 195,561 - +3.0 195,618 + -1.1 195,619 - +0.5 195,744 + -0.9 195,745 - +0.8 195,799 + GFF4824 0.14 -0.7 195,799 + GFF4824 0.14 +0.1 195,800 - GFF4824 0.14 -1.6 195,800 - GFF4824 0.14 -0.3 195,800 - GFF4824 0.14 -0.3 196,347 + GFF4824 0.89 +0.2 196,348 - GFF4824 0.89 +0.7 196,348 - GFF4824 0.89 -1.5 196,348 - GFF4824 0.89 -1.4 196,369 + +0.1 196,369 + +0.7 196,369 + +0.4 196,369 + -0.1 196,369 + +1.0 196,369 + +0.4 196,369 + -0.2 196,370 - -0.2 196,370 - -0.2 196,370 - -0.3 196,370 - +0.3 196,370 - +0.1 196,370 - -0.8 196,370 - -0.9 196,370 - +0.1 196,370 - -0.1 196,370 - -1.2 196,514 + +0.1 196,514 + -0.3 196,514 + +0.1 196,514 + -0.3 196,514 + +0.5 196,514 + -0.7 196,515 - -0.3 196,515 - -0.4 196,515 - -0.5 196,515 - -0.2 196,649 + GFF4825 0.30 -1.0 196,649 + GFF4825 0.30 -0.7 196,649 + GFF4825 0.30 -0.3 196,650 - GFF4825 0.30 +1.3 196,650 - GFF4825 0.30 -0.3 196,650 - GFF4825 0.30 -0.2 196,650 - GFF4825 0.30 -0.4 196,650 - GFF4825 0.30 -0.3 196,650 - GFF4825 0.30 +1.5 196,650 - GFF4825 0.30 -0.8 197,038 + -0.1 197,039 - +0.3 197,039 - -1.3 197,039 - -0.2 197,285 + GFF4826 0.18 -0.5 197,285 + GFF4826 0.18 -0.7 197,285 + GFF4826 0.18 +0.3 197,286 - GFF4826 0.18 -0.3 197,286 - GFF4826 0.18 -0.6 197,343 + GFF4826 0.25 -1.3 197,344 - GFF4826 0.25 +3.9
Or see this region's nucleotide sequence